genome.fa.s7.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  133  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40687779--40688256	239	2.0	238	89	2	728	29	22	12	35	1.91
40693140--40693251	55	2.1	54	93	1	188	53	1	23	21	1.55
40701343--40701417	22	3.3	23	79	9	82	17	26	18	37	1.93
40701356--40701420	22	3.0	22	83	0	85	16	24	20	38	1.93
40712084--40712149	32	2.1	32	85	0	87	19	33	25	21	1.97
40714471--40714505	4	8.8	4	93	0	61	48	22	2	25	1.64
40714726--40714784	24	2.4	24	76	20	61	54	5	1	38	1.33
40716236--40716324	31	2.9	30	72	8	72	41	7	5	44	1.57
40716545--40716574	3	10.0	3	100	0	60	33	0	0	66	0.92
40719527--40719577	20	2.6	19	71	3	57	52	41	0	5	1.25
40720700--40720754	24	2.3	24	78	15	60	27	5	1	65	1.25
40720794--40720836	22	1.9	23	90	4	70	34	0	6	58	1.25
40720920--40720975	24	2.3	25	82	14	64	30	3	8	57	1.47
40721224--40721269	24	1.9	24	86	0	65	41	8	4	45	1.55
40721398--40721467	37	1.9	35	81	18	81	30	12	0	57	1.36
40721574--40721629	25	2.3	24	79	14	62	37	16	3	42	1.65
40728575--40728607	17	2.0	17	88	5	50	33	15	3	48	1.60
40728893--40729158	46	6.0	46	85	7	343	21	24	15	38	1.92
40729072--40729147	38	2.0	38	100	0	152	23	26	18	31	1.97
40737296--40738576	74	16.8	73	74	12	970	30	16	19	32	1.95
40737633--40738576	74	12.6	73	81	7	1036	31	16	20	31	1.95
40737613--40738576	238	4.3	220	88	7	1312	31	16	19	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40737864--40738576	72	9.6	73	86	4	948	31	16	20	32	1.95
40740649--40740715	27	2.7	23	80	17	64	32	0	7	59	1.25
40740799--40740854	24	2.3	25	82	14	64	30	3	8	57	1.47
40740867--40740917	11	4.5	11	75	20	52	33	9	1	54	1.44
40741280--40741349	37	1.9	35	81	18	81	30	12	0	57	1.36
40741457--40741512	25	2.3	24	79	14	62	37	16	3	42	1.65
40744332--40744546	28	7.7	28	87	1	306	29	28	13	27	1.95
40744532--40744622	40	2.3	40	92	0	155	36	23	15	25	1.94
40745768--40745817	10	5.0	10	81	13	59	68	0	8	24	1.16
40748928--40748968	21	2.0	21	85	0	55	29	17	46	7	1.74
40749415--40749456	6	6.8	6	84	7	50	78	0	4	16	0.91
40749415--40749456	13	3.4	12	81	15	50	78	0	4	16	0.91
40755813--40755862	10	5.0	10	81	13	59	68	2	8	22	1.26
40761801--40761843	21	2.0	21	95	0	77	30	20	9	39	1.84
40765223--40765266	20	2.2	20	84	4	54	77	4	15	2	1.04
40768421--40768489	27	2.5	27	80	2	75	28	7	10	53	1.61
40768423--40768489	28	2.4	27	80	2	80	29	7	8	53	1.59
40769937--40770009	23	3.2	23	88	0	101	19	15	21	43	1.87
40777058--40777115	30	1.9	31	92	3	100	55	13	3	27	1.55
40780279--40780338	29	2.1	29	80	0	66	28	10	16	45	1.80
40787577--40787617	21	2.0	21	90	0	64	24	7	41	26	1.81
40794110--40794152	21	2.1	20	82	4	50	55	4	0	39	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40795895--40795943	26	1.9	25	84	12	64	61	4	0	34	1.15
40798169--40798466	45	6.6	45	80	5	257	22	17	14	44	1.85
40798215--40798458	135	1.8	134	82	6	314	22	16	14	45	1.84
40801236--40801437	73	2.8	73	86	0	260	29	20	16	33	1.95
40805363--40805409	9	5.8	8	80	14	60	14	4	0	80	0.85
40805363--40805407	19	2.4	19	82	10	56	13	4	0	82	0.82
40805373--40805406	15	2.2	16	89	5	52	11	5	0	82	0.83
40805363--40805409	24	2.0	24	87	8	69	14	4	0	80	0.85
40813094--40813244	62	2.4	62	83	6	198	17	30	28	23	1.97
40816433--40816594	21	7.7	21	85	0	180	46	16	19	17	1.84
40816452--40816612	42	3.8	42	86	2	189	47	14	19	17	1.82
40816444--40816612	63	2.7	63	81	2	196	47	15	18	17	1.82
40816436--40816612	21	8.4	21	83	0	165	48	15	19	16	1.81
40818116--40818153	6	6.3	6	100	0	76	15	0	47	36	1.46
40818140--40818215	28	2.7	28	87	4	109	31	0	23	44	1.54
40818281--40818710	126	3.4	126	85	2	596	40	13	17	28	1.88
