genome.fa.s7.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  166  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52346646--52346820	46	3.8	45	77	7	181	29	29	20	21	1.98
52346654--52346825	93	1.8	93	91	0	281	28	29	20	20	1.98
52363193--52363250	30	1.9	30	82	6	73	17	29	31	22	1.96
52373064--52373143	41	2.0	41	92	0	133	30	10	17	42	1.82
52374858--52374935	30	2.6	30	95	0	138	14	23	38	24	1.91
52376789--52376857	24	2.9	24	78	4	77	37	30	13	18	1.89
52376885--52376934	24	2.1	24	88	0	73	34	30	12	24	1.91
52376890--52377073	94	2.0	90	87	4	260	39	19	10	30	1.85
52384427--52384478	27	1.9	27	96	0	95	13	25	32	28	1.93
52384350--52384614	103	2.6	103	90	1	415	19	20	29	29	1.97
52404105--52404192	6	14.3	6	75	17	83	47	17	17	18	1.83
52404114--52404192	31	2.5	31	91	0	122	48	16	17	17	1.82
52404119--52404165	25	1.9	24	95	4	85	44	19	19	17	1.87
52404612--52404789	27	6.6	27	85	0	212	23	19	19	37	1.94
52404610--52404789	81	2.2	81	86	0	270	24	18	19	37	1.94
52404773--52404843	27	2.6	26	76	12	72	29	7	26	36	1.83
52404821--52405166	27	12.8	28	78	9	263	31	8	20	38	1.84
52404839--52404897	26	2.2	27	84	3	75	28	6	20	44	1.77
52404880--52405166	81	3.5	81	84	1	378	32	8	19	39	1.83
52404881--52405166	54	5.3	54	90	0	401	32	8	19	39	1.83
52407908--52408095	49	3.8	49	85	2	259	27	26	19	27	1.99
52407913--52408100	100	1.9	100	95	0	340	27	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52413143--52413325	49	3.7	49	81	4	215	29	24	17	28	1.97
52416350--52416397	22	2.1	23	85	11	64	29	2	0	68	1.01
52416768--52417035	107	2.6	104	80	7	328	26	2	13	57	1.48
52417014--52417538	261	2.0	263	95	0	955	45	9	16	27	1.79
52421457--52421538	37	2.2	36	87	6	112	25	29	14	30	1.95
52421555--52421585	11	2.8	11	100	0	62	22	29	19	29	1.98
52423903--52424165	40	6.6	40	88	3	316	24	20	27	26	1.99
52440060--52440232	46	3.7	46	75	13	174	22	19	27	31	1.98
52440057--52440226	93	1.8	93	89	0	268	22	18	28	30	1.97
52440457--52440494	19	2.0	20	85	15	53	36	0	23	39	1.55
52447597--52447766	46	3.7	46	78	10	184	22	18	28	30	1.97
52447591--52447761	93	1.8	93	92	0	288	21	19	28	30	1.97
52447991--52448028	19	2.0	20	85	15	53	36	0	23	39	1.55
52452543--52452576	12	2.8	12	86	4	50	41	0	11	47	1.40
52470384--52470417	17	2.0	17	100	0	68	35	11	11	41	1.78
52471748--52471786	18	2.3	16	82	8	51	53	0	5	41	1.23
52472653--52472789	43	3.2	43	77	9	145	26	15	26	32	1.95
52477065--52477238	28	6.1	28	74	7	147	29	29	14	25	1.95
52478709--52478741	7	4.7	7	100	0	66	42	45	12	0	1.41
52481781--52481839	29	2.1	28	87	3	82	32	22	16	28	1.96
52488178--52488268	46	2.0	46	86	0	128	27	31	6	34	1.83
52488285--52488360	22	3.3	22	66	28	59	25	27	11	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52488248--52488432	47	3.9	47	82	1	192	25	30	9	34	1.88
52492509--52492677	52	3.3	50	84	8	209	27	15	29	27	1.96
52492509--52492686	51	3.5	49	80	11	173	27	16	28	26	1.97
52493147--52493198	27	1.9	27	96	0	95	67	9	5	17	1.38
52495129--52495661	262	2.0	266	90	1	831	33	25	18	22	1.96
52524309--52524474	46	3.7	45	71	19	141	22	18	28	31	1.97
52524691--52524728	19	2.0	20	85	15	53	36	0	23	39	1.55
52528954--52529059	29	3.7	29	87	0	158	38	11	29	20	1.88
52531124--52531363	24	10.0	24	90	1	356	28	20	22	27	1.99
52531414--52531473	20	3.0	20	95	0	111	33	20	11	35	1.88
52531414--52531468	11	5.4	11	70	16	55	30	20	12	36	1.90
52531516--52531563	25	1.9	25	86	0	69	25	16	25	33	1.96
52533889--52533932	19	2.4	19	85	7	56	50	0	9	40	1.34
52534847--52534874	5	5.6	5	100	0	56	0	21	0	78	0.75
52535664--52535702	8	4.9	8	90	0	51	46	28	20	5	1.72
52535951--52536013	26	2.3	27	75	8	65	34	23	11	30	1.90
