genome.fa.s7.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  119  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35753104--35753138	14	2.5	14	90	0	52	31	8	31	28	1.87
35755302--35755354	20	2.7	19	91	8	88	50	3	7	37	1.49
35762941--35762982	22	1.9	22	95	0	75	40	14	9	35	1.78
35764460--35764677	40	5.5	40	89	1	296	22	22	28	25	1.99
35770706--35770826	46	2.6	48	89	5	176	23	28	19	27	1.99
35781777--35781915	38	3.5	38	74	11	134	40	14	0	44	1.50
35785087--35785146	21	2.9	21	78	9	61	71	3	5	20	1.19
35785074--35785136	28	2.2	28	97	0	117	73	1	6	19	1.13
35785111--35785155	19	2.4	18	85	3	54	71	2	2	24	1.09
35789679--35789742	27	2.2	29	76	15	71	39	1	4	54	1.31
35789714--35789760	23	2.0	24	87	4	69	34	2	4	59	1.29
35790452--35790478	12	2.2	12	100	0	54	48	0	7	44	1.31
35793181--35793226	22	2.1	21	84	4	56	60	2	0	36	1.09
35793505--35793530	7	3.7	7	100	0	52	38	0	0	61	0.96
35793503--35793537	14	2.5	14	80	0	52	31	0	0	68	0.90
35797667--35797696	9	3.3	9	90	0	51	46	13	10	30	1.75
35810248--35810282	17	2.0	18	88	5	54	60	11	0	28	1.32
35810403--35810513	43	2.6	43	86	1	143	23	35	24	17	1.95
35811717--35811875	41	3.9	40	76	14	139	31	27	14	26	1.95
35811742--35811874	40	3.3	40	79	7	128	31	27	15	25	1.95
35821066--35821241	46	3.8	46	76	16	175	22	20	28	28	1.98
35821062--35821233	93	1.8	93	91	2	283	22	20	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35823151--35823219	15	4.6	15	83	0	84	11	17	13	57	1.64
35823142--35823229	30	3.0	30	81	8	99	10	17	15	56	1.66
35825616--35825791	46	3.8	46	77	15	191	21	21	27	29	1.98
35825612--35825782	93	1.8	93	92	0	288	21	21	28	28	1.98
35828745--35828813	15	4.6	15	83	0	84	11	17	13	57	1.64
35828736--35828823	30	3.0	30	81	8	99	10	17	15	56	1.66
35831210--35831385	46	3.8	46	77	15	182	21	21	28	28	1.98
35831206--35831377	93	1.8	93	92	0	290	20	22	29	27	1.99
35853797--35853823	14	1.9	14	100	0	54	55	7	14	22	1.64
35869318--35869408	31	3.0	30	77	4	94	42	15	10	30	1.81
35871182--35871253	20	3.6	21	70	7	60	20	29	13	36	1.92
35871000--35871276	79	3.5	78	83	3	331	17	28	18	36	1.93
35871000--35871259	40	6.6	39	85	2	322	17	27	18	36	1.93
35871811--35871882	20	3.6	19	71	15	65	13	29	19	37	1.90
35875500--35875763	40	6.6	40	87	5	374	28	26	21	23	1.99
35875500--35875763	122	2.2	120	88	6	392	28	26	21	23	1.99
35877643--35877700	29	2.0	29	96	0	107	46	3	0	50	1.18
35888521--35888587	21	3.2	21	64	16	57	25	8	13	52	1.69
35888515--35888601	42	2.1	42	100	0	174	26	9	11	52	1.67
35888758--35888789	16	2.0	16	100	0	64	18	12	31	37	1.88
35890003--35890059	30	1.9	30	96	0	105	21	36	24	17	1.94
35892525--35892577	20	2.6	20	96	3	97	15	15	13	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35894993--35895110	45	2.7	43	78	6	148	27	16	27	27	1.97
35895407--35895577	38	4.5	38	84	4	211	22	21	24	31	1.98
35895407--35895577	76	2.2	76	88	2	245	22	21	24	31	1.98
35895570--35895699	45	2.9	45	89	2	199	21	22	28	27	1.99
35907453--35907568	56	2.1	57	95	1	207	37	10	6	44	1.65
35907928--35907981	20	2.7	21	77	8	58	20	9	0	70	1.14
35907933--35907992	25	2.4	24	73	13	59	23	6	0	70	1.11
35907974--35908004	15	2.1	15	93	0	53	32	3	0	64	1.09
35908990--35909044	27	2.0	27	100	0	110	43	10	25	20	1.84
35932744--35932817	31	2.4	31	97	0	139	20	29	28	21	1.98
35942567--35942632	33	2.0	33	100	0	132	45	15	18	21	1.85
35945202--35945321	56	2.1	56	98	0	231	45	9	23	22	1.81
35946451--35946555	40	2.6	41	79	8	117	23	22	27	25	2.00
35959324--35959812	47	10.4	47	92	0	798	31	8	30	29	1.88
35959931--35960009	37	2.1	37	88	4	115	25	18	30	25	1.98
35965576--35965610	11	3.1	12	92	8	56	68	8	22	0	1.16