40818778--40818850	25	2.9	25	77	4	85	53	1	23	21	1.54
40821881--40822008	60	2.2	59	84	7	161	50	8	3	36	1.51
40825600--40825641	21	2.0	20	90	4	66	33	21	21	23	1.97
40832389--40832451	32	2.0	32	93	0	108	31	22	11	34	1.89
40832670--40832737	33	2.1	33	94	0	118	22	10	22	45	1.82
40834579--40834940	41	8.9	41	88	2	455	33	20	24	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40834579--40834932	120	2.9	119	84	3	422	33	20	24	21	1.97
40834982--40835029	22	2.1	22	84	3	60	50	25	0	25	1.50
40835352--40835399	14	3.4	14	80	5	60	25	2	25	47	1.62
40835357--40835399	15	2.9	15	82	3	61	23	2	27	46	1.64
40835424--40835487	21	3.1	21	75	18	62	18	0	45	35	1.50
40835476--40835539	14	4.5	14	80	9	60	21	0	31	46	1.52
40835421--40835540	7	17.0	7	68	14	50	20	0	39	40	1.53
40835689--40835731	22	2.0	22	81	9	52	20	2	30	46	1.63
40836102--40836144	8	5.5	8	91	5	61	72	4	0	23	1.04
40836103--40836144	15	2.7	15	92	3	66	71	4	0	23	1.05
40838823--40838859	17	2.2	17	100	0	74	43	0	13	43	1.44
40838825--40838871	10	4.9	10	82	17	64	46	0	10	42	1.38
40838860--40838889	16	1.9	15	93	6	51	46	3	6	43	1.46
40838825--40838871	17	2.5	20	86	13	64	46	0	10	42	1.38
40841559--40841657	43	2.3	43	89	5	155	22	22	30	25	1.99
40843667--40843692	2	13.0	2	100	0	52	50	0	0	50	1.00
40851898--40851928	15	2.1	14	94	5	53	38	19	6	35	1.77
40853908--40853934	12	2.2	12	100	0	54	51	0	7	40	1.30
40854016--40854086	37	1.9	37	83	11	92	53	4	2	39	1.35
40860220--40860277	30	1.9	30	89	0	89	15	32	32	18	1.93
40863333--40863384	20	2.8	18	78	21	63	51	5	1	40	1.37
40874625--40874802	27	6.6	27	84	3	196	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40874646--40874801	82	1.9	81	88	3	233	29	28	15	26	1.96
40881698--40881829	45	2.9	45	89	2	194	30	26	18	25	1.98
40891055--40891349	148	2.0	148	95	0	527	27	21	17	32	1.96
40892638--40892673	18	2.0	18	100	0	72	16	11	22	50	1.77
40896395--40896419	12	2.1	12	100	0	50	52	0	0	48	1.00
40899025--40899059	18	1.9	19	88	11	56	54	11	28	5	1.59
40900449--40900488	20	2.0	21	90	5	64	42	0	17	40	1.49
40901152--40901269	46	2.5	46	89	5	166	28	21	28	21	1.98
40901189--40901457	143	1.9	145	85	7	379	26	19	29	24	1.98
40901290--40901468	97	1.8	97	84	2	241	25	19	30	24	1.98
40901152--40901466	48	6.6	49	73	9	210	26	20	29	24	1.99
40902834--40902922	39	2.3	39	96	2	160	19	10	23	47	1.79
40904509--40904629	51	2.4	50	82	10	149	53	2	0	42	1.19
40918293--40918352	30	2.0	29	84	9	77	41	3	25	30	1.71
40933644--40933755	42	2.8	40	93	5	197	25	26	23	25	2.00
40947567--40947674	54	2.0	54	88	0	162	21	23	18	37	1.95
40948856--40948881	3	8.7	3	100	0	52	34	30	0	34	1.58
40954380--40954600	49	4.6	49	75	12	215	29	19	27	23	1.98
40954429--40954607	93	1.9	94	85	7	249	27	18	28	25	1.98
40954379--40954648	49	5.7	46	73	13	174	28	19	27	24	1.98
40969862--40969886	5	5.0	5	100	0	50	40	20	40	0	1.52
40982570--40982609	20	2.0	21	90	5	64	30	5	12	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40983348--40983382	17	2.1	17	100	0	70	28	42	0	28	1.56
40983992--40984024	11	2.9	11	95	4	57	0	9	0	90	0.44
40983986--40984026	18	2.4	17	91	4	64	0	7	2	90	0.54
40984814--40984847	18	1.9	18	88	5	52	61	20	0	17	1.34
40986129--40986158	15	2.0	15	100	0	60	33	0	0	66	0.92
40987278--40987326	22	2.2	21	82	10	62	22	0	22	55	1.44
40987309--40987366	8	7.4	8	74	18	50	15	1	29	53	1.52
40987291--40987387	30	3.2	31	77	12	96	18	1	27	52	1.52
40991006--40991034	7	4.3	7	95	4	51	34	27	13	24	1.93
40994057--40994086	15	2.0	15	93	0	51	73	10	6	10	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295