genome.fa.s7.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  194  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61917590--61917653	29	2.2	29	85	0	83	28	18	23	29	1.98
61921977--61922019	16	2.7	16	92	0	68	11	25	32	30	1.91
61921992--61922092	38	2.6	39	85	1	141	15	21	29	32	1.95
61923123--61923160	18	2.1	18	85	9	51	34	2	15	47	1.60
61929919--61929967	25	2.0	25	83	0	62	36	6	14	42	1.70
61930066--61930103	20	1.9	20	88	0	58	18	13	31	36	1.89
61935611--61935745	46	2.9	46	81	9	152	29	20	27	22	1.98
61936791--61936884	43	2.2	44	81	9	113	13	26	35	24	1.93
61936688--61936898	109	1.9	109	89	1	325	15	28	32	22	1.95
61949479--61949548	27	2.6	27	90	0	113	44	1	17	37	1.57
61958103--61958143	21	1.9	22	90	5	66	31	0	7	60	1.24
61965839--61965910	23	3.1	23	80	9	83	30	11	4	54	1.55
61972978--61973022	17	2.6	18	86	10	67	51	6	8	33	1.59
61973623--61973654	15	2.0	17	88	11	50	62	6	0	31	1.20
61974162--61974203	11	3.9	11	75	6	50	66	0	33	0	0.92
61974664--61974715	19	2.8	18	94	5	95	3	0	46	50	1.20
61975547--61976239	72	9.5	72	91	2	1055	32	22	17	28	1.96
61975542--61977079	144	10.4	145	84	7	1750	32	21	16	29	1.95
61975547--61977170	216	7.2	216	82	11	1767	33	21	16	29	1.95
61976255--61976408	73	2.1	73	84	7	204	32	18	16	31	1.94
61976339--61976505	86	1.9	86	83	4	212	35	19	15	29	1.92
61976414--61976777	72	4.9	73	85	6	446	32	21	15	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61976781--61977083	71	4.1	73	86	7	400	33	20	15	31	1.93
61988918--61988962	17	2.6	18	89	10	76	51	8	8	31	1.64
61989564--61989595	15	2.0	17	88	11	50	62	6	0	31	1.20
61990605--61990650	20	2.3	20	92	0	74	4	0	26	69	1.07
61992108--61992285	27	6.6	27	83	3	196	29	27	15	27	1.96
61992129--61992284	82	1.9	81	86	3	224	29	27	15	27	1.96
62000168--62000230	25	2.4	28	89	7	96	30	26	15	26	1.96
62011789--62011984	38	5.1	39	78	18	191	25	25	26	23	2.00
62011809--62011984	78	2.3	76	81	16	195	26	25	25	23	2.00
62019422--62019609	39	4.8	39	86	4	229	22	22	28	26	1.99
62019422--62019609	79	2.4	79	83	6	240	22	22	28	26	1.99
62019427--62019633	39	5.3	39	86	5	129	24	22	26	26	2.00
62027521--62027705	40	4.7	41	88	4	238	23	22	27	26	1.99
62034577--62034624	20	2.4	20	86	6	62	33	8	20	37	1.83
62034672--62034779	25	4.4	24	88	5	137	27	22	22	27	1.99
62034987--62035050	31	2.1	31	87	0	92	40	15	20	23	1.90
62040133--62040172	18	2.3	18	95	4	73	15	27	22	35	1.94
62040532--62040698	27	6.2	27	78	0	163	25	14	17	42	1.87
62040544--62040696	54	2.8	54	86	0	189	26	13	16	43	1.85
62040853--62040971	45	2.7	45	90	1	195	28	26	15	29	1.96
62042451--62042503	24	2.2	24	79	0	61	41	3	41	13	1.62
62053289--62053466	27	6.6	27	80	5	153	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62053310--62053465	82	1.9	81	82	3	197	28	28	15	26	1.96
62061129--62061306	27	6.6	27	81	5	162	29	28	15	26	1.96
62061150--62061305	82	1.9	81	84	3	206	28	28	16	26	1.97
62067040--62067076	18	2.1	18	100	0	74	64	0	5	29	1.15
62070049--62070119	33	2.2	33	97	0	133	43	14	8	33	1.75
62075900--62076124	40	5.7	40	83	4	242	24	23	27	25	2.00
62084024--62084248	40	5.7	40	83	5	251	24	22	27	24	2.00
62084077--62084271	80	2.5	78	83	5	223	25	21	27	25	1.99
62087029--62087240	47	4.5	47	88	2	289	33	7	30	28	1.85
62094415--62094477	31	2.0	31	93	0	108	44	11	17	26	1.82
62096794--62096832	20	2.0	20	89	0	60	51	0	12	35	1.40
62100980--62101480	48	10.4	48	92	0	804	34	8	27	29	1.86
62101653--62101755	37	2.8	37	96	0	188	23	20	32	24	1.98
62103037--62103267	40	5.8	40	93	1	358	20	22	30	25	1.98
62103711--62103750	17	2.4	17	100	0	80	45	20	12	22	1.84
62106822--62108201	48	29.4	48	89	4	1962	35	7	27	29	1.85
