genome.fa.s7.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  168  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53203147--53203330	54	3.4	54	78	3	174	28	10	21	39	1.86
53203148--53203297	81	1.9	81	87	5	223	28	8	22	41	1.82
53203147--53203330	81	2.3	81	82	9	216	28	10	21	39	1.86
53203168--53203337	27	6.3	26	69	16	105	29	11	22	37	1.89
53203329--53203553	27	8.3	27	88	2	272	39	8	24	28	1.83
53203329--53203553	81	2.8	81	88	1	317	39	8	24	28	1.83
53203313--53203573	81	3.2	80	78	8	262	38	8	22	30	1.84
53205825--53205903	31	2.5	31	93	0	131	26	27	18	26	1.98
53206102--53206185	25	3.4	24	82	9	89	25	21	23	29	1.99
53206118--53206184	25	2.7	25	92	0	107	22	22	28	26	1.99
53206997--53207058	27	2.3	27	80	5	72	22	24	17	35	1.95
53207112--53207219	27	3.9	27	78	13	94	31	8	18	41	1.80
53207092--53207329	110	2.2	109	79	6	259	30	9	20	39	1.84
53207161--53207359	27	7.3	27	74	6	134	29	9	20	40	1.84
53207358--53207581	27	8.3	27	78	4	229	39	7	25	28	1.83
53207347--53207581	107	2.2	106	82	8	294	38	8	24	28	1.84
53210786--53210852	33	2.0	33	100	0	134	29	22	8	38	1.85
53220286--53220463	45	3.8	49	76	15	189	28	30	20	20	1.98
53220293--53220463	93	1.8	92	93	1	297	28	30	20	21	1.98
53227804--53227975	93	1.8	93	93	2	301	27	29	21	21	1.99
53227797--53227972	46	3.8	46	78	14	200	28	28	21	21	1.98
53227846--53227984	47	3.0	46	75	16	144	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53234057--53234318	39	6.6	39	82	9	236	25	26	20	27	1.99
53234057--53234267	40	5.3	38	85	7	244	26	26	20	27	1.99
53234092--53234267	79	2.2	79	93	2	300	25	27	19	27	1.99
53234092--53234280	39	4.8	40	90	3	285	25	26	20	27	1.99
53242030--53242292	40	6.6	40	81	12	253	24	26	21	27	1.99
53242065--53242241	79	2.2	80	94	1	311	24	27	20	27	1.99
53242030--53242293	119	2.2	122	86	9	368	24	26	21	27	1.99
53242065--53242293	79	2.9	80	84	10	294	24	27	21	27	1.99
53243372--53243396	13	1.9	13	100	0	50	0	8	4	88	0.64
53246510--53246691	40	4.6	40	93	2	296	25	27	22	24	2.00
53251281--53251498	110	2.0	110	94	0	382	29	15	13	41	1.85
53270994--53271224	40	5.8	41	80	5	267	26	27	21	24	1.99
53270975--53271224	80	3.2	80	90	1	378	27	27	20	24	1.99
53274321--53274505	40	4.7	40	83	6	225	25	27	22	24	2.00
53274321--53274505	79	2.3	82	83	7	229	25	27	22	24	2.00
53278740--53278768	15	2.0	15	93	6	51	27	0	17	55	1.42
53282436--53282486	26	2.0	26	96	0	93	9	19	33	37	1.85
53284262--53284306	19	2.4	19	80	0	54	42	13	15	28	1.85
53291394--53291461	29	2.3	29	85	5	93	27	30	13	27	1.94
53291283--53291610	174	1.9	174	96	0	611	31	24	14	29	1.94
53291570--53291641	29	2.5	30	82	13	96	30	29	12	27	1.93
53303369--53303425	26	2.2	26	81	9	62	29	19	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53314158--53314227	28	2.5	28	88	9	99	31	27	14	27	1.95
53318542--53318608	24	2.8	25	81	4	84	19	22	17	40	1.92
53335468--53335525	28	2.1	28	86	0	80	29	15	12	43	1.83
53340595--53340717	28	4.4	28	89	2	167	33	27	12	26	1.92
53348794--53348916	28	4.4	28	90	2	176	33	28	12	26	1.92
53352801--53353018	39	5.6	38	87	2	258	29	27	21	21	1.98
53352843--53353018	78	2.2	78	93	3	300	28	27	21	22	1.99
53352801--53353018	117	1.8	119	85	7	311	29	27	21	21	1.98
53358963--53359138	46	3.8	46	78	4	192	28	28	21	21	1.98
53358971--53359142	93	1.8	93	91	0	281	27	29	22	20	1.99
53374265--53374365	28	3.6	28	83	0	130	26	32	13	26	1.94
53376348--53376572	40	5.7	40	84	5	278	25	22	26	25	2.00
53376348--53376572	119	1.9	120	83	6	296	25	22	26	25	2.00
53376348--53376572	79	2.8	79	84	6	294	25	22	26	25	2.00
53380504--53380675	40	4.3	40	87	2	213	25	27	21	25	1.99
53380504--53380728	80	2.8	80	80	6	215	25	27	21	25	2.00
