genome.fa.s7.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  216  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68881038--68881329	96	3.0	96	93	1	469	31	9	31	27	1.89
68884201--68884312	27	4.1	27	84	7	138	15	24	23	37	1.93
68884201--68884312	54	2.1	54	88	3	163	15	24	23	37	1.93
68890677--68890861	79	2.3	82	81	7	220	25	27	22	24	2.00
68890658--68890861	40	5.1	40	80	8	220	25	27	22	25	2.00
68898582--68898763	40	4.6	39	81	8	201	24	28	23	24	2.00
68898582--68898764	78	2.3	80	83	7	223	24	27	22	24	2.00
68911954--68912077	47	2.6	47	87	2	187	27	19	25	28	1.99
68918365--68918406	20	2.0	22	90	9	70	4	30	11	52	1.59
68919693--68919747	27	2.0	27	100	0	110	45	7	7	40	1.60
68925827--68926053	49	4.6	49	85	2	274	31	28	15	25	1.96
68928174--68928240	15	4.5	15	78	15	68	59	17	14	7	1.58
68928174--68928240	30	2.3	30	80	15	77	59	17	14	7	1.58
68931240--68931477	49	4.8	49	85	2	296	29	27	17	25	1.98
68931240--68931484	99	2.5	100	83	2	296	28	27	17	25	1.98
68933814--68933851	19	2.0	19	85	10	51	68	0	10	21	1.19
68938028--68938151	62	2.0	62	100	0	248	33	22	11	32	1.90
68951207--68951301	50	1.9	50	88	0	145	36	15	14	32	1.89
68951254--68951335	42	2.0	42	85	0	110	34	23	15	26	1.95
68954183--68954475	48	6.6	42	70	14	144	29	26	17	27	1.97
68954183--68954475	131	2.2	136	81	7	330	29	26	17	27	1.97
68957656--68957796	49	2.8	50	82	6	189	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68957651--68957790	51	2.8	50	80	5	176	25	18	25	30	1.98
68965524--68965656	46	2.9	47	89	3	198	20	21	26	31	1.98
68967673--68967839	90	1.9	90	93	0	289	30	16	10	42	1.82
68971816--68971841	13	2.0	13	100	0	52	23	0	15	61	1.33
68976884--68977002	43	2.8	41	79	5	121	31	13	24	30	1.93
68980705--68980888	96	1.9	97	87	3	273	32	25	14	28	1.95
68982475--68982579	27	3.9	27	86	9	135	34	21	24	19	1.96
68982683--68982758	26	2.8	27	84	4	91	30	11	22	35	1.90
68985040--68985217	27	6.6	26	82	6	178	26	16	28	28	1.97
68985041--68985196	82	1.9	81	86	3	224	26	16	28	28	1.97
68985037--68985217	82	2.2	81	82	2	220	27	16	27	28	1.97
68985122--68985228	27	3.9	27	83	1	79	26	15	28	29	1.96
68987432--68987539	26	4.2	26	93	0	180	36	23	7	33	1.83
68988231--68988307	15	5.3	15	68	22	65	72	1	3	22	1.08
68988239--68988326	18	5.2	16	73	20	63	72	1	5	20	1.11
68989695--68989770	33	2.3	33	86	2	100	31	14	21	32	1.93
68992186--68992223	13	2.8	13	88	4	58	44	13	0	42	1.43
68992359--68992392	17	1.9	18	88	5	52	20	20	5	52	1.67
68998505--68998689	79	2.3	82	83	7	229	25	27	23	24	2.00
68998505--68998689	40	4.7	40	83	6	225	25	27	23	24	2.00
69003264--69003436	93	1.9	93	87	0	256	20	20	29	28	1.98
69012072--69012125	24	2.2	24	84	12	67	29	37	16	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69019080--69019139	30	2.0	30	93	0	102	16	10	23	50	1.75
69022425--69022557	45	3.0	45	80	4	117	23	19	24	32	1.98
69024902--69025015	43	2.7	42	82	2	147	28	15	25	30	1.96
69028155--69028179	13	1.9	13	100	0	50	36	0	16	48	1.46
69031936--69031992	29	2.0	29	92	0	96	43	29	5	21	1.74
69036827--69036872	21	2.2	21	92	3	76	23	19	13	43	1.86
69039433--69039503	24	3.0	24	87	4	99	15	42	4	38	1.67
69046452--69046546	34	2.8	34	73	19	92	29	22	21	27	1.99
69047041--69047070	12	2.5	12	100	0	60	0	26	43	30	1.55
69054694--69054875	40	4.6	40	91	3	280	24	21	25	28	1.99
69056939--69056976	20	1.9	20	88	0	58	26	26	0	47	1.52
69058372--69058408	16	2.4	16	86	8	51	48	0	8	43	1.32
69058688--69058717	11	2.7	11	94	0	51	20	16	43	20	1.88
69061376--69061634	47	5.5	47	88	1	365	28	29	9	32	1.88
69063014--69063038	13	1.9	13	100	0	50	36	16	16	32	1.90
69064588--69064635	25	1.9	25	86	0	69	31	22	16	29	1.96
