genome.fa.s7.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  167  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52754316--52754348	12	2.6	13	85	9	50	9	45	0	45	1.35
52755416--52755536	28	4.3	28	95	0	206	33	27	8	30	1.86
52755652--52755723	27	2.6	27	86	4	99	26	26	16	30	1.97
52759071--52759236	45	3.7	45	91	0	260	22	24	25	26	2.00
52760179--52760241	29	2.1	30	94	2	110	20	39	25	14	1.90
52787146--52787207	30	2.1	30	84	0	79	27	12	20	38	1.90
52790022--52790136	29	4.0	28	79	8	124	28	28	14	27	1.95
52794985--52795069	29	2.9	28	81	6	98	30	25	15	28	1.96
52794961--52795069	58	1.9	58	82	1	139	29	28	14	27	1.95
52795143--52795176	18	1.9	18	88	5	52	20	38	23	17	1.93
52796348--52796379	16	2.0	16	93	0	55	6	9	37	46	1.61
52801676--52801716	12	3.4	12	93	0	64	19	34	0	46	1.50
52805047--52805176	65	2.0	65	96	0	242	30	26	16	26	1.97
52807415--52807479	15	4.4	15	76	16	64	61	13	15	9	1.56
52807415--52807483	30	2.3	31	80	14	83	59	17	14	8	1.60
52810487--52810676	51	3.8	49	78	9	179	30	26	17	26	1.97
52810498--52810622	50	2.5	50	86	7	166	32	26	15	25	1.95
52817073--52817229	42	3.7	43	78	9	151	27	26	20	25	1.99
52819602--52819626	8	3.1	8	100	0	50	24	0	0	76	0.80
52821901--52821933	17	2.0	17	88	5	50	30	18	12	39	1.87
52822540--52822577	20	1.9	20	88	0	58	31	0	15	52	1.43
52823950--52824004	22	2.5	22	90	0	92	40	10	5	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52830196--52830372	27	6.5	27	83	3	194	29	28	15	25	1.96
52830217--52830372	82	1.9	81	88	3	233	29	28	15	26	1.96
52836427--52836585	39	4.1	38	90	1	228	28	24	20	27	1.99
52836427--52836585	78	2.0	78	91	0	255	28	24	20	27	1.99
52839813--52839850	20	1.9	20	94	0	67	57	2	0	39	1.12
52839824--52839873	24	2.1	24	85	7	66	52	0	0	48	1.00
52841691--52841790	29	3.5	29	82	6	114	32	24	15	29	1.95
52849609--52849709	29	3.5	29	87	1	141	30	28	13	26	1.94
52855021--52855067	20	2.3	20	92	0	76	21	31	29	17	1.96
52869072--52869123	27	2.0	26	84	3	68	17	26	21	34	1.95
52871906--52872025	43	2.8	42	82	2	159	32	14	24	29	1.94
52887009--52887275	39	6.7	39	87	6	321	25	27	21	25	2.00
52901509--52901750	40	6.1	40	84	4	278	25	23	26	24	2.00
52904154--52904338	79	2.3	82	82	7	220	24	27	23	24	2.00
52904135--52904338	40	5.1	40	80	8	220	24	27	23	25	2.00
52911570--52911753	40	4.6	40	82	5	187	25	22	27	23	2.00
52911570--52911788	119	1.8	119	80	5	264	26	21	27	23	1.99
52915662--52915819	29	5.5	29	90	2	221	33	26	11	28	1.91
52916925--52916967	23	1.9	22	86	13	61	4	23	2	69	1.18
52923773--52923902	29	4.5	29	96	0	226	33	25	11	29	1.91
52923773--52923930	58	2.7	58	89	2	203	34	25	11	28	1.91
52925033--52925075	23	1.9	22	86	13	61	4	23	2	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52928455--52928494	18	2.2	19	86	4	55	32	12	7	47	1.69
52929300--52929389	27	3.3	27	88	0	117	37	18	14	28	1.91
52929258--52929389	54	2.4	54	80	1	129	37	18	16	27	1.92
52930999--52931061	28	2.3	27	86	7	92	46	14	7	31	1.73
52936408--52936608	96	2.1	97	94	0	350	24	29	22	23	1.99
52938369--52938554	40	4.6	38	75	10	147	25	15	26	32	1.95
52938419--52938557	41	3.4	42	75	7	115	25	15	27	31	1.95
52938479--52938557	42	1.9	41	86	2	113	26	11	26	35	1.90
52942007--52942034	12	2.3	12	100	0	56	21	10	14	53	1.70
52942034--52942062	10	2.9	10	100	0	58	17	0	10	72	1.11
52947129--52947313	40	4.7	39	76	9	169	27	27	22	23	1.99
52947129--52947313	79	2.3	80	80	10	200	27	27	22	23	1.99
52952024--52952193	40	4.3	40	85	1	207	23	21	30	24	1.99
52952046--52952228	79	2.3	80	80	1	208	25	21	29	24	1.99
52959923--52959999	34	2.2	34	88	6	111	24	19	32	23	1.97
52959905--52959999	34	2.7	33	84	9	109	25	20	30	24	1.98
