genome.fa.s7.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  106  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31643914--31643983	29	2.4	29	92	2	115	22	15	27	34	1.95
31644027--31644099	22	3.4	22	73	3	67	38	12	16	32	1.86
31644045--31644173	68	1.9	66	85	3	177	34	11	17	35	1.87
31644115--31644187	22	3.3	22	78	1	65	32	13	20	32	1.92
31644364--31644424	27	2.3	27	91	5	97	21	24	31	22	1.98
31644437--31644471	18	1.9	18	88	0	52	20	17	31	31	1.95
31646348--31646378	16	1.9	16	93	0	53	29	0	16	54	1.42
31646980--31647052	33	2.2	33	80	0	83	30	15	26	28	1.96
31646925--31647122	103	1.9	102	88	0	288	34	16	24	24	1.95
31646941--31647175	103	2.3	102	79	7	239	34	17	23	23	1.96
31648273--31648337	29	2.2	29	83	0	76	38	18	7	35	1.80
31650043--31650084	9	4.6	9	82	5	57	33	2	21	42	1.66
31653368--31653453	41	2.1	41	93	0	145	36	26	15	22	1.93
31664134--31664167	15	2.1	17	89	10	54	17	5	2	73	1.16
31671094--31671143	23	2.2	23	96	0	91	38	8	20	34	1.82
31671730--31671763	7	4.9	7	100	0	68	58	0	14	26	1.36
31672489--31672530	15	2.9	15	80	16	52	45	2	21	30	1.65
31685417--31685462	23	2.0	23	84	12	60	45	10	6	36	1.65
31685424--31685468	23	2.0	23	82	8	56	40	13	8	37	1.76
31686922--31686993	35	2.1	35	100	0	144	47	11	5	36	1.63
31720130--31720168	20	2.0	20	85	10	53	33	0	35	30	1.58
31724921--31724958	15	2.5	15	100	0	76	21	23	36	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31725295--31725329	11	3.3	11	88	4	54	68	22	0	8	1.16
31727434--31727511	39	2.0	39	94	0	138	16	32	14	37	1.89
31727836--31727869	15	2.3	15	100	0	68	55	11	0	32	1.36
31738056--31738096	20	2.0	20	85	4	55	51	12	29	7	1.66
31749159--31749310	24	6.0	24	82	11	187	39	17	21	22	1.92
31749148--31749322	52	3.4	52	93	1	271	37	16	22	23	1.93
31749346--31749595	51	4.9	51	93	1	385	32	14	25	28	1.94
31761423--31761452	14	2.1	14	93	0	51	16	0	36	46	1.47
31770337--31770456	57	2.1	58	83	10	158	28	15	5	50	1.66
31771311--31771350	21	1.9	21	89	0	62	27	5	7	60	1.45
31777515--31777583	29	2.4	29	83	7	97	21	14	15	47	1.81
31777941--31777982	21	2.0	21	90	0	66	45	9	35	9	1.69
31781707--31781753	24	2.0	24	84	16	62	51	17	0	31	1.46
31784525--31784834	49	6.4	49	92	3	533	29	29	8	33	1.87
31784525--31784834	96	3.2	96	95	2	543	29	29	8	33	1.87
31784525--31784834	145	2.2	145	98	1	597	29	29	8	33	1.87
31784839--31784920	27	3.1	27	76	16	109	23	20	1	54	1.51
31784832--31784902	24	2.8	24	76	16	81	21	23	2	52	1.60
31786608--31786950	40	8.6	40	90	0	506	25	28	21	23	1.99
31787514--31788030	49	10.8	49	92	3	856	29	28	7	33	1.85
31787514--31788030	96	5.4	96	94	1	867	29	28	7	33	1.85
31787514--31788030	145	3.6	145	96	1	952	29	28	7	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31791008--31791193	40	4.7	40	88	5	252	24	22	27	26	2.00
31791061--31791226	80	2.1	79	86	5	228	25	20	27	26	1.99
31798885--31799067	40	4.7	37	83	8	161	24	22	27	25	2.00
31798885--31799067	77	2.3	81	82	7	225	24	22	27	25	2.00
31798938--31799100	79	2.1	76	81	6	184	26	20	26	26	1.99
31832367--31832455	41	2.1	43	80	12	105	48	0	2	49	1.13
31832437--31832490	24	2.2	24	80	6	65	53	1	0	44	1.11
31840265--31840306	13	3.5	13	81	18	54	38	50	2	9	1.48
31840395--31840436	9	4.7	9	77	11	50	30	7	16	45	1.74
31856152--31856273	22	5.3	22	62	21	61	25	29	11	33	1.91
31856124--31856380	47	5.4	47	89	3	365	26	29	9	34	1.88
31861784--31861839	28	2.0	28	96	0	103	21	25	8	44	1.81
31868903--31868932	2	14.5	2	93	6	51	50	3	0	46	1.18
31869098--31869168	34	2.1	35	84	5	92	47	4	1	46	1.30
31869136--31869210	30	2.4	31	80	10	82	50	4	0	45	1.20
31869375--31869475	31	3.3	31	75	12	82	40	16	31	10	1.83
