genome.fa.s7.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  113  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34047317--34047449	34	3.9	34	74	3	106	35	18	16	30	1.93
34047392--34047496	17	6.2	17	74	4	86	33	17	17	32	1.93
34047389--34047488	51	1.9	52	87	2	148	31	17	19	33	1.94
34047352--34047471	34	3.6	33	70	10	100	30	17	19	32	1.95
34047353--34047496	68	2.1	68	85	0	207	33	17	17	31	1.93
34066674--34066723	15	3.5	15	79	15	52	42	12	24	22	1.87
34066687--34066723	15	2.5	16	87	12	53	43	10	24	21	1.84
34070192--34070258	33	2.0	33	100	0	134	52	5	14	26	1.65
34070688--34070829	37	3.7	36	71	19	108	61	1	4	32	1.26
34070737--34070808	23	3.1	23	80	4	83	62	1	4	31	1.23
34070689--34070863	80	2.2	79	74	15	173	59	1	6	33	1.30
34072263--34072354	3	30.7	3	72	8	71	35	0	5	58	1.21
34074661--34074837	27	6.5	27	84	3	185	25	15	29	29	1.96
34074661--34074816	82	1.9	81	85	3	215	26	15	29	28	1.96
34074657--34074837	82	2.2	81	81	2	211	26	15	28	29	1.96
34082713--34082784	26	2.8	24	93	4	99	34	9	26	29	1.88
34082692--34082894	27	7.5	27	83	6	191	27	14	29	29	1.95
34095089--34095113	13	1.9	13	100	0	50	48	8	0	44	1.32
34097464--34097500	18	2.1	18	100	0	74	45	16	10	27	1.80
34098059--34098116	6	9.8	6	79	3	64	77	3	3	15	1.04
34098039--34098116	12	6.5	11	77	11	59	75	2	3	17	1.07
34099608--34099646	20	2.0	20	84	0	51	10	12	53	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34103433--34103470	13	2.9	13	100	0	76	47	7	0	44	1.32
34109100--34109136	19	1.9	19	88	0	56	83	0	16	0	0.64
34109100--34109142	10	4.3	10	82	8	52	81	0	18	0	0.69
34109100--34109145	23	2.0	23	86	4	65	80	0	19	0	0.71
34109464--34109514	12	4.1	12	74	18	50	47	0	1	50	1.12
34113301--34113426	28	4.5	28	92	2	191	32	27	12	26	1.93
34113875--34113904	14	2.1	14	100	0	60	43	0	6	50	1.28
34117543--34117636	33	2.9	33	74	18	99	27	27	21	23	1.99
34117574--34117628	29	1.9	28	88	3	83	25	29	23	21	1.99
34117888--34117934	24	2.0	24	83	8	60	29	21	19	29	1.97
34117908--34117959	25	2.1	25	85	3	70	26	19	21	32	1.97
34118164--34118359	27	7.3	27	84	0	221	25	20	18	35	1.95
34118163--34118388	54	4.2	54	84	3	260	25	18	18	37	1.94
34118315--34118658	27	12.7	27	80	5	347	29	9	21	39	1.85
34118196--34118384	81	2.3	81	81	5	213	25	18	19	37	1.94
34118342--34118659	135	2.4	134	94	1	555	29	8	22	39	1.84
34123370--34123433	31	2.1	31	91	2	103	59	12	4	23	1.52
34134783--34134825	18	2.4	18	84	3	61	13	16	41	27	1.86
34135351--34135394	18	2.4	18	82	10	54	38	13	13	34	1.84
34136726--34136770	8	5.6	8	81	7	56	71	2	2	24	1.09
34136726--34136760	15	2.2	16	95	5	63	74	0	2	22	0.95
34137366--34137425	23	2.5	24	86	8	77	73	1	5	20	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34137366--34137429	24	2.6	25	82	9	78	73	1	4	20	1.09
34140253--34140319	29	2.2	30	82	10	75	56	1	0	41	1.08
34148305--34148374	33	2.1	33	100	0	140	32	2	31	32	1.73
34152988--34153057	23	3.0	23	76	15	81	38	20	24	17	1.93
34153039--34153091	22	2.3	23	87	3	72	41	20	20	16	1.90
34153039--34153093	23	2.4	23	87	3	76	41	20	20	18	1.90
34155160--34155199	20	2.0	21	85	14	57	25	20	12	42	1.86
34161846--34162024	27	6.6	27	91	1	259	30	27	14	26	1.95
34161846--34162024	55	3.3	54	88	1	268	30	27	14	26	1.95
34162493--34162529	16	2.3	16	95	0	65	43	0	5	51	1.24
34163863--34163914	18	3.1	17	81	10	61	42	15	7	34	1.75
34164112--34164166	23	2.4	23	76	11	60	36	25	21	16	1.94
34164175--34164218	23	1.9	23	90	0	70	40	20	20	18	1.91
34166022--34166171	55	2.8	54	80	4	149	26	15	29	28	1.96
34165994--34166171	27	6.6	27	77	6	146	25	15	28	30	1.96
34165995--34166150	82	1.9	81	81	6	190	25	16	28	30	1.96
