genome.fa.s7.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  107  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31978559--31978613	26	2.2	25	83	9	67	27	14	20	38	1.91
31978569--31978620	26	2.0	26	100	0	104	26	19	15	38	1.91
31985496--31985596	29	3.5	29	81	5	123	32	28	12	25	1.93
31985654--31985687	18	1.9	18	88	5	52	26	41	17	14	1.88
31985815--31985865	24	2.1	24	81	0	57	15	15	15	52	1.74
31990165--31990202	19	2.0	19	85	10	51	18	10	0	71	1.14
31992608--31992677	31	2.3	31	87	2	97	30	24	15	30	1.96
31992889--31992941	25	2.2	25	89	3	81	26	16	20	35	1.94
31992987--31993037	21	2.4	21	83	0	66	33	19	11	35	1.88
31994085--31994126	22	1.9	22	95	0	75	54	0	33	11	1.37
32004911--32005034	29	4.3	29	82	4	146	30	29	13	26	1.94
32007297--32007329	18	1.9	17	88	11	50	30	15	12	42	1.83
32008670--32008758	27	3.3	27	85	3	99	30	14	16	38	1.89
32008711--32008869	27	5.9	27	82	2	194	32	10	17	40	1.83
32008683--32008868	54	3.4	54	85	2	241	31	10	18	39	1.84
32008683--32008869	27	7.0	26	78	11	180	31	10	18	39	1.85
32019809--32019897	27	3.3	27	84	4	99	30	14	15	39	1.88
32019822--32020001	54	3.4	53	78	9	197	30	10	18	41	1.83
32019822--32020005	27	7.0	26	76	9	149	31	10	17	40	1.84
32019852--32019999	53	2.8	53	83	8	194	31	9	16	42	1.80
32029350--32029417	29	2.3	29	85	5	93	27	30	13	27	1.94
32029239--32029565	173	1.9	174	94	0	584	30	24	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32029524--32029596	29	2.5	30	84	13	107	28	28	15	27	1.96
32037477--32037544	29	2.3	29	85	5	93	27	30	13	27	1.94
32037366--32037693	174	1.9	174	95	0	593	31	24	14	29	1.94
32037646--32037724	29	2.7	30	82	13	110	30	30	13	25	1.94
32044175--32044229	21	2.8	19	81	10	65	70	5	1	21	1.16
32044604--32044646	21	2.0	21	95	0	77	37	11	23	27	1.89
32046845--32046875	14	2.3	14	94	5	55	64	0	6	29	1.18
32054837--32054869	16	2.1	16	94	0	57	42	18	18	21	1.89
32059280--32059367	27	3.3	27	85	3	115	39	17	11	31	1.85
32059280--32059384	54	1.9	54	81	7	124	38	20	11	30	1.87
32059373--32059503	27	4.9	27	90	0	172	27	22	9	40	1.85
32059518--32059786	27	9.9	27	75	7	179	39	18	10	31	1.85
32059481--32059728	81	3.0	81	81	7	254	40	19	10	30	1.84
32059804--32059877	27	2.7	27	76	12	71	37	21	20	20	1.94
32061125--32061191	20	3.3	20	91	0	107	32	11	20	34	1.90
32061242--32061385	47	3.1	46	88	2	198	29	22	20	27	1.99
32061241--32061380	71	2.0	71	94	0	244	28	23	21	26	1.99
32061241--32061392	24	6.4	24	88	3	218	29	22	21	26	1.99
32061600--32061663	31	2.1	31	90	0	101	37	14	23	25	1.92
32064378--32064430	27	1.9	27	84	3	70	41	13	11	33	1.80
32064387--32064485	27	3.7	27	83	5	103	40	18	11	30	1.85
32064482--32064540	27	2.2	27	87	0	82	27	30	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32064498--32064602	55	1.9	55	90	0	165	24	20	11	42	1.85
32064490--32064613	27	4.6	27	87	2	167	28	20	9	41	1.83
32064591--32064876	27	10.5	28	72	12	177	38	18	10	32	1.85
32064605--32064782	81	2.2	81	87	5	245	41	18	10	29	1.84
32064640--32064838	81	2.4	81	81	12	246	41	19	9	30	1.83
32064927--32064987	27	2.3	27	80	5	70	37	19	24	18	1.94
32066150--32066197	25	1.9	25	91	0	78	35	25	14	25	1.94
32066234--32066300	20	3.3	20	91	0	107	32	11	20	34	1.90
32066350--32066501	24	6.4	23	87	4	196	30	21	21	26	1.99
32066350--32066501	47	3.2	47	84	3	198	30	21	21	26	1.99
32066362--32066496	71	1.9	71	93	0	234	29	22	20	27	1.98
32066709--32066772	31	2.1	31	90	0	101	37	14	23	25	1.92
32074936--32074966	14	2.3	14	94	5	55	64	0	6	29	1.18
32077590--32077618	6	4.8	6	100	0	58	51	0	13	34	1.42
32079153--32079191	19	2.1	19	85	0	51	71	7	5	15	1.26
32079655--32079724	27	2.5	28	90	4	106	34	22	25	17	1.96
