Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  12  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3775638--3775689
18
3.2
16
75
21
54
65
0
0
34
0.93
3785115--3785260
10
14.7
10
66
19
56
37
0
3
58
1.15
3785213--3785270
30
1.9
30
86
13
84
31
0
5
63
1.16
3785174--3785350
93
1.9
95
81
6
218
35
1
4
59
1.25
3785174--3785354
94
1.9
94
81
6
215
35
1
4
59
1.25
3785315--3785427
9
12.1
9
68
18
54
33
2
1
61
1.20
3785342--3785425
27
3.1
27
73
14
66
33
2
2
61
1.21
3791402--3791450
26
1.9
25
91
4
80
38
2
4
55
1.31
3791396--3791464
26
2.8
25
79
14
79
42
1
4
52
1.30
3794585--3794630
12
3.6
12
78
16
56
34
0
0
65
0.93
3796920--3796963
19
2.3
20
84
7
56
27
20
11
40
1.86
3801620--3802070
44
10.5
43
72
12
252
30
21
21
26
1.98
3801790--3802082
87
3.4
83
86
7
356
30
21
22
25
1.99
3803807--3803852
12
3.6
12
78
16
56
34
0
0
65
0.93
3805980--3806197
107
2.0
107
99
0
427
34
14
14
36
1.87
3815704--3815737
10
3.4
10
95
0
59
26
0
14
58
1.36
3815747--3815804
27
2.1
27
81
12
66
53
0
3
43
1.17
3815747--3815804
13
4.3
14
74
18
52
53
0
3
43
1.17
3821983--3822136
74
2.1
74
80
4
168
30
31
9
29
1.88
3831231--3831300
22
3.2
22
83
2
79
65
11
15
7
1.45
3831265--3831315
21
2.4
22
80
3
59
66
7
13
11
1.43
3841283--3841324
21
2.0
21
85
0
57
40
11
7
40
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3841885--3841928
13
3.5
13
90
3
72
47
0
6
45
1.29
3854806--3854851
19
2.4
19
85
0
65
65
2
4
28
1.23
3856383--3856646
132
2.0
132
100
0
528
24
7
25
42
1.81
3862560--3862602
21
2.1
20
86
4
59
34
2
0
62
1.08
3863163--3863203
19
2.2
19
86
8
57
24
4
4
65
1.32
3863157--3863214
22
2.7
22
74
17
59
24
3
5
67
1.27
3863676--3863718
19
2.4
18
81
11
52
41
0
32
25
1.56
3867209--3867412
52
4.0
52
81
8
233
29
30
16
23
1.96
3872942--3872980
15
2.7
15
92
4
62
33
12
2
51
1.54
3883394--3883468
24
3.2
24
64
7
64
48
5
8
38
1.56
3883376--3883468
46
2.0
46
97
0
177
46
5
8
39
1.57
3889407--3889461
28
2.0
28
82
7
67
52
7
7
32
1.56
3892781--3892823
21
2.0
21
95
0
77
34
9
23
32
1.87
3894273--3894311
16
2.3
17
91
8
62
38
0
0
61
0.96
3894420--3894467
23
2.1
23
92
0
78
33
14
6
45
1.70
3898601--3898644
23
1.9
23
81
9
54
52
2
11
34
1.50
3901815--3901861
24
2.0
23
84
12
60
34
0
4
61
1.15
3901980--3902031
22
2.4
21
83
6
68
61
5
0
32
1.20
3909517--3909574
22
2.6
23
81
13
75
56
0
0
43
0.99
3909509--3909579
22
3.2
22
73
16
67
50
0
0
49
1.00
3914746--3914838
18
5.2
18
85
0
132
33
16
22
27
1.95
3914746--3914838
36
2.6
36
89
0
150
33
16
22
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3915894--3915953
21
2.9
21
75
20
63
61
8
1
28
1.34
3916987--3917193
109
1.9
109
91
2
344
33
18
17
29
1.95
3917810--3917871
18
3.6
18
77
16
69
58
0
6
35
1.24
3917807--3917871
35
1.9
33
84
12
87
56
0
7
35
1.28
3919700--3920356
88
7.5
87
89
2
800
24
23
24
28
2.00
3919765--3919902
44
3.2
44
66
17
133
23
20
26
29
1.99
3919721--3919858
44
3.2
43
67
20
115
24
23
25
26
2.00
3925149--3925197
19
2.5
20
80
6
57
42
12
18
26
1.85
3926574--3926776
110
1.8
110
93
2
354
33
19
17
30
1.95
3927404--3927465
18
3.6
18
77
16
69
58
0
6
35
1.24
3927401--3927465
35
1.9
33
84
12
87
56
0
7
35
1.28
3929293--3929951
88
7.5
87
89
2
793
23
23
23
28
2.00
3929358--3929496
44
3.2
44
66
15
133
23
20
26
30
1.98
3934744--3934792
19
2.5
20
80
6
57
42
12
18
26
1.85
3936168--3936370
110
1.8
110
93
2
354
33
19
17
30
1.95
3936997--3937058
18
3.6
18
77
16
