genome.fa.s7.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  116  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34875901--34875932	16	2.0	16	93	0	55	25	28	25	21	1.99
34876205--34876242	18	2.1	19	85	5	51	23	10	26	39	1.87
34877307--34877355	20	2.5	20	93	0	80	36	2	0	61	1.08
34877307--34877366	20	3.0	19	83	9	57	41	1	0	56	1.09
34877462--34877502	19	2.2	19	91	4	66	19	2	4	73	1.13
34886119--34886154	17	2.2	16	90	5	54	44	5	0	50	1.25
34887114--34887274	42	3.8	42	79	6	173	27	23	14	33	1.94
34893240--34893321	22	3.7	23	73	11	80	57	1	0	41	1.06
34893368--34893421	17	3.3	17	68	19	51	40	0	5	53	1.24
34893334--34893442	32	3.2	33	75	11	114	43	1	3	51	1.30
34901474--34901512	20	1.9	20	85	15	53	38	15	2	43	1.60
34912437--34912498	28	2.1	28	91	5	97	41	1	6	50	1.38
34913806--34913945	39	3.6	39	83	0	190	37	12	14	36	1.83
34913795--34913941	78	1.9	78	88	0	222	37	12	13	36	1.82
34920164--34920192	13	2.2	13	100	0	58	55	13	0	31	1.39
34926281--34926451	38	4.5	38	91	2	256	19	22	26	30	1.98
34926444--34926569	45	2.8	45	86	2	182	20	22	28	28	1.98
34927530--34927556	6	4.5	6	100	0	54	85	0	0	14	0.61
34932988--34933016	13	2.2	13	100	0	58	55	13	0	31	1.39
34933553--34933591	15	2.7	15	84	4	53	41	2	0	56	1.13
34952223--34952270	24	2.0	24	84	4	62	29	43	2	25	1.66
34960988--34961210	39	5.7	39	93	1	331	18	21	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34975861--34975891	2	15.5	2	93	0	53	45	0	0	54	0.99
34975862--34975898	18	2.1	18	90	5	58	45	0	0	54	1.00
34980889--34980960	35	2.1	35	100	0	144	22	27	15	34	1.94
34981791--34981869	41	1.9	41	94	0	140	49	16	8	25	1.74
34983941--34983993	26	2.0	26	82	13	65	26	13	22	37	1.91
34995544--34995715	93	1.8	93	81	7	215	27	17	29	25	1.97
34995639--34995763	49	2.6	47	88	3	169	29	17	28	24	1.97
34996869--34996937	28	2.5	28	73	4	68	20	24	37	17	1.93
34997468--34997515	25	1.9	25	100	0	96	31	4	27	37	1.76
34999882--35000007	27	4.7	27	78	0	126	17	20	22	39	1.92
34999965--35000021	27	2.1	27	80	6	62	19	12	22	45	1.83
35005526--35005645	56	2.1	56	96	0	222	45	9	22	22	1.80
35006771--35006995	79	2.8	80	83	9	289	24	22	27	25	2.00
35006771--35006995	40	5.7	40	85	7	289	24	22	27	25	2.00
35006771--35007028	119	2.2	119	82	8	294	25	21	27	25	2.00
35012819--35012938	56	2.1	56	98	0	231	45	9	23	22	1.81
35014067--35014363	80	3.7	79	84	7	336	25	21	27	25	1.99
35014121--35014363	120	2.0	118	85	6	330	26	20	27	25	1.99
35014066--35014330	40	6.7	40	87	6	342	24	21	27	26	1.99
35018529--35018570	17	2.2	20	88	12	63	66	0	33	0	0.92
35019405--35019430	6	4.3	6	100	0	52	19	19	15	46	1.85
35026374--35026525	18	8.5	18	84	5	193	36	15	11	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35026374--35026525	35	4.3	35	92	2	241	36	15	11	36	1.83
35033158--35033217	31	1.9	31	100	0	120	40	13	30	16	1.87
35035030--35035118	42	2.1	42	93	0	151	28	21	15	34	1.94
35049740--35049824	42	2.0	42	100	0	170	23	23	14	38	1.91
35053892--35053921	11	2.7	11	94	0	51	50	13	0	36	1.42
35058372--35058446	31	2.4	31	81	0	96	38	5	13	42	1.67
35059114--35059153	20	2.0	20	85	0	53	67	2	5	25	1.23
35065040--35065176	65	2.1	65	82	6	163	45	3	20	29	1.68
35065153--35065177	6	4.2	6	100	0	50	68	0	16	16	1.22
35065166--35065207	18	2.4	18	96	4	77	54	11	16	16	1.70
35068714--35068748	18	1.9	18	94	0	61	40	2	0	57	1.14
35069196--35069237	21	2.0	21	100	0	84	47	19	9	23	1.78
35073012--35073059	17	2.9	17	90	3	80	39	45	4	10	1.58
35073435--35073465	16	1.9	16	93	0	53	3	16	0	80	0.83
35074305--35074542	3	81.3	3	66	21	96	29	6	1	61	1.31
35074307--35074408	26	3.6	28	72	23	81	29	7	1	60	1.36