53387496--53387719	40	5.7	40	83	6	260	25	22	26	25	2.00
53387496--53387752	79	3.3	79	82	6	288	26	22	26	24	2.00
53389188--53389227	21	1.9	21	84	0	53	40	22	7	30	1.81
53396423--53396523	28	3.6	28	90	0	157	26	33	15	23	1.95
53401416--53401487	33	2.2	33	84	0	99	29	25	20	25	1.99
53405047--53405141	40	2.4	40	87	0	127	32	27	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53425208--53425412	40	5.2	40	87	5	283	23	23	27	24	2.00
53425196--53425412	80	2.7	80	87	5	323	24	23	27	24	2.00
53430539--53430580	21	2.0	21	85	0	57	21	16	42	19	1.89
53455618--53455826	39	5.3	39	90	4	307	25	22	27	24	2.00
53455604--53455826	77	2.8	79	87	7	312	26	21	27	24	2.00
53455570--53455826	39	6.6	39	85	9	230	26	21	27	24	1.99
53463633--53463840	39	5.3	39	88	2	285	26	22	26	24	2.00
53471916--53472230	96	3.3	94	91	3	513	32	8	30	28	1.86
53471916--53472230	47	6.6	47	92	1	495	32	8	30	28	1.86
53488545--53488599	21	2.5	22	85	2	76	18	32	34	14	1.91
53496337--53496365	14	2.0	15	93	6	51	51	20	0	27	1.47
53501586--53501656	34	2.1	33	86	2	97	26	23	23	25	2.00
53507633--53507788	84	1.9	84	83	0	204	30	25	17	27	1.97
53507637--53507791	43	3.7	42	78	6	152	30	25	17	27	1.97
53509366--53509452	42	2.1	42	100	0	174	43	19	6	29	1.77
53521930--53522100	93	1.8	93	89	0	270	29	30	19	21	1.97
53521925--53522096	46	3.7	46	74	16	165	30	29	19	20	1.97
53527442--53527617	46	3.8	46	79	4	201	29	28	20	21	1.98
53527495--53527636	46	3.1	44	71	19	103	29	28	19	22	1.98
53529186--53529247	27	2.3	27	97	2	115	24	37	4	33	1.77
53530035--53530150	58	2.0	58	96	0	214	27	24	18	29	1.98
53530093--53530207	43	2.7	42	80	6	133	31	22	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53535035--53535072	19	2.0	19	89	0	58	42	7	18	31	1.79
53540144--53540211	16	4.2	16	96	0	127	25	0	35	39	1.56
53540475--53540661	61	3.1	61	69	17	181	49	6	2	41	1.40
53540546--53540597	15	3.6	15	80	12	56	53	1	0	44	1.11
53540430--53540726	59	5.0	58	66	18	164	50	4	3	42	1.37
53540430--53540722	120	2.4	121	93	1	482	50	4	3	42	1.38
53554565--53554655	42	2.2	43	82	4	105	30	13	24	31	1.93
53556047--53556222	46	3.8	46	79	4	201	21	19	28	29	1.98
53556043--53556214	93	1.8	93	91	0	281	21	20	29	28	1.98
53562136--53562187	26	2.0	26	100	0	104	34	26	7	30	1.85
53569007--53569236	40	5.8	40	86	2	286	24	23	27	24	2.00
53572923--53572978	26	2.2	26	100	0	112	35	26	7	30	1.83
53573833--53573969	54	2.5	53	80	4	175	29	17	21	30	1.96
53576000--53576175	27	6.5	27	81	7	153	26	15	27	30	1.96
53576001--53576154	82	1.9	80	84	5	202	27	15	26	30	1.96
53576027--53576175	55	2.8	53	82	8	158	28	15	27	28	1.96
53584565--53584742	27	6.6	26	80	6	169	26	16	28	28	1.97
53584566--53584721	82	1.9	81	86	3	224	26	16	28	28	1.97
53584562--53584742	82	2.2	81	82	2	220	26	16	28	28	1.97
53586323--53586380	6	9.5	6	76	10	55	15	5	0	79	0.90
53586324--53586363	5	7.8	5	84	15	55	17	2	0	80	0.83
53586335--53586395	32	1.9	32	83	6	79	18	4	0	77	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53589301--53589333	13	2.6	13	90	4	50	39	0	12	48	1.40
53590766--53590804	18	2.2	18	95	0	69	38	7	7	46	1.61
53592844--53593042	6	32.3	6	72	16	149	48	13	18	19	1.80
53592853--53593042	43	4.4	43	78	11	172	48	13	18	18	1.80
53592871--53592979	25	4.6	25	74	19	117	49	12	19	18	1.79
53592871--53593042	62	2.7	62	90	5	254	48	13	19	18	1.81
53592963--53593042	25	3.2	25	87	5	110	47	15	18	18	1.83
53592904--53593014	19	5.6	19	73	20	95	47	14	18	18	1.82
53593188--53593329	67	2.1	67	85	5	185	30	21	28	19	1.97
53593259--53593310	27	2.0	26	84	3	68	34	21	26	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295