genome.fa.s7.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  158  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49697408--49697630	40	5.6	39	82	5	207	27	27	20	24	1.99
49697406--49697630	80	2.8	79	82	6	231	28	28	20	24	1.99
49697408--49697630	120	1.9	119	82	4	279	27	27	20	24	1.99
49704905--49705127	40	5.6	39	82	5	216	27	27	20	24	1.99
49704903--49705127	80	2.8	79	82	6	240	27	28	20	24	1.99
49704905--49705127	120	1.9	119	83	4	288	27	27	20	24	1.99
49715250--49715414	43	3.9	42	81	8	163	24	16	26	33	1.96
49717061--49717113	26	2.0	26	88	0	79	69	0	24	5	1.09
49717076--49717113	19	2.0	20	85	10	53	71	0	23	5	1.07
49717112--49717291	89	2.0	89	95	0	324	27	15	17	38	1.90
49723407--49723629	40	5.6	39	80	7	189	24	21	27	26	1.99
49723487--49723664	79	2.2	80	80	2	189	24	21	28	25	1.99
49726343--49726374	5	6.2	5	96	3	55	78	0	18	3	0.89
49736246--49736513	49	5.6	49	73	16	190	23	28	21	26	1.99
49739391--49739464	38	1.9	38	97	0	139	25	13	9	51	1.71
49741823--49741865	16	2.7	16	88	0	59	53	18	18	9	1.70
49742077--49742164	29	3.1	28	88	4	140	27	14	27	30	1.95
49745557--49745599	22	2.0	22	90	0	68	44	13	4	37	1.65
49746151--49746189	20	2.0	20	90	5	62	25	10	20	43	1.83
49748985--49749159	27	6.5	27	82	3	183	26	15	28	29	1.96
49748985--49749138	82	1.9	80	88	4	229	26	15	28	29	1.96
49748981--49749159	81	2.2	81	83	3	227	26	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49749558--49749735	27	6.6	27	84	3	205	29	28	15	26	1.96
49749579--49749734	82	1.9	81	88	3	233	29	28	15	26	1.96
49752575--49752613	20	2.0	20	90	5	62	43	20	10	25	1.83
49753164--49753206	22	2.0	22	90	0	68	37	4	13	44	1.65
49756565--49756683	58	2.1	57	82	3	141	31	28	12	27	1.93
49756596--49756683	29	3.1	29	88	1	142	30	27	14	27	1.95
49756895--49756937	16	2.7	16	88	0	59	9	18	18	53	1.70
49759292--49759365	38	1.9	38	97	0	139	51	9	13	25	1.71
49762144--49762499	49	7.5	49	72	13	187	28	20	28	23	1.99
49762284--49762505	98	2.3	93	80	8	234	26	20	28	24	1.99
49762181--49762505	49	6.9	48	74	13	210	27	20	28	23	1.99
49778021--49778098	26	3.0	26	61	17	63	28	25	26	19	1.99
49777968--49778098	50	2.6	51	90	4	203	26	26	28	18	1.98
49786554--49786589	17	2.1	17	89	0	54	83	0	13	2	0.76
49796867--49796906	21	1.9	21	85	10	55	25	25	25	25	2.00
49805895--49806068	47	3.7	46	74	15	153	31	27	17	23	1.97
49814666--49814793	39	3.3	39	85	0	175	32	21	25	21	1.98
49814665--49814819	78	2.0	76	82	5	186	30	21	26	21	1.98
49822569--49822696	39	3.3	39	87	0	184	32	18	25	23	1.97
49825942--49825974	15	2.1	16	88	5	50	6	24	0	69	1.10
49826386--49826428	20	2.1	20	83	12	52	41	0	4	53	1.21
49826551--49826580	8	3.6	8	91	8	51	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49826550--49826579	9	3.4	9	90	9	53	30	0	0	70	0.88
49826660--49826731	30	2.4	31	77	13	78	34	2	2	59	1.26
49826716--49826772	28	2.0	28	80	12	64	21	7	3	68	1.29
49826947--49826987	22	1.9	21	90	5	64	24	4	4	65	1.32
49827079--49827118	15	2.6	16	80	11	57	67	0	0	32	0.91
49831118--49831208	44	2.0	45	97	2	175	28	8	28	34	1.87
49831255--49831307	24	2.2	24	90	6	81	41	0	0	58	0.98
49835011--49835069	29	2.0	29	100	0	118	30	16	13	38	1.88
49837466--49837533	31	2.2	31	86	5	93	44	7	13	35	1.71
49841396--49841439	5	8.8	5	85	9	63	59	0	2	38	1.10
49842147--49842346	109	1.8	109	94	2	357	35	9	7	48	1.63
49856214--49856252	21	1.9	20	89	5	60	46	20	0	33	1.51
49859503--49859573	34	2.1	34	86	0	97	21	26	23	28	1.99
49863490--49863754	39	6.8	39	95	0	467	22	29	26	22	1.99
49874421--49874489	21	3.2	21	63	25	54	26	27	14	31	1.95
49874418--49874502	43	2.0	43	95	0	152	25	29	12	31	1.93
