genome.fa.s7.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  212  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67565202--67565384	56	3.3	55	83	6	217	25	13	28	32	1.94
67565227--67565407	28	6.5	28	93	1	267	25	13	28	32	1.94
67573416--67573595	28	6.6	27	92	1	252	27	13	27	30	1.94
67573511--67573589	27	3.0	24	87	8	70	29	12	27	30	1.93
67577111--67577326	46	4.7	45	76	12	181	24	30	18	26	1.98
67583573--67583804	49	4.7	49	81	3	266	29	27	17	25	1.97
67583573--67583803	100	2.3	98	84	2	282	29	27	17	25	1.97
67596790--67596831	20	2.1	20	95	0	75	47	9	9	33	1.68
67600010--67600127	6	19.0	6	73	13	96	48	15	16	19	1.81
67599983--67600054	25	2.5	30	72	27	84	47	13	19	19	1.83
67599992--67600073	25	3.3	25	89	5	114	45	13	20	20	1.85
67600014--67600116	43	2.4	43	88	1	152	46	15	17	20	1.84
67600039--67600127	31	2.9	31	88	3	126	49	15	14	20	1.79
67600264--67600365	27	3.8	26	88	5	132	36	21	23	18	1.95
67600524--67600588	22	3.0	22	82	8	87	33	21	24	20	1.97
67601033--67601363	27	12.3	27	89	2	373	25	20	20	33	1.97
67601380--67601537	81	2.0	81	85	0	217	38	6	22	31	1.81
67601375--67601518	27	5.3	27	79	3	146	40	6	23	29	1.79
67601375--67601496	54	2.3	54	88	2	183	41	4	22	30	1.75
67601509--67601606	27	3.6	27	77	10	83	33	8	16	41	1.78
67601573--67601723	81	1.9	81	87	2	223	29	8	19	42	1.81
67601572--67601723	27	5.6	27	84	3	189	28	8	20	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67603256--67603373	6	19.0	6	71	13	87	48	15	16	20	1.81
67603238--67603298	25	2.4	25	94	0	104	49	11	19	19	1.78
67603260--67603362	43	2.4	43	86	1	143	47	15	16	20	1.82
67603285--67603373	31	2.9	31	86	3	126	48	15	14	21	1.81
67603510--67603611	27	3.8	26	84	5	114	36	22	22	18	1.95
67603528--67603629	54	1.9	54	84	4	127	37	22	21	18	1.94
67603770--67603829	22	2.8	21	82	5	57	35	23	21	20	1.96
67604260--67604695	27	16.3	27	86	2	531	24	19	21	35	1.96
67604707--67604875	54	3.1	54	85	1	223	42	7	20	28	1.80
67604732--67604891	81	2.0	81	92	0	266	42	8	20	29	1.80
67604700--67604897	27	7.3	27	82	2	200	41	8	21	29	1.81
67604743--67604921	81	2.2	81	87	0	214	40	10	18	30	1.84
67604949--67605155	27	7.7	27	82	4	204	31	7	19	42	1.78
67606246--67606348	27	3.8	27	70	5	91	35	25	8	30	1.86
67606333--67606801	27	17.2	27	81	5	498	37	16	19	26	1.93
67606333--67606398	33	2.0	34	93	3	116	37	16	16	28	1.91
67607130--67607188	22	2.7	22	81	0	64	20	23	22	33	1.97
67609893--67610095	47	4.5	47	76	13	228	30	15	23	31	1.95
67609988--67610133	38	3.6	38	76	18	150	29	15	26	28	1.96
67609932--67610138	85	2.4	85	95	0	360	30	14	24	30	1.95
67610069--67610145	38	2.0	38	94	0	136	31	15	24	28	1.96
67614542--67614589	25	1.9	25	86	0	69	31	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67614720--67614796	25	3.1	24	79	5	73	32	20	19	27	1.97
67615009--67615092	31	2.7	31	85	1	116	30	15	27	26	1.96
67618190--67618367	40	4.5	40	87	4	218	24	28	24	22	1.99
67622713--67622808	43	2.3	43	90	1	149	48	11	21	17	1.78
67630566--67630672	46	2.3	46	96	0	196	53	12	21	13	1.71
67632092--67632135	22	2.0	22	83	16	56	40	0	0	59	0.98
67635468--67635521	26	2.0	26	85	3	72	66	0	3	29	1.09
67635493--67635542	20	2.5	20	81	12	66	62	0	2	36	1.07
67642103--67642277	46	3.8	45	79	10	201	29	29	20	21	1.98
67642110--67642281	93	1.8	93	93	2	301	28	29	20	21	1.98
67642152--67642297	46	3.2	45	76	16	147	29	26	19	23	1.99
67644350--67644429	29	2.8	28	85	7	108	27	33	15	23	1.94
67644350--67644429	28	2.8	28	85	7	108	27	33	15	23	1.94
67650451--67650496	22	2.0	21	84	16	56	56	0	6	36	1.25
67657368--67657543	46	3.8	46	78	1	190	21	19	29	29	1.98
67657365--67657535	93	1.8	93	89	0	270	21	20	29	28	1.98