32079655--32079744	28	3.2	26	84	7	99	33	23	24	18	1.97
32090916--32090997	29	2.8	29	98	0	155	23	24	15	36	1.94
32095088--32095119	17	1.9	16	93	6	55	18	3	3	75	1.08
32095698--32095766	29	2.4	29	82	2	86	34	4	13	47	1.62
32098117--32098214	27	3.5	28	90	2	135	26	13	28	31	1.94
32098145--32098227	27	3.0	27	87	5	96	30	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32098117--32098228	28	4.0	27	83	6	98	28	12	25	33	1.92
32099932--32099956	13	1.9	13	100	0	50	32	4	24	40	1.73
32101058--32101177	44	2.8	43	76	10	138	25	16	27	30	1.97
32107516--32107579	32	2.0	32	100	0	128	50	0	21	28	1.49
32110551--32110723	46	3.7	46	78	10	190	23	20	26	29	1.99
32110548--32110718	93	1.8	93	91	0	279	22	21	27	28	1.99
32118140--32118312	46	3.7	46	80	10	208	21	20	27	30	1.98
32118137--32118307	93	1.8	93	92	0	288	21	20	28	29	1.98
32118537--32118574	19	2.0	20	85	15	53	36	0	23	39	1.55
32122682--32122760	37	2.1	37	90	0	122	25	31	18	24	1.98
32122878--32123279	47	8.6	47	92	2	657	29	29	7	32	1.85
32123504--32123688	79	2.3	82	83	7	229	25	27	22	24	2.00
32123504--32123688	40	4.6	41	80	9	204	25	27	22	24	2.00
32128632--32128719	43	2.0	43	100	0	176	28	11	27	32	1.91
32129042--32129162	65	1.9	64	89	5	190	23	5	16	54	1.63
32131519--32131568	18	2.8	18	100	0	100	42	12	22	24	1.87
32135598--32136081	123	3.9	123	98	0	923	36	8	26	29	1.85
32144488--32144523	18	2.0	18	88	0	54	44	11	11	33	1.75
32145203--32145256	28	2.0	27	85	3	72	16	14	31	37	1.89
32145211--32145280	27	2.5	28	81	9	81	12	17	35	34	1.88
32148052--32148089	18	2.1	18	85	9	51	39	7	18	34	1.80
32168994--32169054	30	2.0	30	87	0	86	37	8	24	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32173746--32174156	47	8.7	49	75	11	310	27	18	29	24	1.98
32182520--32182694	27	6.4	27	81	3	172	29	26	14	28	1.95
32182538--32182693	82	1.9	81	84	6	208	28	27	15	28	1.96
32183449--32183479	2	15.5	2	93	0	53	48	0	3	48	1.17
32184214--32184253	21	2.0	20	85	5	53	17	20	0	62	1.33
32198810--32199079	46	5.7	47	75	11	223	21	29	21	28	1.98
32215305--32215342	14	2.9	13	81	11	51	57	10	13	18	1.63
32216116--32216279	46	3.6	46	76	12	151	23	28	21	25	1.99
32217003--32217027	12	2.1	12	100	0	50	60	16	8	16	1.58
32227812--32227841	13	2.3	13	94	0	51	13	33	33	20	1.91
32230661--32230721	30	2.0	30	83	0	77	31	22	8	37	1.84
32241628--32241666	17	2.3	17	86	8	53	17	25	28	28	1.98
32242566--32242607	20	2.2	20	86	4	59	38	16	4	40	1.70
32245736--32245920	79	2.3	81	83	7	227	24	22	27	25	2.00
32245737--32245920	40	4.6	40	80	9	198	25	22	27	25	2.00
32245789--32245953	79	2.1	79	82	6	192	26	20	27	25	1.99
32253671--32253855	79	2.3	81	83	7	227	24	22	27	24	2.00
32253672--32253855	40	4.6	40	82	9	207	25	22	27	24	2.00
32253724--32253888	79	2.1	79	83	6	201	26	21	27	24	1.99
32256509--32256591	41	2.0	41	97	0	157	40	13	21	24	1.89
32260293--32260321	15	1.9	15	100	0	58	27	20	17	34	1.95
32267864--32267910	23	2.0	23	95	0	85	36	8	19	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32270454--32270590	55	2.5	55	73	9	138	37	18	22	20	1.94
32272930--32272981	18	2.9	17	83	8	59	21	40	23	15	1.91
32279925--32280025	38	2.6	38	85	6	123	24	22	24	27	2.00
32279963--32280044	38	2.2	38	88	4	121	23	21	21	32	1.98
32281882--32281993	27	4.2	26	79	7	98	38	23	21	16	1.93
32289645--32289753	27	4.0	26	79	10	112	36	21	23	18	1.95
32313034--32313169	26	5.3	26	79	3	145	28	20	21	29	1.98
32313034--32313169	52	2.7	51	85	5	179	28	20	21	29	1.98
32313219--32313293	20	3.8	20	91	6	111	34	18	9	37	1.83
32313219--32313274	11	5.5	11	71	16	57	32	19	10	37	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295