genome.fa.s7.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  193  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61556721--61556773	18	2.8	19	77	8	54	24	9	5	60	1.49
61560856--61560983	49	2.6	49	82	2	168	24	28	19	28	1.99
61560810--61561072	93	2.8	94	82	9	279	24	27	19	28	1.98
61561736--61561775	20	2.0	21	85	5	55	37	20	0	42	1.52
61564568--61564642	38	2.0	38	89	0	114	21	24	26	28	1.99
61564619--61564807	43	4.4	43	87	1	265	13	22	33	29	1.93
61578537--61578644	53	2.0	53	94	0	189	28	30	17	23	1.97
61578547--61578642	28	3.6	27	69	13	81	30	29	17	22	1.97
61578544--61578667	53	2.3	53	88	2	178	29	30	16	24	1.96
61578626--61578680	25	2.2	25	87	6	76	25	32	12	29	1.93
61578811--61578941	43	3.0	43	86	0	181	35	31	22	11	1.89
61578930--61579050	40	3.0	40	92	0	179	27	31	21	19	1.98
61585239--61585297	10	5.7	10	80	6	55	37	18	10	33	1.85
61585247--61585309	10	6.0	11	75	15	53	31	20	12	34	1.90
61585239--61585297	31	1.9	31	92	0	100	37	18	10	33	1.85
61587530--61587583	27	2.0	27	92	0	90	22	18	29	29	1.97
61589518--61589953	47	9.3	47	91	0	710	27	29	8	33	1.87
61592163--61592335	46	3.7	46	78	13	201	30	28	19	21	1.98
61592168--61592337	93	1.8	93	94	0	304	29	28	19	22	1.98
61605421--61605507	27	3.2	27	95	0	147	26	17	19	36	1.94
61605418--61605534	54	2.2	53	81	6	137	26	14	20	38	1.91
61605492--61605586	27	3.7	26	77	11	88	26	6	22	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61606482--61606557	23	3.3	23	78	14	86	27	23	15	32	1.95
61606457--61606534	22	3.4	23	73	19	65	23	23	19	34	1.96
61606457--61606563	45	2.3	45	83	13	130	26	22	15	35	1.94
61606732--61606823	20	4.7	19	71	11	69	35	8	18	36	1.82
61609311--61609371	6	9.3	6	75	19	52	77	1	18	3	0.99
61609311--61609371	19	3.4	18	72	19	56	77	1	18	3	0.99
61609311--61609392	27	3.1	27	84	5	96	71	2	20	4	1.16
61615536--61615579	23	1.9	23	86	9	63	72	2	18	6	1.17
61615736--61615811	38	2.0	38	94	0	134	30	14	10	44	1.79
61617685--61617797	35	3.2	37	69	19	121	21	7	30	39	1.82
61617685--61617826	70	2.0	70	98	0	275	21	7	28	42	1.79
61626528--61626726	27	7.4	27	85	2	220	29	21	7	42	1.79
61626729--61626907	54	3.3	54	78	5	157	42	20	8	29	1.81
61626729--61626883	27	5.7	27	82	4	170	41	20	9	29	1.83
61626757--61626990	54	4.3	56	74	9	180	40	19	8	31	1.82
61626765--61626973	27	7.7	27	80	6	147	39	17	9	33	1.82
61626987--61627088	27	3.8	27	70	10	73	37	18	20	23	1.94
61627898--61627967	25	2.8	24	85	8	86	25	30	22	21	1.99
61628115--61628248	42	3.2	42	95	0	241	32	14	19	34	1.91
61628272--61628355	31	2.7	31	90	1	134	27	17	27	27	1.98
61631383--61631423	15	2.7	16	88	7	59	46	0	14	39	1.45
61639592--61639633	22	2.1	19	86	13	57	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61639592--61639630	16	2.5	15	83	8	51	46	0	0	53	1.00
61647961--61648341	47	8.0	47	92	2	600	31	9	30	28	1.88
61647961--61648341	96	4.0	96	92	3	617	31	9	30	28	1.88
61648462--61648540	37	2.1	37	90	0	122	24	18	31	25	1.98
61651863--61652405	47	11.5	47	95	0	933	32	9	29	28	1.88
61652211--61652288	22	3.4	22	65	22	61	32	11	29	26	1.91
61654499--61654529	13	2.4	13	94	0	53	22	54	6	16	1.64
61657200--61657279	39	2.1	39	100	0	160	26	12	15	46	1.81
61657796--61657850	27	2.0	27	82	6	67	50	1	3	43	1.30
61669047--61669076	10	2.8	11	90	10	53	26	0	0	73	0.84
61669300--61669345	23	2.0	24	83	12	60	50	6	0	43	1.28
61673586--61673642	24	2.4	24	93	0	105	42	15	24	17	1.88
61681944--61681986	21	2.0	21	100	0	86	32	13	18	34	1.90
61708128--61708172	22	2.0	22	100	0	90	31	13	17	37	1.89
61718000--61718183	79	2.3	80	81	6	214	25	23	27	24	2.00
61718001--61718183	40	4.6	40	81	8	205	25	23	27	24	2.00
