genome.fa.s7.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  121  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36494794--36494839	21	2.1	22	84	4	58	43	2	36	17	1.61
36495006--36495289	115	2.5	115	78	6	299	35	20	15	27	1.93
36495751--36495952	7	27.7	7	65	15	61	20	1	34	42	1.64
36497165--36497248	41	2.0	41	88	4	125	9	22	17	50	1.75
36499428--36499481	25	2.1	25	83	16	67	62	3	7	25	1.38
36499674--36499731	26	2.3	25	85	11	82	63	0	3	32	1.11
36499664--36499783	16	7.2	16	67	20	52	63	0	4	31	1.19
36501847--36501888	19	2.1	21	91	8	70	23	11	9	54	1.66
36503895--36504451	192	2.9	192	87	1	751	23	28	19	29	1.98
36503850--36504465	48	12.9	47	78	6	524	24	28	18	28	1.98
36522097--36522460	48	7.6	48	76	5	317	21	27	21	29	1.99
36522097--36522463	96	3.8	96	83	6	431	22	27	21	29	1.99
36525803--36525848	22	2.1	22	100	0	92	26	21	21	30	1.99
36543069--36543093	5	5.0	5	100	0	50	20	0	0	80	0.72
36544763--36544811	23	2.3	21	83	13	64	14	2	14	69	1.28
36544775--36544812	11	3.4	11	80	20	51	10	2	13	73	1.19
36551956--36551993	18	2.1	18	100	0	76	36	0	39	23	1.55
36554236--36554276	14	2.7	16	81	11	50	53	0	0	46	1.00
36562370--36562493	39	3.2	39	84	0	167	21	20	29	29	1.98
36562370--36562531	39	4.2	39	80	5	132	21	20	29	28	1.98
36562370--36562531	78	2.1	78	81	3	184	21	20	29	28	1.98
36569504--36569611	39	2.8	39	78	0	99	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36578372--36578578	53	3.8	53	75	5	191	37	16	25	20	1.94
36580908--36580988	39	2.0	40	97	2	155	27	32	7	33	1.84
36601316--36601411	42	2.3	42	83	3	122	21	33	20	23	1.97
36607136--36607360	40	5.6	40	85	3	290	23	23	28	25	2.00
36607140--36607360	83	2.7	80	86	5	277	22	23	28	25	1.99
36614898--36614943	14	3.3	14	84	6	58	56	17	6	19	1.62
36626733--36626847	43	2.7	43	78	6	144	33	14	23	28	1.94
36629761--36629797	14	2.5	15	83	16	51	21	40	0	37	1.54
36656030--36656072	22	2.0	22	95	0	77	44	11	4	39	1.62
36659873--36659975	39	2.6	41	79	11	110	26	23	27	23	2.00
36659951--36659998	23	2.1	23	100	0	96	20	29	29	20	1.98
36659975--36660084	40	2.8	41	87	4	154	26	22	26	24	2.00
36659873--36660078	102	2.0	103	81	11	246	25	23	26	24	2.00
36667909--36667950	21	2.0	21	100	0	84	23	23	33	19	1.97
36667930--36668075	40	3.7	40	87	5	176	26	21	27	23	1.99
36667939--36668103	79	2.1	79	81	8	185	27	21	26	24	1.99
36671020--36671159	43	3.3	43	83	0	190	27	29	17	25	1.98
36671019--36671205	43	4.4	41	79	11	137	32	28	16	23	1.96
36672562--36672631	22	3.0	23	79	10	70	40	0	2	57	1.14
36672910--36672948	15	2.6	16	80	12	55	41	0	0	58	0.98
36672976--36673031	19	2.8	20	84	10	71	55	0	1	42	1.10
36689847--36689974	49	2.6	49	83	2	141	24	29	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36689799--36689974	98	1.8	97	81	3	219	26	28	18	26	1.98
36689882--36689977	49	2.0	49	89	0	147	22	27	20	29	1.99
36689995--36690115	46	2.6	48	82	2	147	23	30	16	29	1.96
36696534--36696665	49	2.7	48	83	3	167	21	26	21	29	1.99
36699944--36700244	47	6.4	47	92	0	467	32	8	29	28	1.88
36700363--36700441	37	2.1	37	83	4	97	26	20	29	24	1.99
36702307--36702409	43	2.4	43	100	0	206	22	15	35	26	1.94
36702391--36702464	29	2.6	29	89	4	105	25	16	32	25	1.96
36702856--36702932	40	1.9	40	89	0	118	27	23	25	23	2.00
36706460--36706760	47	6.4	47	92	0	485	32	9	29	28	1.88
36706879--36706957	37	2.1	37	83	4	97	26	20	29	24	1.99
36708709--36708814	53	2.0	53	100	0	212	33	32	13	20	1.91
36716648--36716695	20	2.4	21	75	10	55	43	18	8	29	1.79
36718099--36718239	27	5.2	27	74	11	128	33	21	24	20	1.97
36718099--36718242	54	2.7	54	91	2	227	33	22	24	20	1.97
