genome.fa.s7.2.7.7.80.10.50.1000.260.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  260  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83244091--83244268	17	10.2	17	74	10	110	17	19	26	37	1.93
83244184--83244268	36	2.4	35	84	5	107	16	20	25	37	1.93
83246603--83246658	21	2.6	22	88	5	89	30	32	8	28	1.88
83259017--83259058	21	2.0	22	90	4	68	14	4	11	69	1.34
83262018--83262048	16	2.0	16	93	6	55	64	0	0	35	0.94
83262017--83262054	16	2.3	17	82	17	53	57	0	0	42	0.98
83262044--83262102	19	3.1	19	85	11	68	37	0	6	55	1.26
83262044--83262103	20	3.0	20	81	11	63	36	0	6	56	1.26
83266090--83266305	39	5.5	40	80	9	221	25	21	27	25	1.99
83266086--83266270	79	2.3	78	84	5	230	25	21	27	24	1.99
83266086--83266305	79	2.8	79	77	13	229	26	20	27	25	1.99
83279337--83279402	33	1.9	33	84	9	87	40	4	21	33	1.73
83288134--83288328	50	3.9	50	87	2	275	23	28	18	29	1.98
83288137--83288328	100	1.9	100	91	0	312	23	28	18	29	1.98
83294660--83294814	64	2.5	63	89	2	231	40	5	8	45	1.58
83295191--83295306	33	3.5	33	69	0	97	28	13	36	21	1.92
83297946--83298007	25	2.5	24	80	15	63	59	1	9	29	1.38
83297952--83298004	26	2.1	25	82	10	63	60	0	9	30	1.28
83298086--83298132	23	2.0	23	83	0	58	55	8	6	29	1.55
83299757--83300357	176	3.4	175	82	4	701	27	24	17	30	1.97
83300301--83300477	45	3.7	44	65	21	106	27	26	17	28	1.98
83300292--83300479	99	1.9	99	90	2	297	26	26	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83303173--83303355	40	4.6	40	77	10	187	26	27	20	25	1.99
83303175--83303323	79	1.9	80	84	6	205	26	25	21	26	1.99
83303173--83303350	79	2.2	80	80	8	202	27	26	20	25	1.99
83316774--83316820	23	2.0	23	83	0	58	55	8	6	29	1.55
83324854--83324902	22	2.2	23	82	10	57	61	0	14	24	1.33
83326388--83326432	18	2.5	19	78	10	58	37	6	0	55	1.26
83326448--83326534	13	6.2	13	71	21	68	34	2	0	63	1.07
83326633--83326686	21	2.6	21	77	13	58	33	1	5	59	1.31
83331395--83331617	40	5.6	40	80	10	228	21	22	29	26	1.99
83331399--83331617	80	2.8	80	87	5	302	21	23	29	25	1.99
83340446--83340501	27	2.0	27	93	3	94	46	16	17	19	1.84
83340942--83340978	16	2.2	16	95	4	65	59	0	0	40	0.97
83342586--83342658	38	2.0	37	94	5	130	24	13	9	52	1.71
83347531--83347640	42	2.6	42	80	9	118	24	17	24	33	1.96
83356011--83356064	28	1.9	28	84	0	72	29	27	16	25	1.97
83365857--83365958	42	2.4	43	78	1	107	22	17	26	33	1.96
83365812--83365970	43	3.7	44	74	9	123	22	16	28	32	1.96
83369002--83369063	30	2.0	31	84	6	81	40	0	11	48	1.39
83369143--83369172	6	5.0	6	100	0	60	16	0	0	83	0.65
83371530--83371598	24	2.8	25	77	16	74	24	0	7	68	1.15
83372180--83372289	26	4.2	26	95	0	175	34	5	24	35	1.79
83374021--83374068	21	2.3	21	85	7	62	12	2	52	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83374075--83374362	137	2.1	137	97	0	540	24	18	25	31	1.97
83375558--83375604	22	2.1	22	84	0	58	14	31	21	31	1.94
83381740--83381782	15	2.9	14	83	10	50	34	0	9	55	1.32
83381750--83381782	14	2.3	15	89	5	50	30	0	6	63	1.18
83381990--83382022	13	2.3	15	90	10	52	54	0	3	42	1.15
83382387--83383553	388	3.0	389	99	0	2295	40	14	12	32	1.83
83389061--83389097	20	1.9	18	89	10	56	43	0	21	35	1.53
83395369--83395418	26	2.0	24	88	7	73	64	6	0	30	1.18
83395389--83395447	21	2.8	21	78	12	59	69	8	0	22	1.15
83404327--83404355	5	5.8	5	100	0	58	0	20	0	79	0.74
83405496--83405534	20	1.9	21	89	5	62	35	0	53	10	1.35
83418081--83418179	24	4.0	24	79	9	103	23	22	19	35	1.96
83419896--83420032	39	3.5	39	76	4	139	41	18	7	32	1.78
83420926--83420951	6	4.3	6	100	0	52	19	50	0	30	1.48
83422955--83422999	22	2.0	22	86	0	63	33	13	8	44	1.75