67660478--67660531	15	3.6	15	76	0	63	11	18	12	57	1.64
67660474--67660542	30	2.3	30	85	2	95	8	17	17	56	1.65
67662926--67663101	46	3.8	46	77	7	194	21	21	28	28	1.98
67662923--67663093	93	1.8	93	92	0	288	21	21	29	27	1.99
67673470--67673500	12	2.6	12	94	0	53	58	12	12	16	1.64
67673661--67673756	27	3.6	27	81	2	104	35	20	23	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67673958--67674361	27	15.0	27	84	1	470	25	20	18	36	1.94
67676298--67676378	42	1.9	43	84	2	110	25	8	20	44	1.80
67680660--67681054	47	8.4	47	91	1	558	32	10	30	25	1.89
67681173--67681252	37	2.2	37	86	4	108	23	17	31	27	1.97
67683620--67683813	47	4.1	47	95	0	334	29	12	12	44	1.80
67684629--67684789	45	3.6	45	85	5	213	24	22	27	24	2.00
67685330--67685362	16	1.9	18	88	11	52	24	15	12	48	1.78
67692965--67692989	3	8.3	3	100	0	50	36	0	0	64	0.94
67694796--67695027	40	5.8	40	82	4	297	25	27	21	25	1.99
67694776--67695026	80	3.2	80	94	0	414	26	27	21	24	1.99
67698362--67698479	25	4.7	25	93	0	200	26	24	22	27	2.00
67698362--67698504	75	1.9	75	84	5	191	27	23	22	26	2.00
67709799--67710020	40	5.6	40	91	1	349	28	25	21	23	1.99
67714427--67714777	48	7.1	48	88	7	522	34	6	28	30	1.83
67714551--67714764	107	2.0	107	96	0	392	33	6	28	30	1.83
67714918--67715020	37	2.8	37	95	0	179	23	20	31	25	1.98
67716299--67716587	40	7.2	40	95	0	497	22	19	29	28	1.98
67716619--67716743	28	4.4	28	77	4	135	23	19	25	32	1.98
67719872--67720270	48	8.1	48	88	6	591	34	6	28	30	1.83
67719948--67720257	155	2.0	155	94	0	548	32	7	29	30	1.84
67720411--67720513	37	2.8	37	95	0	179	23	20	31	25	1.98
67723810--67723975	40	4.2	40	89	0	244	28	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67744052--67744125	37	2.0	37	100	0	148	40	18	8	32	1.80
67759077--67759119	21	2.0	21	100	0	86	23	13	27	34	1.93
67760744--67760816	36	2.0	36	97	0	137	23	13	20	42	1.88
67765552--67765653	29	3.6	29	86	1	134	25	16	30	27	1.97
67765552--67765666	57	2.0	56	84	3	149	26	15	29	28	1.96
67767422--67767684	40	6.6	39	85	4	278	25	26	21	25	2.00
67767422--67767684	120	2.2	119	82	6	309	25	26	21	25	2.00
67767616--67767693	40	1.9	41	82	10	97	26	28	20	24	1.99
67775367--67775662	80	3.7	79	85	3	362	26	27	19	26	1.99
67775367--67775616	40	6.3	40	91	1	342	26	27	20	25	1.99
67775365--67775662	120	2.5	119	83	3	357	26	27	19	26	1.99
67775601--67775677	40	1.9	41	82	12	97	27	27	20	24	1.99
67780535--67780638	27	3.7	26	75	16	75	26	27	17	27	1.98
67780538--67780674	59	2.3	61	81	8	158	27	26	18	28	1.98
67784516--67784735	45	4.9	45	89	2	307	39	15	19	25	1.91
67784516--67784735	89	2.4	90	90	2	352	39	15	19	25	1.91
67785366--67785498	66	2.0	68	92	7	227	46	15	21	15	1.83
67788436--67788650	44	4.8	45	88	4	301	40	15	19	25	1.90
67788436--67788650	90	2.4	88	89	4	333	40	15	19	25	1.90
67789223--67789323	52	1.9	52	93	0	175	43	20	16	18	1.88
67790462--67790515	27	2.0	27	96	0	99	57	3	12	25	1.52
67791983--67792023	19	2.2	19	100	0	82	41	4	17	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67792676--67792962	147	2.0	146	88	3	425	42	4	11	41	1.62
67792931--67792991	19	3.2	19	76	17	63	42	1	14	40	1.56
67806600--67806649	25	2.0	25	100	0	100	20	24	16	40	1.91
67807968--67808143	46	3.8	45	73	10	158	20	18	29	31	1.96
67814021--67814281	27	9.7	27	79	5	215	37	19	10	32	1.86
67814021--67814250	81	2.8	81	80	5	252	38	20	9	32	1.84
67814647--67814725	22	3.6	22	72	6	79	21	18	22	36	1.95
67814643--67814752	44	2.5	44	92	0	193	21	16	22	39	1.92
67814669--67814747	22	3.6	22	73	0	86	17	16	25	40	1.90
67820677--67820782	40	2.7	40	86	1	151	22	27	25	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295