34174024--34174173	55	2.8	54	80	4	149	26	15	29	28	1.96
34173996--34174173	27	6.6	27	77	6	146	25	15	28	30	1.96
34173997--34174152	82	1.9	81	81	6	190	25	16	28	30	1.96
34181926--34182152	111	2.1	110	92	2	375	22	27	25	25	2.00
34181949--34182175	111	2.0	111	86	3	314	23	26	24	25	2.00
34183311--34183398	45	2.0	45	93	0	149	40	21	10	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34196691--34196860	47	3.6	46	81	3	187	34	17	24	24	1.96
34197540--34197582	21	2.0	21	82	8	52	20	16	16	46	1.84
34200037--34200082	3	15.3	3	100	0	92	67	0	0	32	0.91
34214103--34214169	26	2.6	26	81	9	75	29	19	0	50	1.48
34215401--34215496	6	15.8	6	71	18	65	46	15	18	18	1.84
34215410--34215505	31	3.1	31	90	1	140	47	14	19	17	1.82
34215639--34215740	27	3.8	26	83	5	114	38	20	21	19	1.94
34215639--34215741	54	1.9	53	86	2	143	37	20	21	20	1.94
34215898--34215962	22	3.0	22	80	8	78	33	23	23	20	1.97
34216389--34217334	27	35.3	27	88	2	1323	23	22	20	33	1.97
34217327--34217429	27	3.8	27	89	0	116	37	10	24	27	1.88
34217319--34217442	54	2.3	55	76	5	137	35	10	23	30	1.88
34218615--34218661	22	2.2	22	85	11	62	44	17	0	38	1.48
34223986--34224253	40	6.7	40	94	0	464	30	20	26	22	1.98
34231229--34231495	40	6.7	40	92	0	437	29	20	27	22	1.98
34231231--34231497	119	2.2	119	91	0	399	29	20	27	22	1.98
34234844--34235067	40	5.6	39	85	6	265	25	20	28	25	1.99
34234883--34235090	80	2.7	78	83	8	219	26	19	27	25	1.99
34239625--34239661	15	2.5	15	90	0	65	29	18	16	35	1.93
34243617--34243836	48	4.5	49	78	12	238	31	25	17	25	1.97
34243617--34243843	99	2.3	96	83	10	284	30	26	17	25	1.97
34243617--34243850	49	4.8	50	79	9	241	31	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34263512--34263578	10	6.6	10	76	6	64	38	11	19	29	1.88
34263513--34263578	21	3.2	21	85	4	73	39	12	19	28	1.88
34267338--34267484	37	4.0	37	95	0	249	26	31	18	23	1.97
34267692--34267876	47	3.9	47	89	0	271	27	28	10	33	1.90
34267738--34267860	22	5.3	22	63	27	58	26	29	12	32	1.92
34268943--34268968	11	2.4	11	100	0	52	19	30	15	34	1.93
34276526--34276582	28	2.0	29	82	3	71	40	3	24	31	1.72
34276527--34276591	28	2.3	28	81	2	67	41	3	24	30	1.70
34278404--34278528	46	2.7	45	80	12	139	27	19	28	25	1.99
34300263--34300328	28	2.3	28	82	5	71	43	3	22	30	1.68
34301075--34301155	33	2.5	33	89	0	126	27	24	20	27	1.99
34301295--34301358	26	2.4	27	82	5	78	40	21	20	17	1.91
34308804--34308884	33	2.5	33	93	0	135	27	23	20	28	1.99
34309027--34309085	26	2.2	27	82	8	68	38	22	20	18	1.93
34309848--34309921	37	2.0	37	100	0	148	40	32	2	24	1.69
34314352--34314400	24	2.1	22	85	14	64	20	0	18	61	1.35
34314921--34314966	22	2.1	22	88	8	67	39	4	8	47	1.54
34314964--34315020	27	2.1	27	96	0	105	28	8	17	45	1.78
34316058--34316098	13	2.9	14	79	20	50	63	0	17	19	1.31
34317872--34317910	19	2.0	21	85	10	55	38	0	12	48	1.42
34324414--34324457	18	2.4	18	92	0	70	31	43	9	15	1.79
34326303--34326345	20	2.2	20	84	8	54	16	23	39	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34326763--34326820	30	1.9	30	82	6	73	24	31	25	18	1.98
34331267--34331489	119	1.9	120	82	6	283	26	27	21	24	1.99
34331265--34331489	40	5.7	40	83	6	269	26	28	21	24	1.99
34337497--34337555	22	2.7	22	82	10	59	3	25	0	71	1.02
34337538--34337595	26	2.2	26	81	6	64	0	39	0	60	0.97
34340984--34341020	9	4.1	9	85	0	56	29	8	13	48	1.71
34342723--34342773	6	8.8	6	78	8	61	17	5	0	76	0.98
34342714--34342751	18	2.1	18	90	0	58	21	5	0	73	1.02
34342731--34342773	11	3.8	11	96	3	77	16	6	0	76	0.99
34342731--34342773	23	1.9	23	95	4	79	16	6	0	76	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295