69064766--69064835	25	2.8	25	84	6	97	28	24	21	25	1.99
69065056--69065139	31	2.7	31	81	5	109	29	17	28	23	1.97
69067228--69067295	32	2.1	32	94	0	118	25	20	27	26	1.99
69074404--69074459	11	5.5	11	71	16	57	35	12	19	32	1.89
69074393--69074459	20	3.3	20	93	0	116	34	11	20	32	1.90
69074512--69074602	23	3.9	23	92	5	139	25	23	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69074796--69074859	31	2.1	31	90	0	101	35	15	25	23	1.94
69080102--69080170	32	2.2	32	94	0	120	26	20	28	24	1.99
69082813--69082888	34	2.2	34	81	9	91	26	1	23	48	1.59
69082932--69083061	34	3.9	32	82	6	152	38	0	16	43	1.54
69083113--69083366	126	2.0	126	86	1	348	37	16	16	29	1.91
69094670--69094789	39	3.1	39	92	2	206	20	25	31	21	1.98
69098115--69098265	27	5.5	27	92	3	248	26	14	28	30	1.95
69098115--69098265	55	2.7	55	95	0	266	26	14	28	30	1.95
69101058--69101115	25	2.3	23	78	16	62	55	1	0	43	1.10
69101486--69101527	18	2.4	18	92	4	68	40	9	28	21	1.84
69103020--69103140	55	2.3	52	91	4	188	64	2	1	31	1.16
69105822--69105859	20	1.9	20	88	0	58	42	7	0	50	1.31
69106880--69106914	17	2.0	18	88	5	54	34	8	2	54	1.46
69110401--69110443	21	2.1	21	86	4	61	60	6	0	32	1.23
69110584--69110631	23	2.0	25	84	8	64	31	14	6	47	1.69
69111794--69111844	24	2.2	24	85	3	68	66	5	15	11	1.41
69114078--69114198	39	3.1	39	92	0	197	23	28	24	22	1.99
69116106--69116421	138	2.3	138	84	1	411	29	25	15	29	1.96
69119944--69120073	42	3.1	42	81	5	131	45	16	21	16	1.85
69120731--69120756	13	2.0	13	100	0	52	46	15	7	30	1.74
69125875--69125935	30	2.1	29	93	3	104	26	16	21	36	1.94
69131998--69132081	31	2.7	31	85	1	116	28	22	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69132249--69132316	24	2.8	24	88	2	100	25	23	26	25	2.00
69132522--69132678	27	5.8	27	86	5	108	25	22	18	33	1.97
69132521--69132681	54	3.0	54	89	3	236	24	22	18	33	1.97
69132549--69132681	27	4.9	27	94	0	230	24	23	18	34	1.96
69132686--69132810	27	4.6	27	81	4	126	31	6	20	41	1.78
69132670--69132810	54	2.6	54	78	2	151	29	7	22	40	1.81
69132805--69132942	27	5.1	27	90	0	222	42	7	21	28	1.80
69132771--69132936	81	2.0	81	85	0	224	42	6	19	31	1.77
69132787--69132942	54	2.9	54	88	3	233	41	6	20	31	1.77
69132789--69132938	81	1.9	81	89	0	237	42	6	19	32	1.77
69135250--69135324	31	2.4	31	93	0	123	25	24	20	30	1.98
69135545--69135614	25	2.8	25	91	0	104	24	22	24	28	1.99
69135818--69136059	27	9.0	27	88	2	301	25	20	17	36	1.94
69136048--69136201	27	5.8	27	82	4	170	28	9	21	40	1.83
69136025--69136201	81	2.2	80	84	4	223	28	10	20	41	1.84
69136203--69136347	27	5.4	27	88	0	227	42	9	20	27	1.83
69141159--69141331	46	3.7	46	76	10	181	22	16	30	30	1.96
69146677--69146852	46	3.8	46	77	15	182	21	18	29	30	1.97
69146673--69146844	93	1.8	93	89	0	272	21	18	30	29	1.97
69151778--69152024	50	5.0	49	79	3	278	26	19	25	28	1.99
69151780--69151961	101	1.8	101	92	0	310	25	19	25	28	1.99
69164530--69164791	27	9.6	27	91	3	398	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69164530--69164791	55	4.8	55	96	0	461	26	14	28	30	1.95
69167273--69167548	94	2.9	94	94	0	471	29	10	19	39	1.86
69175075--69175315	94	2.6	94	94	0	419	31	10	18	39	1.85
69177740--69177852	28	4.1	28	84	1	147	38	19	23	18	1.93
69177740--69177852	56	2.0	55	87	1	163	38	19	23	18	1.93
69179079--69179135	18	3.2	18	74	16	55	66	0	28	5	1.13
69179079--69179135	12	4.6	13	70	16	50	66	0	28	5	1.13
69179719--69179761	13	3.5	13	75	18	56	48	13	0	37	1.43
69179719--69179773	23	2.4	23	90	0	83	45	12	0	41	1.42
69180744--69180809	28	2.4	28	87	2	89	33	22	24	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295