31871456--31871516	30	2.0	30	93	0	104	37	9	18	34	1.83
31873337--31873414	38	2.1	38	95	4	140	57	7	5	29	1.48
31878961--31879118	42	3.7	43	76	11	155	24	18	27	29	1.98
31881971--31882113	73	2.0	73	91	0	232	33	17	23	25	1.96
31885197--31885249	17	3.0	17	83	10	54	28	0	3	67	1.07
31886200--31886235	16	2.2	17	95	5	65	22	30	0	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31886230--31886283	11	4.9	11	81	6	56	25	29	1	42	1.66
31886230--31886283	22	2.5	21	78	6	63	25	29	1	42	1.66
31886318--31886346	14	2.1	14	93	6	51	41	3	0	55	1.17
31887438--31887463	7	3.7	7	100	0	52	26	0	15	57	1.38
31887966--31888052	30	2.9	31	75	5	97	34	39	11	14	1.83
31888577--31888696	54	2.2	54	83	5	145	41	2	9	46	1.49
31891722--31892100	126	3.0	126	93	0	641	29	18	15	36	1.92
31891933--31891979	14	3.3	15	73	11	53	36	19	6	38	1.77
31892061--31892124	28	2.3	28	86	0	83	26	15	6	51	1.67
31893678--31893754	39	2.0	39	100	0	154	28	15	19	36	1.92
31895595--31895652	2	29.0	2	96	0	107	51	48	0	0	1.00
31896621--31896657	5	7.4	5	100	0	74	0	0	37	62	0.96
31898003--31898081	39	2.0	39	97	0	149	34	5	10	50	1.58
31903061--31903101	20	2.0	20	95	0	73	41	7	9	41	1.66
31904912--31904956	24	1.9	24	90	4	74	0	44	2	53	1.13
31906267--31906301	15	2.3	15	85	0	52	31	2	2	62	1.24
31906388--31906428	21	2.0	21	95	0	73	39	34	4	21	1.75
31906825--31906987	7	23.0	7	77	2	119	47	31	0	20	1.50
31907340--31907550	40	5.3	40	82	5	257	25	20	22	31	1.98
31908125--31908242	57	2.1	58	84	7	152	42	6	20	30	1.78
31914255--31914426	93	1.8	93	93	0	299	27	30	20	20	1.98
31914248--31914423	46	3.8	46	77	12	189	28	30	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31929992--31930029	7	5.4	7	100	0	76	42	28	0	28	1.56
31930152--31930242	45	2.0	45	93	0	155	36	24	14	25	1.93
31930171--31930246	21	3.5	21	66	16	55	36	25	14	23	1.93
31934675--31934731	9	5.8	10	74	17	57	36	10	19	33	1.86
31934685--31934752	20	3.4	20	91	4	102	35	10	22	32	1.88
31934801--31934936	52	2.7	50	88	5	195	26	22	24	27	2.00
31934801--31934923	26	4.8	26	87	1	169	24	23	24	27	2.00
31940236--31940421	40	4.7	40	87	5	234	24	21	27	26	1.99
31940289--31940454	80	2.1	79	85	5	219	25	19	27	27	1.99
31945906--31945962	9	5.8	10	76	15	57	36	8	19	35	1.83
31945905--31945979	20	3.8	20	91	6	111	37	9	18	34	1.83
31945924--31945979	11	5.5	11	71	16	57	37	10	19	32	1.86
31946030--31946088	26	2.3	26	93	0	100	28	22	25	23	1.99
31946151--31946285	25	5.3	26	85	5	181	27	21	23	27	1.99
31945975--31946209	122	1.9	121	97	0	443	29	13	28	28	1.94
31946151--31946285	51	2.7	51	90	6	215	27	21	23	27	1.99
31954956--31954997	20	2.1	20	100	0	84	35	19	4	40	1.72
31957719--31957896	27	6.6	27	83	3	196	26	15	28	29	1.96
31957720--31957875	82	1.9	81	86	3	224	26	16	28	28	1.97
31957716--31957896	82	2.2	81	82	2	220	27	16	27	29	1.97
31962881--31962944	31	2.1	31	93	0	110	23	23	15	37	1.93
31963138--31963258	24	5.0	24	90	7	183	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31963129--31963258	49	2.6	48	86	9	183	27	22	19	30	1.98
31963307--31963373	20	3.3	20	85	0	89	35	22	8	32	1.85
31968362--31968434	36	2.0	36	97	0	137	34	10	20	34	1.88
31970853--31970908	15	3.5	16	81	13	62	82	7	1	8	0.92
31970853--31970917	33	2.0	33	85	11	89	80	7	1	10	0.98
31970853--31970916	17	3.8	17	78	17	62	81	7	1	9	0.94
31970857--31970916	11	5.4	10	76	21	50	81	6	1	10	0.93
31970854--31970917	16	4.0	15	77	15	58	81	6	1	10	0.94
31974743--31974798	17	2.8	22	66	25	59	44	17	3	33	1.66
31976501--31976579	22	3.6	22	84	0	104	15	24	17	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295