83424220--83424248	13	2.2	13	100	0	58	6	48	0	44	1.29
83425382--83425440	29	2.0	29	93	0	100	42	8	22	27	1.82
83426939--83426992	16	3.4	16	89	0	81	38	0	25	35	1.57
83427162--83427221	25	2.3	26	83	11	70	51	0	3	45	1.17
83427306--83427354	21	2.3	21	86	10	64	63	2	0	34	1.06
83429152--83429296	70	2.1	70	94	0	254	31	18	14	35	1.91
83431450--83431481	16	2.0	16	100	0	64	68	12	6	12	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83432369--83432415	20	2.4	20	85	3	69	51	8	6	34	1.58
83437271--83437309	12	3.2	12	81	0	51	48	12	12	25	1.77
83437260--83437321	24	2.6	24	82	10	81	50	12	9	27	1.72
83439215--83439279	28	2.3	29	84	7	80	30	21	3	44	1.67
83443353--83443705	196	1.8	195	86	4	514	36	15	16	30	1.90
83446340--83446390	20	2.4	21	81	15	61	60	7	0	31	1.25
83451782--83451889	43	2.5	44	81	1	119	28	23	25	22	1.99
83456545--83456582	20	1.9	20	84	10	51	47	10	13	28	1.76
83457584--83457617	8	4.2	8	100	0	68	76	0	0	23	0.79
83457570--83457620	14	3.5	14	84	10	66	68	0	1	29	1.00
83457645--83457680	15	2.3	15	90	9	54	69	0	0	30	0.89
83471927--83471970	19	2.2	20	80	11	56	52	4	9	34	1.54
83473729--83474579	94	9.1	93	83	2	927	28	19	19	32	1.96
83473790--83474411	44	13.3	44	65	20	194	27	20	19	32	1.97
83473835--83474370	50	11.3	49	64	23	184	28	20	19	31	1.97
83473782--83474579	282	2.8	282	91	1	1242	28	20	19	31	1.97
83475061--83475105	11	3.9	11	80	11	54	35	0	2	62	1.08
83477278--83477540	46	5.7	46	89	0	366	39	15	23	21	1.92
83477229--83477530	138	2.3	130	86	5	390	39	14	23	22	1.91
83478225--83478477	94	2.7	94	81	2	276	30	22	16	30	1.96
83487178--83487242	19	3.4	19	76	19	64	56	3	6	33	1.39
83488723--83488777	25	2.2	25	77	6	58	32	1	7	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83493444--83493475	12	2.7	12	95	0	55	0	3	3	93	0.40
83493444--83493477	13	2.7	13	90	4	52	0	2	5	91	0.51
83497689--83497765	10	8.6	9	70	12	52	42	0	1	55	1.07
83497691--83497765	19	4.2	18	72	14	66	42	0	1	56	1.08
83497708--83497766	27	2.2	27	81	3	66	45	0	1	52	1.10
83499739--83499772	17	2.1	16	88	5	50	23	0	0	76	0.79
83501701--83501758	26	2.2	26	78	6	64	36	15	8	39	1.78
83501891--83501923	6	5.5	6	96	0	57	15	18	0	66	1.25
83501891--83501931	18	2.3	18	86	0	55	12	21	0	65	1.25
83505183--83505247	32	2.0	32	93	0	112	26	9	24	40	1.85
83513132--83513175	23	1.9	23	100	0	88	27	22	11	38	1.88
83513332--83513389	3	19.3	3	87	7	82	31	3	1	63	1.21
83513336--83513399	30	2.1	30	100	0	128	26	6	3	64	1.33
83513351--83513399	15	3.3	15	77	11	64	24	8	4	63	1.40
83517001--83517045	22	2.1	22	84	12	58	55	0	8	35	1.31
83517626--83517690	25	2.9	23	82	15	75	66	9	0	24	1.21
83517652--83517690	19	2.0	20	95	5	71	71	10	0	17	1.12
83520718--83520789	37	1.9	37	85	0	99	34	19	23	22	1.96
83528414--83528438	13	1.9	13	100	0	50	32	0	20	48	1.50
83529470--83529572	43	2.3	44	81	6	120	35	14	28	21	1.93
83545054--83545132	28	2.8	29	78	16	76	41	0	3	54	1.18
83551758--83551815	27	2.1	27	84	6	73	48	5	20	25	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83553142--83553176	18	1.9	18	100	0	70	34	17	14	34	1.90
83553357--83553465	45	2.4	45	86	6	157	44	20	17	18	1.88
83553443--83553467	12	2.1	12	100	0	50	40	20	24	16	1.91
83553577--83553633	22	2.5	24	72	16	57	29	19	3	47	1.66
83555126--83555190	30	2.0	34	82	14	84	0	27	7	64	1.20
83555193--83555247	16	3.5	15	76	14	58	12	10	0	76	1.02
83561716--83561746	6	5.2	6	92	0	53	3	48	0	48	1.17
83566811--83566881	28	2.5	28	88	0	97	26	35	14	23	1.93
83567080--83567111	16	2.0	16	100	0	64	6	12	25	56	1.59
83568443--83568738	69	4.2	71	76	4	269	22	20	25	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295