36719852--36719959	26	4.2	26	89	0	171	36	25	7	31	1.83
36721238--36721278	21	2.0	21	85	0	55	29	0	31	39	1.57
36722542--36722581	20	2.0	20	90	0	62	40	5	15	40	1.68
36722697--36722741	23	2.0	23	86	8	65	57	0	8	33	1.30
36724799--36725077	95	2.9	95	84	2	348	27	19	18	34	1.95
36729024--36729088	28	2.3	28	91	0	103	32	27	7	32	1.85
36729204--36729267	28	2.2	28	86	2	83	25	25	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36729710--36729750	18	2.3	18	86	0	55	24	2	4	68	1.22
36733230--36733401	46	3.7	46	77	13	190	28	27	21	22	1.99
36733235--36733405	93	1.8	93	92	0	288	28	28	21	21	1.99
36733825--36733884	30	2.0	30	90	0	93	30	25	8	36	1.85
36739654--36739714	28	2.2	28	90	0	95	31	27	8	32	1.86
36739820--36739910	28	3.2	28	85	4	121	23	24	20	31	1.98
36740364--36740404	18	2.3	18	86	0	55	24	2	4	68	1.22
36742023--36742072	15	2.9	17	72	21	59	46	0	2	52	1.12
36742204--36742246	19	2.4	19	80	7	54	53	0	0	46	1.00
36742793--36742822	12	2.5	12	100	0	60	43	0	26	30	1.55
36747935--36748160	48	4.7	48	82	0	281	27	18	27	26	1.98
36747923--36748159	96	2.5	96	92	1	377	27	17	27	27	1.98
36753431--36753610	48	3.8	47	73	14	145	27	30	17	25	1.98
36753625--36753792	46	3.6	46	76	6	151	23	27	19	29	1.98
36761131--36761394	46	5.6	46	73	17	170	23	31	18	27	1.97
36763215--36763242	13	2.2	13	100	0	56	21	0	0	78	0.75
36763264--36763320	21	2.6	21	81	13	62	43	0	5	50	1.24
36763316--36763378	21	3.0	21	84	9	76	41	3	0	55	1.16
36763311--36763375	22	3.0	22	82	8	73	40	3	0	56	1.15
36763408--36763464	23	2.6	23	94	5	100	45	0	0	54	0.99
36763409--36763480	14	4.9	15	76	10	60	44	0	1	54	1.08
36763622--36763688	20	3.3	20	77	18	77	56	4	0	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36763660--36763695	16	2.2	17	90	5	56	63	0	0	36	0.94
36763764--36763803	13	3.1	13	85	7	55	57	0	0	42	0.98
36763782--36763825	22	2.0	23	86	4	63	59	0	0	40	0.98
36765273--36765412	43	3.3	43	80	7	176	25	17	29	27	1.98
36765229--36765414	86	2.2	85	87	2	257	23	16	28	31	1.96
36768408--36768550	40	3.6	39	85	8	175	24	27	23	25	2.00
36768408--36768552	39	3.7	40	88	4	190	25	26	22	24	2.00
36768528--36768575	23	2.1	23	100	0	96	20	29	29	20	1.98
36768449--36768653	101	2.0	103	85	9	278	23	27	23	25	2.00
36776404--36776514	40	2.8	40	86	4	154	24	27	22	26	2.00
36776491--36776538	23	2.1	23	100	0	96	20	29	29	20	1.98
36776411--36776616	102	2.0	103	81	11	246	24	26	23	25	2.00
36780403--36780445	22	2.0	22	95	0	77	39	4	11	44	1.62
36789690--36789740	19	2.6	19	81	3	66	27	3	1	66	1.20
36791180--36791243	26	2.5	26	79	18	73	18	9	3	68	1.30
36795728--36795912	40	4.6	40	95	1	318	26	27	23	22	2.00
36798048--36798090	22	2.0	22	95	0	77	39	4	11	44	1.62
36798065--36798125	30	2.0	30	100	0	122	42	3	18	36	1.66
36798772--36798885	59	1.9	60	84	8	153	50	18	2	28	1.61
36802928--36803073	68	2.2	64	82	10	170	26	28	15	28	1.96
36803538--36803598	30	2.0	30	83	0	77	31	22	8	37	1.84
36807444--36807473	11	2.7	11	100	0	60	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36808697--36808878	99	1.9	95	83	10	233	28	19	30	21	1.98
36812139--36812621	70	6.9	69	77	4	412	32	24	16	25	1.96
36812139--36812683	140	3.9	141	81	3	559	32	23	17	26	1.96
36818564--36818607	19	2.2	20	88	4	63	40	11	22	25	1.87
36819584--36819612	14	2.1	14	100	0	58	20	6	20	51	1.70
36828761--36828931	93	1.8	93	89	2	272	30	29	19	20	1.97
36828753--36828928	46	3.8	46	75	15	182	31	29	18	20	1.97
36831164--36831201	18	2.1	18	100	0	76	65	10	5	18	1.41
36833502--36833645	51	2.9	49	85	2	189	25	20	25	29	1.99
36836430--36836474	15	2.9	15	86	3	63	17	15	13	53	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295