69
58
0
6
35
1.24
3936994--3937058
35
1.9
33
84
12
87
56
0
7
35
1.28
3939029--3939396
183
2.0
183
100
0
736
32
14
15
37
1.87
3940024--3940056
15
2.3
15
89
5
50
42
0
3
54
1.15
3949854--3949904
25
2.0
25
100
0
102
49
0
19
31
1.49
3951301--3951432
40
3.3
40
81
0
156
37
19
12
30
1.90
3952669--3952763
40
2.4
39
74
5
102
35
36
11
15
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3954691--3954746
29
1.9
29
85
7
78
26
25
5
42
1.76
3954826--3954862
20
1.9
18
89
10
56
35
21
0
43
1.53
3957534--3957990
46
10.0
46
92
1
713
22
23
14
40
1.90
3957539--3957980
229
1.9
229
92
1
735
21
23
14
40
1.90
3960127--3960175
3
17.3
3
76
19
52
69
0
2
28
1.00
3960133--3960171
11
3.5
11
92
0
69
69
0
2
28
1.02
3960134--3960175
19
2.2
19
87
8
59
71
0
2
26
0.98
3960145--3960220
20
3.7
21
77
10
68
59
6
1
32
1.32
3965235--3965272
18
2.1
18
100
0
76
31
0
0
68
0.90
3965502--3965551
7
7.1
7
78
15
50
26
0
4
70
1.05
3965517--3965570
16
3.4
16
73
14
58
27
0
3
68
1.06
3967124--3967153
11
2.7
11
100
0
60
73
10
6
10
1.25
3967528--3967570
17
2.5
17
92
0
68
62
30
0
6
1.21
3967855--3967893
17
2.3
17
86
8
53
17
10
0
71
1.12
3967935--3967986
13
3.9
13
80
5
59
75
1
0
23
0.91
3968071--3968104
11
3.1
11
88
12
52
0
52
0
47
1.00
3968629--3968673
11
4.1
11
82
0
54
35
0
4
60
1.17
3976468--3976504
20
1.9
18
89
10
56
43
0
21
35
1.53
3984544--3984570
12
2.2
12
100
0
54
0
62
0
37
0.95
3984831--3984862
12
2.7
12
95
0
55
56
6
18
18
1.62
3988594--3988646
21
2.5
21
90
0
79
32
37
7
22
1.82
4000139--4000224
31
2.9
28
81
10
91
50
4
4
40
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4000136--4000224
30
3.0
29
83
5
106
50
4
4
40
1.43
4002110--4002143
17
2.0
17
88
11
52
41
2
0
55
1.15
4023139--4023359
42
5.4
42
80
6
211
48
7
16
27
1.73
4023139--4023361
83
2.7
84
81
7
235
47
7
17
27
1.73
4025429--4025491
20
3.0
20
77
9
72
39
26
19
14
1.90
4026882--4026921
21
2.0
20
90
5
62
7
25
7
60
1.50
4026928--4026959
5
6.2
5
96
3
55
56
0
0
43
0.99
4026928--4027009
16
4.9
16
75
16
62
53
2
1
42
1.21
4026981--4027009
8
3.6
8
100
0
58
62
0
0
37
0.96
4030996--4031036
21
2.0
21
90
0
64
14
56
4
24
1.58
4036817--4036843
5
5.4
5
100
0
54
81
0
18
0
0.69
4038218--4038252
13
2.6
13
90
4
52
34
0
11
54
1.37
4039963--4040002
19
2.1
19
86
9
55
60
7
0
32
1.25
4048854--4048895
14
2.9
15
79
6
52
61
0
0
38
0.96
4059409--4059433
5
5.0
5
100
0
50
40
0
0
60
0.97
4065421--4065476
10
5.7
10
72
4
51
32
3
1
62
1.23
4065419--4065476
30
1.9
30
89
6
91
31
3
1
63
1.21
4071740--4071784
18
2.5
18
85
7
56
48
0
11
40
1.39
4074006--4074042
17
2.1
18
90
5
58
21
10
10
56
1.64
4074388--4074467
26
3.0
26
83
5
97
28
10
1
60
1.37
4074388--4074489
26
3.6
29
76
11
95
27
8
0
62
1.31
4077134--4077216
42
2.0
43
85
2
114
24
25
14
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4077193--4077306
47
2.4
47
82
7
126
31
25
14
28
1.94
4077328--4077538
31
6.8
31
89
2
289
28
26
17
27
1.98
4077514--4077642
50
2.5
51
88
2
197
26
23
15
34
1.94
4087856--4087958
53
1.9
53
94
0
179
29
32
9
29
1.89
4091583--4091651
34
2.0
34
97
0
129
37
11
21
28
1.89
4095527--4095645
47
2.6
47
86
1
150
29
26
15
28
1.96
4095668--4095846
31
5.8
31
93
3
290
24
28
20
26
1.99
4095822--4096003
55
3.5
50
84
9
240
27
23
14
34
1.94
4102520--4102557
18
2.1
18
90
0
58
36
0
5
57
1.21
4102520--4102559
19
2.2
18
86
4
53
37
0
5
57
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295