52978498--52978522	9	2.8	9	100	0	50	32	0	24	44	1.54
52986788--52986823	8	4.2	8	89	10	54	30	0	0	69	0.89
52993875--52994096	40	5.6	40	90	1	340	26	26	23	23	2.00
52999571--52999649	38	2.1	38	97	0	149	30	16	18	34	1.94
53010072--53010185	50	2.3	51	85	3	158	39	14	21	24	1.90
53010176--53010324	31	4.8	31	89	3	210	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53010346--53010513	47	3.6	46	85	3	165	27	14	25	32	1.95
53014794--53014907	50	2.3	51	85	3	158	39	14	21	24	1.90
53014898--53015046	31	4.8	31	87	3	201	28	20	25	26	1.99
53015068--53015235	47	3.6	46	85	3	165	27	14	25	32	1.95
53018236--53018279	21	2.0	23	86	8	65	34	4	18	43	1.70
53019518--53019629	50	2.2	51	91	1	181	37	14	22	25	1.92
53019620--53019799	31	5.8	31	89	1	236	27	19	25	27	1.99
53019620--53019799	93	1.9	93	87	0	261	27	19	25	27	1.99
53019809--53019994	49	3.9	47	80	8	212	26	15	25	32	1.95
53019868--53019995	49	2.6	49	96	0	229	26	15	25	32	1.96
53019809--53019991	96	1.9	99	82	7	232	26	15	25	32	1.96
53032081--53032111	5	6.2	5	92	0	53	25	19	16	38	1.92
53037454--53037619	86	1.9	84	83	10	212	31	25	19	23	1.98
53037456--53037616	43	3.8	42	80	10	175	29	26	20	23	1.99
53040344--53040403	30	2.0	30	90	0	93	28	25	8	38	1.84
53047833--53047894	24	2.8	23	81	11	76	35	3	0	61	1.12
53060258--53060801	44	12.4	44	89	1	768	31	14	25	28	1.95
53074459--53074487	15	1.9	15	100	0	58	34	10	6	48	1.64
53074537--53074568	12	2.7	12	100	0	64	59	9	6	25	1.52
53093451--53093482	6	5.3	6	100	0	64	46	15	18	18	1.84
53105037--53105218	40	4.6	40	86	3	253	26	25	23	24	2.00
53112952--53113173	40	5.6	40	89	1	331	26	26	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53116278--53116502	80	2.8	79	83	3	263	26	28	20	24	1.99
53116280--53116502	40	5.6	40	85	3	236	26	27	21	25	1.99
53116434--53116511	40	1.9	41	82	10	97	26	28	21	23	1.99
53131978--53132029	22	2.4	22	83	9	70	13	26	30	28	1.94
53132442--53132497	26	2.2	26	96	0	103	30	5	26	37	1.79
53136270--53136337	34	2.0	34	91	0	109	19	29	13	38	1.89
53136854--53136886	12	2.8	12	90	4	50	0	24	0	75	0.80
53148608--53148810	43	4.8	43	79	6	198	30	26	18	25	1.98
53148614--53148810	42	4.6	43	80	6	213	29	25	18	25	1.98
53148614--53148844	85	2.8	85	86	5	294	29	25	19	25	1.98
53153796--53154027	49	4.7	49	82	3	284	25	17	26	30	1.97
53153798--53154027	101	2.3	98	85	6	293	25	17	25	30	1.97
53157015--53157189	46	3.8	46	77	6	192	21	20	29	29	1.98
53160129--53160223	15	6.4	15	86	6	131	10	15	13	60	1.60
53165680--53165774	15	6.4	15	86	6	131	10	15	13	60	1.60
53168137--53168319	46	3.8	46	78	12	197	22	20	28	27	1.99
53173807--53173841	15	2.3	15	90	0	52	74	2	22	0	0.95
53173811--53173846	17	2.1	18	89	5	56	69	2	27	0	1.02
53175534--53175581	15	3.4	14	77	11	53	66	4	22	6	1.32
53178105--53178144	3	13.3	3	100	0	80	67	0	0	32	0.91
53178143--53178182	3	13.3	3	100	0	80	32	0	0	67	0.91
53184984--53185136	39	3.9	39	91	0	234	24	32	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53193486--53193631	56	2.6	54	86	6	177	19	19	34	27	1.96
53197625--53197836	40	5.3	41	83	5	274	24	20	27	27	1.99
53197625--53197817	80	2.4	80	95	0	350	24	20	28	26	1.99
53201669--53201783	31	3.7	31	83	5	153	30	28	14	26	1.95
53201807--53201940	42	3.2	42	95	0	241	35	20	14	29	1.93
53202088--53202156	25	2.8	25	86	8	97	24	23	27	24	2.00
53202966--53203030	27	2.4	27	82	5	78	21	24	18	35	1.96
53203084--53203169	27	3.1	27	73	17	77	36	8	15	40	1.77
53203133--53203297	27	6.1	27	77	9	149	29	7	21	40	1.82
53203092--53203217	56	2.3	54	81	8	130	29	6	19	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295