35965576--35965619	21	2.0	23	82	8	56	63	11	22	2	1.38
35970780--35970965	40	4.7	40	88	5	243	26	27	22	24	2.00
35975189--35975254	5	12.8	5	84	15	82	18	3	0	78	0.87
35975175--35975254	32	2.4	34	88	12	114	18	3	0	77	0.92
35975176--35975254	39	2.1	37	83	9	97	18	3	0	77	0.92
35986588--35986737	46	3.2	46	72	10	142	22	29	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35990086--35990255	49	3.6	48	73	9	161	27	19	27	25	1.99
35991534--35991575	22	2.0	22	85	4	59	11	42	26	19	1.85
35998434--35998463	12	2.5	12	100	0	60	6	10	43	40	1.64
35999451--35999504	26	2.0	27	82	3	65	22	1	18	57	1.50
36006338--36006603	40	6.7	40	87	3	308	25	20	26	26	1.99
36014384--36014608	40	5.7	40	87	4	271	25	20	26	27	1.99
36014391--36014641	40	6.3	39	83	5	247	27	19	25	27	1.99
36026567--36026778	40	5.3	40	77	5	232	24	20	27	27	1.99
36026571--36026787	80	2.7	79	87	3	292	23	20	28	27	1.99
36030686--36030864	49	3.7	50	80	9	165	25	29	18	26	1.98
36030687--36031007	96	3.4	95	81	11	315	24	30	18	26	1.98
36030687--36031049	46	7.7	47	76	11	250	24	29	18	27	1.98
36030684--36031052	94	3.9	95	77	11	323	24	29	18	27	1.98
36030684--36031050	140	2.6	140	77	10	370	25	29	18	27	1.98
36033430--36033469	20	2.0	20	85	0	53	35	12	25	27	1.92
36038551--36038832	138	2.0	138	90	0	447	23	22	30	23	1.99
36040792--36040872	29	2.8	29	81	10	78	27	13	22	37	1.91
36044631--36044763	40	3.3	40	94	2	223	27	28	21	22	1.99
36044631--36044814	80	2.3	81	83	5	223	27	27	21	23	1.99
36044631--36044814	40	4.6	40	87	4	183	27	27	21	23	1.99
36052672--36052857	40	4.7	40	85	5	216	26	27	22	23	1.99
36057775--36057809	18	1.9	18	88	11	54	62	14	2	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36061026--36061064	18	2.1	19	90	4	62	33	2	33	30	1.72
36080597--36080728	43	3.1	43	92	0	228	43	19	21	15	1.87
36088224--36088366	55	2.6	55	82	6	173	16	24	29	29	1.97
36103462--36103503	21	2.0	21	100	0	84	19	14	19	47	1.82
36105840--36106000	20	8.3	19	66	20	84	37	2	1	58	1.22
36105840--36106000	9	16.7	9	68	23	71	37	2	1	58	1.22
36108297--36108366	22	3.2	22	79	4	79	18	28	15	37	1.92
36108292--36108386	44	2.2	41	81	9	102	18	27	17	35	1.94
36108330--36108408	41	1.9	41	84	5	106	22	30	17	29	1.97
36112755--36113013	108	2.4	108	85	3	389	38	5	10	46	1.61
36113319--36113370	27	1.9	27	88	0	77	15	30	28	25	1.96
36116845--36116882	11	3.5	11	85	10	51	18	28	0	52	1.45
36117177--36117208	15	2.1	15	100	0	64	37	25	6	31	1.81
36121091--36121144	25	2.3	24	79	17	60	44	1	16	37	1.59
36121522--36121562	22	1.9	21	85	5	55	70	7	19	2	1.22
36122217--36122252	3	12.0	3	93	0	63	33	0	2	63	1.08
36122220--36122258	9	4.4	9	93	3	53	33	0	5	61	1.18
36122554--36122671	51	2.2	54	86	4	161	16	17	22	42	1.89
36128635--36128663	3	9.7	3	100	0	58	0	34	0	65	0.93
36135242--36135293	14	3.8	14	72	12	54	50	28	0	21	1.49
36139361--36139440	37	2.2	37	84	8	101	25	30	17	27	1.97
36139558--36139999	47	9.4	47	93	0	731	28	30	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36146291--36146337	19	2.3	20	82	10	60	36	0	14	48	1.44
36146721--36146780	27	2.2	27	93	0	102	26	13	30	30	1.94
36147448--36147803	180	2.0	179	85	3	475	40	7	18	32	1.80
36149927--36150288	47	7.7	48	74	15	253	27	20	29	22	1.98
36149930--36150288	94	3.8	93	80	12	414	27	20	29	22	1.98
36149927--36150288	141	2.6	139	79	8	351	27	20	29	22	1.98
36177998--36178028	11	2.8	11	100	0	62	22	0	29	48	1.51
36183046--36183070	13	1.9	13	100	0	50	40	28	32	0	1.57
36185375--36185436	26	2.4	25	81	2	79	19	25	20	33	1.96
36185414--36185461	23	2.1	23	84	0	60	16	27	22	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295