61718001--61718216	79	2.7	78	76	12	208	26	22	26	24	2.00
61740005--61740189	79	2.3	81	83	7	227	24	22	27	24	2.00
61740006--61740189	40	4.6	40	82	9	207	25	22	27	24	2.00
61740058--61740222	79	2.1	79	83	6	201	26	21	27	24	1.99
61747961--61748145	79	2.3	81	83	7	227	24	22	27	24	2.00
61747962--61748145	40	4.6	40	82	9	207	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61748014--61748178	79	2.1	79	83	6	201	26	21	27	24	1.99
61752589--61752693	53	2.0	53	84	0	138	38	17	24	20	1.93
61755424--61755645	99	2.3	92	82	6	248	25	21	31	22	1.98
61755419--61755691	47	5.7	49	74	10	185	26	20	30	21	1.98
61759790--61759902	37	3.0	37	90	1	163	28	29	16	25	1.97
61760060--61760292	47	5.0	47	90	1	324	25	28	11	34	1.90
61760215--61760293	25	3.3	25	67	16	67	31	27	6	34	1.82
61764626--61764937	40	7.8	40	93	0	498	25	27	22	24	2.00
61769998--61770101	50	2.1	50	100	0	208	31	24	17	26	1.97
61774874--61775059	40	4.7	40	86	6	218	26	26	21	25	1.99
61774874--61775059	80	2.3	82	84	7	240	26	26	21	25	1.99
61777909--61778089	67	2.8	64	79	8	188	24	30	16	29	1.96
61778824--61778884	30	2.0	30	87	0	86	29	24	8	37	1.84
61786441--61786501	27	2.3	27	82	0	77	31	21	27	19	1.97
61788177--61788218	20	2.1	20	100	0	84	19	35	16	28	1.93
61799550--61799585	16	2.2	17	90	5	56	25	0	30	44	1.54
61802360--61802523	45	3.7	44	84	9	199	25	28	21	25	1.99
61806729--61806862	47	2.8	48	82	10	155	24	29	15	29	1.96
61806738--61807046	46	6.6	46	73	11	168	26	28	16	28	1.97
61813816--61813978	83	2.0	83	97	0	308	39	14	12	33	1.83
61816504--61816548	23	2.0	23	86	0	63	64	0	4	31	1.13
61819980--61820157	27	6.6	27	82	5	171	28	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61820001--61820156	82	1.9	81	85	3	215	28	28	16	26	1.97
61833669--61833699	14	2.2	14	94	0	53	19	6	12	61	1.53
61833730--61833791	30	2.1	30	93	0	106	24	3	12	59	1.48
61833875--61833919	18	2.5	18	100	0	90	15	0	17	66	1.25
61834340--61834366	8	3.4	8	100	0	54	25	0	11	62	1.28
61836240--61836344	52	2.0	52	94	0	183	19	30	26	23	1.98
61845423--61845461	15	2.6	15	88	8	53	33	0	0	66	0.92
61853797--61853870	29	2.5	28	74	23	80	39	0	32	28	1.57
61853917--61853976	30	2.0	30	80	3	68	45	0	35	20	1.51
61858189--61858354	86	1.9	86	90	2	262	21	13	22	42	1.88
61858354--61858398	16	2.9	16	86	3	56	40	6	20	33	1.78
61858559--61858629	37	1.9	37	91	0	115	46	1	2	49	1.25
61858588--61858659	26	3.0	25	71	19	71	48	1	0	50	1.09
61858634--61858679	15	2.9	17	75	24	55	43	0	0	56	0.99
61858639--61858718	16	5.1	16	74	14	69	41	1	1	56	1.15
61858639--61858725	32	2.7	33	83	11	103	40	1	1	57	1.14
61861175--61861207	15	2.2	15	94	0	57	33	3	18	45	1.65
61861250--61861299	26	1.9	26	91	0	82	42	14	12	32	1.82
61867995--61868035	22	1.9	21	85	5	55	63	2	2	31	1.20
61877088--61877316	113	2.0	113	96	0	422	25	16	25	32	1.96
61877263--61877401	60	2.3	60	82	6	156	28	19	26	25	1.99
61878511--61878565	26	2.0	28	89	6	87	60	7	10	21	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61888573--61888689	31	3.8	30	72	13	103	53	5	1	39	1.33
61888571--61888687	61	1.9	61	91	0	189	53	5	1	39	1.33
61891781--61891827	17	2.8	17	75	15	53	42	21	14	21	1.88
61898546--61899187	312	2.1	312	92	1	1070	37	17	9	35	1.82
61900403--61900428	12	2.2	12	100	0	52	69	0	0	30	0.89
61912466--61912506	21	1.9	22	85	5	57	34	0	24	41	1.55
61912605--61912632	14	2.0	14	100	0	56	35	7	21	35	1.81
61915073--61915169	49	2.0	49	93	0	167	29	11	19	39	1.87
61917395--61917445	24	2.1	24	92	0	84	47	23	23	5	1.73
61917399--61917445	8	5.9	8	87	0	67	42	25	25	6	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295