49875006--49875066	30	2.0	30	83	0	77	31	22	8	37	1.84
49886144--49886182	21	1.9	20	89	5	60	46	20	0	33	1.51
49900740--49900811	29	2.5	28	82	8	92	29	33	13	23	1.93
49905249--49905526	50	5.6	49	80	5	301	23	28	20	27	1.99
49905244--49905527	100	2.9	101	84	5	348	23	28	20	27	1.99
49918206--49918408	40	5.1	40	83	5	234	25	28	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49924601--49924767	27	6.2	27	81	4	176	17	23	22	36	1.94
49924601--49924767	54	3.1	54	89	1	246	17	23	22	36	1.94
49924605--49924765	81	2.0	81	85	7	220	18	24	21	36	1.95
49925999--49926131	69	1.9	70	87	1	196	33	13	16	36	1.88
49926890--49927278	39	9.9	39	79	5	343	22	21	26	29	1.99
49926906--49927206	40	7.6	40	84	2	295	22	21	26	28	1.99
49926911--49927314	79	5.1	77	76	6	310	22	21	26	30	1.99
49926912--49927303	158	2.5	157	81	2	437	22	21	26	29	1.99
49926912--49927239	119	2.8	117	80	5	379	22	20	27	29	1.98
49935381--49935925	47	11.6	47	93	0	883	33	8	29	29	1.86
49937876--49937956	42	1.9	42	80	9	94	20	33	25	19	1.97
49939631--49939675	20	2.2	20	88	0	63	35	13	2	48	1.54
49944276--49944377	40	2.5	40	76	3	98	34	23	17	24	1.96
49949141--49949457	46	6.7	47	71	12	202	21	29	19	29	1.98
49951058--49951154	37	2.6	37	83	3	106	24	20	27	26	1.99
49951116--49951342	48	4.7	48	90	0	346	24	19	26	29	1.99
49952906--49953379	40	11.9	40	92	0	779	24	27	19	28	1.99
49959179--49959643	40	11.6	40	92	0	752	24	28	19	27	1.99
49962884--49963138	55	4.8	53	81	9	245	20	24	18	36	1.95
49962931--49963131	108	1.8	110	90	4	327	22	24	18	34	1.96
49972417--49972589	45	3.9	45	91	3	271	28	28	20	23	1.99
49980843--49981027	79	2.3	81	83	7	227	24	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49980844--49981027	40	4.6	40	82	9	207	25	22	27	24	2.00
49980896--49981060	79	2.1	79	83	6	201	26	21	27	24	1.99
49984181--49984276	40	2.4	40	87	3	131	34	22	16	26	1.95
49984357--49984398	20	2.1	20	100	0	84	40	14	4	40	1.67
50003195--50003369	46	3.8	46	89	1	244	33	28	18	20	1.96
50007365--50007401	17	2.2	17	90	9	58	78	0	5	16	0.93
50007365--50007405	6	7.0	6	83	10	50	78	0	4	17	0.93
50011594--50011861	40	6.7	40	94	0	464	30	20	26	22	1.98
50017793--50018060	40	6.7	40	94	0	464	30	20	26	22	1.98
50023517--50023741	40	5.7	40	84	4	240	24	20	28	27	1.99
50023570--50023739	40	4.3	40	91	0	243	23	21	28	27	1.99
50023592--50023774	79	2.3	80	83	1	235	25	20	27	26	1.99
50031399--50031621	40	5.6	40	86	3	245	24	21	27	26	1.99
50031474--50031656	79	2.3	80	83	1	235	25	20	27	26	1.99
50038079--50038127	26	1.9	25	83	4	62	46	12	4	36	1.60
50040733--50040917	40	4.7	40	81	7	200	24	22	27	25	2.00
50040786--50040940	79	2.0	79	84	7	208	25	21	27	25	1.99
50053780--50053847	33	2.1	33	94	0	118	36	22	14	26	1.93
50055929--50055968	20	2.0	20	90	0	62	25	27	32	15	1.95
50055973--50056024	21	2.5	21	100	0	104	17	25	42	15	1.88
50060600--50060634	16	2.1	17	89	5	54	45	0	11	42	1.40
50062313--50062481	20	8.6	20	71	10	73	40	6	10	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50062277--50062385	20	5.6	19	72	7	67	38	7	14	39	1.74
50062277--50062385	39	2.8	39	81	4	132	38	7	14	39	1.74
50066910--50066965	21	2.7	21	88	0	76	46	19	23	10	1.81
50067515--50067547	16	1.9	18	88	11	52	51	6	0	42	1.26
50068890--50068957	9	7.6	9	86	6	102	47	19	8	25	1.78
50069042--50069066	13	1.9	13	100	0	50	12	0	48	40	1.40
50069170--50069204	18	1.9	18	94	0	61	20	14	17	48	1.81
50070410--50070451	8	5.5	8	80	8	52	52	0	0	47	1.00
50070410--50070467	15	3.9	15	82	10	59	46	1	0	51	1.11
50075246--50075304	22	2.6	23	79	12	68	74	3	3	18	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295