35074359--35074460	26	4.2	25	73	19	81	33	4	2	58	1.34
35074380--35074488	38	2.8	40	76	17	104	30	4	1	63	1.25
35074387--35074463	32	2.7	29	68	31	51	33	2	2	61	1.24
35075028--35075056	11	2.7	11	94	5	51	37	0	6	55	1.27
35075082--35075134	25	2.2	24	83	12	65	35	18	3	41	1.69
35076596--35076630	16	2.2	16	94	0	61	60	0	40	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35077799--35077843	22	2.0	22	95	0	81	35	8	2	53	1.45
35082836--35082875	20	2.0	20	100	0	80	20	10	35	35	1.86
35086641--35086675	16	2.2	16	100	0	70	42	0	0	57	0.99
35090611--35090788	79	2.2	80	81	8	204	24	23	28	24	2.00
35090611--35090788	40	4.5	40	82	7	204	24	23	28	24	2.00
35090663--35090817	79	2.0	79	81	7	181	25	20	27	25	1.99
35108929--35109104	46	3.8	46	79	12	207	20	20	29	29	1.98
35108926--35109097	93	1.8	93	94	0	308	20	20	29	28	1.98
35116039--35116214	46	3.8	46	79	12	216	20	21	29	28	1.98
35116036--35116207	93	1.8	93	96	0	317	20	21	29	27	1.98
35130230--35130452	40	5.6	40	86	3	236	24	21	27	26	1.99
35130305--35130487	79	2.3	80	82	1	226	25	20	27	25	1.99
35138155--35138324	40	4.3	40	89	0	207	24	21	27	26	1.99
35138102--35138326	80	2.8	79	82	3	245	24	20	27	26	1.99
35138177--35138358	79	2.3	80	81	1	215	26	20	26	25	1.99
35140030--35140119	45	2.0	45	95	2	164	42	13	11	33	1.79
35145962--35146031	12	5.8	12	70	6	52	32	2	40	24	1.70
35145962--35146035	24	3.1	24	92	0	112	32	2	41	22	1.68
35147465--35147570	27	3.9	26	82	7	122	17	23	21	36	1.95
35147465--35147574	54	2.0	54	85	3	150	17	23	20	38	1.93
35150267--35150336	22	3.3	21	78	9	81	37	18	25	18	1.94
35150984--35151008	13	1.9	13	100	0	50	4	48	24	24	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35154556--35155013	47	9.7	47	95	0	790	32	8	28	30	1.88
35154829--35154909	22	3.5	23	66	11	67	30	9	28	30	1.89
35157026--35157214	43	4.4	43	96	0	351	23	14	35	26	1.93
35157196--35157269	29	2.6	29	89	4	105	25	16	32	25	1.96
35157584--35157844	40	6.5	40	82	3	278	24	22	27	24	2.00
35161368--35161875	47	10.7	47	95	1	856	31	8	28	31	1.88
35161453--35161533	22	3.5	23	66	11	67	30	9	28	30	1.89
35161664--35161742	25	3.3	25	64	10	74	32	5	27	34	1.79
35161368--35161875	236	2.1	238	95	1	930	31	8	28	31	1.88
35163888--35164076	43	4.4	43	96	0	351	23	14	35	26	1.93
35164058--35164131	29	2.6	29	89	4	105	25	16	32	25	1.96
35164446--35164706	40	6.5	40	82	3	278	24	22	27	24	2.00
35168229--35168737	47	10.7	47	95	1	856	31	8	28	31	1.88
35168314--35168394	22	3.5	23	66	11	67	30	9	28	30	1.89
35168526--35168604	25	3.3	25	64	10	74	32	5	27	34	1.79
35168229--35168737	237	2.1	238	95	1	939	31	8	28	31	1.88
35177029--35177136	26	4.2	26	92	0	180	37	23	7	32	1.82
35177579--35177708	43	3.0	43	89	0	188	33	31	14	20	1.93
35178328--35179419	23	47.8	23	73	10	526	38	22	5	33	1.78
35178394--35178559	91	1.8	91	83	5	219	37	24	5	32	1.78
35178500--35179130	183	3.5	183	88	0	924	36	22	6	34	1.79
35178328--35178765	160	2.7	160	95	1	774	38	23	5	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35178866--35179419	160	3.5	160	85	2	754	37	21	5	34	1.78
35180615--35180648	10	3.4	10	100	0	68	44	11	0	44	1.40
35182103--35182134	3	10.7	3	100	0	64	31	0	0	68	0.90
35182397--35182445	16	3.1	16	90	0	71	46	14	4	34	1.63
35182945--35183076	40	3.3	40	82	1	156	25	21	19	33	1.97
35191036--35191099	23	2.7	23	82	2	74	34	12	12	40	1.81
35193085--35193146	26	2.5	26	81	5	74	22	12	1	62	1.38
35197874--35197915	21	2.0	21	90	0	66	38	23	23	14	1.92
35205648--35206097	43	10.2	44	65	19	204	30	21	22	26	1.99
35205625--35206097	133	3.6	133	95	1	840	30	21	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295