52539653--52539679	12	2.2	12	100	0	54	51	7	0	40	1.30
52540125--52540219	28	3.4	28	89	2	129	27	12	27	32	1.93
52540153--52540235	27	3.0	27	85	5	78	31	12	24	32	1.91
52547923--52547949	12	2.2	12	100	0	54	51	7	0	40	1.30
52548396--52548493	27	3.5	28	90	2	135	26	13	28	31	1.94
52548424--52548506	27	3.0	27	87	5	96	30	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52559837--52559891	27	2.0	27	100	0	110	52	25	3	18	1.61
52563952--52564219	40	6.7	40	96	0	473	22	27	20	30	1.98
52580414--52580452	19	2.1	19	90	0	60	46	12	7	33	1.71
52583323--52583391	31	2.2	31	84	5	86	26	14	15	43	1.85
52583443--52583510	31	2.2	31	94	0	118	44	16	13	26	1.84
52584233--52584742	2	262.0	2	74	6	294	0	60	0	38	1.04
52585931--52585983	26	2.0	26	96	0	97	37	1	26	33	1.68
52589034--52589253	49	4.6	49	76	9	170	24	27	20	28	1.99
52589225--52589345	45	2.7	45	82	9	133	23	27	19	29	1.98
52606099--52606320	40	5.6	40	87	1	304	27	26	22	23	2.00
52609148--52609186	20	2.0	20	84	0	51	12	38	25	23	1.90
52619500--52619569	27	2.6	27	95	2	113	31	28	12	27	1.93
52619500--52619597	28	3.5	28	90	2	135	31	28	13	26	1.94
52630133--52630211	37	2.1	37	88	0	113	25	30	18	25	1.98
52630330--52630552	47	4.7	47	91	1	331	27	30	8	32	1.88
52633447--52633788	40	8.6	40	82	6	324	25	27	22	24	2.00
52635643--52635721	37	2.1	37	90	0	122	25	31	18	24	1.98
52635840--52636062	47	4.7	47	91	1	331	27	30	8	32	1.88
52640039--52640153	29	4.0	29	81	10	121	31	26	13	27	1.94
52640363--52640405	8	5.4	8	85	0	50	9	23	18	48	1.76
52644601--52644685	28	3.0	28	84	6	118	28	29	14	28	1.95
52646489--52646719	80	2.9	80	98	0	435	50	3	16	29	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52651205--52651378	46	3.8	46	75	13	167	22	17	28	31	1.97
52659157--52659340	67	2.8	66	79	7	221	51	9	13	25	1.70
52661093--52661457	48	7.6	48	87	1	437	26	28	18	26	1.98
52665930--52665996	29	2.3	29	82	5	82	28	28	13	29	1.94
52665818--52666145	174	1.9	174	95	0	593	31	24	14	30	1.94
52666105--52666176	29	2.5	29	81	0	90	30	30	12	26	1.93
52673987--52674054	29	2.3	29	82	5	84	27	29	13	29	1.94
52673876--52674203	174	1.9	174	96	0	602	31	24	14	29	1.94
52674163--52674234	29	2.5	29	81	0	90	30	30	12	26	1.93
52676745--52676922	27	6.6	27	81	5	171	29	28	15	26	1.96
52676766--52676921	82	1.9	81	85	3	215	28	28	16	26	1.97
52684287--52684464	27	6.6	27	80	5	162	29	27	15	27	1.96
52696777--52696847	35	2.0	35	100	0	142	29	19	11	39	1.87
52704093--52704192	49	2.0	49	98	0	191	29	24	4	43	1.72
52708440--52708489	15	2.7	19	71	28	54	16	34	0	50	1.45
52708450--52708480	15	2.1	15	100	0	62	19	32	0	48	1.49
52720080--52720170	29	3.2	29	86	6	116	29	32	13	24	1.93
52720387--52720421	16	2.2	16	94	0	61	11	20	17	51	1.75
52722552--52722584	18	1.9	17	88	11	50	27	15	12	45	1.81
52723189--52723214	11	2.4	11	100	0	52	53	19	0	26	1.45
52725932--52725966	16	2.2	16	89	0	52	14	20	14	51	1.76
52732312--52732366	29	1.9	29	88	3	85	32	30	9	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52733708--52733734	11	2.5	11	100	0	54	51	7	0	40	1.30
52736470--52736641	46	3.7	45	78	10	186	22	19	29	29	1.98
52739577--52739654	15	5.2	15	83	6	88	11	15	15	57	1.65
52742053--52742230	46	3.8	46	76	4	187	22	19	28	29	1.98
52742052--52742222	93	1.8	93	88	0	261	22	19	28	29	1.98
52744427--52744511	43	2.0	43	92	0	143	27	10	21	41	1.85
52745258--52745308	22	2.3	23	83	10	61	33	17	21	27	1.96
52745258--52745358	24	4.3	24	76	16	88	27	21	18	31	1.97
52749259--52749461	45	4.7	44	86	8	249	23	22	27	26	1.99
52749259--52749461	85	2.3	87	85	7	254	23	22	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295