62108374--62108476	37	2.8	37	95	0	179	23	19	32	25	1.98
62114703--62114875	46	3.7	46	75	13	183	23	20	26	30	1.98
62114700--62114870	93	1.8	93	92	0	288	22	20	26	29	1.98
62117677--62119648	47	41.4	47	94	2	3404	31	8	29	29	1.87
62117677--62119648	96	20.7	95	95	2	3401	31	8	29	29	1.87
62117677--62119648	143	13.8	143	94	2	3400	31	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62118499--62118574	22	3.3	22	64	10	62	28	10	31	28	1.90
62119767--62119868	37	2.8	37	95	0	177	24	18	30	26	1.98
62122351--62122474	27	4.6	27	77	8	119	38	23	9	28	1.86
62122402--62122490	27	3.3	26	78	6	88	40	19	8	31	1.82
62122344--62122520	54	3.3	54	76	7	180	38	22	9	29	1.85
62122497--62122880	27	14.2	27	84	1	446	30	20	7	42	1.78
62124753--62125014	39	6.7	40	88	5	315	26	22	27	24	2.00
62150015--62150072	30	1.9	30	89	0	89	32	10	25	31	1.89
62153045--62153341	80	3.7	80	88	3	406	22	22	28	26	1.99
62153045--62153307	40	6.6	40	92	0	411	21	22	28	26	1.99
62161206--62161462	40	6.5	40	88	2	351	22	24	28	24	2.00
62166763--62166815	25	2.2	25	86	3	72	26	15	5	52	1.64
62167326--62167415	41	2.2	41	86	4	119	41	12	26	20	1.87
62167543--62167720	74	2.4	75	85	6	229	21	35	3	39	1.70
62170834--62170911	33	2.4	33	84	6	104	39	19	11	29	1.87
62173656--62173694	19	2.0	19	95	5	69	69	5	25	0	1.09
62175339--62175364	12	2.2	12	100	0	52	11	0	15	73	1.11
62177168--62177240	35	2.1	35	89	0	110	49	9	6	34	1.62
62180150--62180215	28	2.4	28	92	0	105	33	12	25	28	1.92
62180241--62180490	51	4.9	51	91	1	394	32	13	24	29	1.94
62184023--62184127	39	2.6	39	86	5	122	25	22	26	24	2.00
62184036--62184127	39	2.3	40	88	5	134	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62183986--62184127	40	3.6	39	80	7	137	25	22	27	24	2.00
62183986--62184133	79	1.9	80	81	7	185	26	22	27	23	1.99
62184352--62184613	47	5.6	47	93	0	434	32	8	30	28	1.87
62189577--62189601	13	1.9	13	100	0	50	32	20	16	32	1.94
62190152--62190408	27	9.5	27	85	0	298	26	15	27	29	1.96
62190152--62190387	81	2.9	81	95	1	411	27	15	27	29	1.96
62197562--62197586	13	1.9	13	100	0	50	32	20	16	32	1.94
62198135--62198473	27	12.5	27	84	0	381	27	15	27	29	1.96
62198135--62198452	81	3.9	81	96	1	557	27	15	27	28	1.96
62200450--62200656	40	5.2	40	89	2	310	24	23	28	24	2.00
62200446--62200680	40	5.9	40	86	4	194	24	22	28	24	1.99
62223021--62223198	27	6.6	27	83	3	178	30	28	15	26	1.96
62223042--62223197	82	1.9	81	88	3	233	29	28	15	26	1.96
62227425--62227462	14	2.8	13	78	21	51	36	2	0	60	1.11
62229082--62229128	21	2.3	21	85	3	60	25	12	25	36	1.92
62230547--62230602	26	2.2	26	96	0	103	30	5	26	37	1.79
62236656--62236686	16	1.9	16	93	0	53	41	9	0	48	1.36
62241855--62241892	2	19.0	2	100	0	76	0	0	50	50	1.00
62245097--62245170	36	2.1	36	94	0	130	36	2	18	41	1.65
62245499--62245578	37	2.2	37	100	0	160	38	8	28	23	1.85
62247166--62247305	43	3.3	41	75	12	113	28	26	19	25	1.99
62247879--62247910	15	2.1	15	100	0	64	46	25	0	28	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62253736--62253775	6	6.7	6	100	0	80	0	17	0	82	0.67
62253742--62253781	18	2.2	18	90	0	62	2	17	2	77	0.99
62271072--62271105	2	17.0	2	100	0	68	0	50	0	50	1.00
62274820--62274865	23	2.0	23	91	0	74	34	21	13	30	1.91
62274825--62274898	23	3.2	23	82	1	76	28	17	16	37	1.91
62274856--62274901	24	1.9	24	95	0	83	26	15	15	43	1.85
62274891--62274927	17	2.2	17	100	0	74	27	8	5	59	1.48
62276233--62276271	12	3.4	11	86	10	51	41	7	20	30	1.80
62286335--62286681	27	12.8	27	89	0	460	29	22	7	40	1.81
62286500--62286827	27	12.1	27	82	4	169	36	21	6	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295