genome.fa.s7.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  103  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30530136--30530185	25	2.0	25	84	0	64	40	14	20	26	1.90
30534281--30534368	27	3.0	29	70	18	76	44	1	1	53	1.15
30536914--30536946	14	2.3	15	89	5	50	30	0	0	69	0.88
30548058--30548404	177	2.0	177	92	0	577	34	17	9	38	1.82
30549422--30549641	47	4.7	47	77	13	177	23	27	18	30	1.97
30549422--30549647	94	2.4	93	82	3	256	23	27	18	30	1.98
30552220--30552260	13	3.2	12	83	10	55	78	0	21	0	0.76
30552588--30552635	22	2.1	22	85	11	62	45	0	25	29	1.53
30567514--30567711	47	4.3	47	76	10	176	30	17	26	25	1.97
30567514--30567732	93	2.3	93	79	4	226	30	18	26	25	1.98
30579776--30579818	18	2.4	18	88	7	61	37	2	0	60	1.10
30585835--30585875	21	2.0	21	90	0	64	24	12	7	56	1.61
30586113--30586153	20	2.0	21	86	13	59	51	0	26	21	1.48
30597944--30598062	20	5.9	20	70	3	78	36	23	20	19	1.95
30598132--30598214	38	2.2	38	82	6	107	44	12	19	24	1.84
30604033--30604112	40	2.0	40	83	9	101	47	3	6	42	1.46
30604265--30604308	20	2.2	20	91	0	70	40	0	0	59	0.98
30606545--30606831	3	97.3	3	70	10	137	61	1	7	29	1.31
30606544--30606658	38	3.1	37	74	9	99	60	0	10	28	1.36
30608293--30608345	28	1.9	28	85	11	74	49	1	7	41	1.42
30620258--30620303	19	2.4	19	92	0	83	26	0	8	65	1.21
30621010--30621074	10	6.5	10	77	13	71	58	0	4	36	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30621010--30621077	30	2.3	30	84	5	93	60	0	4	35	1.17
30630057--30630133	22	3.4	22	73	16	75	33	11	29	24	1.91
30630022--30630177	47	3.3	47	82	4	192	33	10	29	26	1.89
30630248--30630332	40	2.2	40	84	2	109	18	21	30	29	1.97
30633762--30633846	37	2.3	36	84	9	102	44	1	3	50	1.26
30637067--30637106	19	2.1	19	95	0	71	45	5	7	42	1.54
30647383--30647422	17	2.4	16	91	4	62	30	2	0	67	1.04
30659477--30659848	176	2.1	177	90	2	595	34	18	19	26	1.95
30659891--30660012	44	2.8	44	78	8	133	34	16	21	27	1.95
30661668--30661717	18	2.7	20	79	20	63	26	2	4	68	1.18
30663157--30663201	23	2.0	23	86	8	65	51	4	0	44	1.21
30667519--30667554	13	2.8	13	95	0	63	58	0	2	38	1.13
30667518--30667547	7	4.4	7	91	8	53	60	0	0	40	0.97
30667553--30667591	19	2.0	19	85	5	51	56	0	17	25	1.41
30672809--30672833	6	4.2	6	100	0	50	32	16	36	16	1.90
30673468--30673502	18	2.0	17	88	5	52	45	0	0	54	0.99
30673662--30673756	45	2.1	44	88	1	136	33	27	6	32	1.82
30673735--30673804	16	4.4	16	96	0	104	32	35	0	31	1.58
30675293--30675361	32	2.2	30	90	7	111	8	10	1	79	0.99
30675302--30675372	32	2.3	32	88	7	103	11	9	1	77	1.06
30675330--30675378	22	2.2	23	82	10	57	12	10	0	77	0.99
30675470--30675507	18	2.1	18	90	0	58	21	2	0	76	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30675602--30675648	20	2.3	20	86	13	62	70	0	6	23	1.10
30675700--30675726	14	1.9	14	100	0	54	55	0	0	44	0.99
30675700--30675841	37	4.0	36	75	9	132	57	2	1	38	1.22
30675805--30675861	21	2.6	23	78	16	57	59	1	1	36	1.18
30675893--30675956	9	7.5	8	81	13	67	81	3	4	10	0.96
30675893--30675956	17	3.7	17	79	8	76	81	3	4	10	0.96
30675887--30675990	43	2.4	43	82	7	113	75	2	6	15	1.14
30675987--30676044	16	3.8	16	78	17	77	75	1	10	12	1.11
30675980--30676047	30	2.4	28	87	7	100	76	1	10	11	1.09
30677029--30677063	17	2.1	17	89	10	54	45	2	0	51	1.16
30678426--30678521	32	3.1	31	75	19	94	43	12	8	35	1.73
30682314--30682368	3	18.3	3	100	0	110	34	0	0	65	0.93
30685093--30685155	6	10.2	6	81	10	56	77	0	22	0	0.76
30685101--30685158	13	4.5	13	75	16	59	77	0	22	0	0.77
30692591--30692635	24	2.0	24	86	8	67	44	17	6	31	1.75
30695957--30695982	5	5.2	5	100	0	52	42	57	0	0	0.98
30696024--30696063	20	2.0	20	85	0	53	75	7	2	15	1.14
30696081--30696157	9	8.6	9	84	5	102	27	7	19	45	1.77
30703530--30703658	37	3.5	37	95	0	231	25	19	18	36	1.94
30703622--30703890	52	5.2	52	87	6	361	27	22	14	35	1.93
30703622--30703882	98	2.6	98	88	3	387	28	22	13	35	1.92
30707418--30707450	17	2.0	17	88	5	50	30	12	6	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30708255--30708281	13	2.1	13	100	0	54	14	33	37	14	1.88
30712809--30712875	16	3.6	18	76	15	57	49	4	1	44	1.31
30712803--30712845	16	2.6	16	81	7	50	46	6	2	44	1.43
30712979--30713006	13	2.2	13	100	0	56	42	10	7	39	1.67
30713876--30713926	22	2.3	23	79	6	59	41	1	1	54	1.22
30715450--30715578	46	2.8	45	80	7	134	23	18	21	36	1.95
30715450--30715564	46	2.5	47	82	4	135	22	17	21	38	1.93
30718001--30718072	31	2.2	33	80	11	87	58	9	1	30	1.39
30723359--30723392	16	2.1	16	100	0	68	17	11	29	41	1.85
30725123--30725435	158	2.0	158	92	1	520	25	18	28	27	1.98
30725357--30725520	44	3.6	45	72	14	124	26	18	29	24	1.98
30732992--30733163	46	3.7	43	80	14	159	29	19	28	23	1.98
30734247--30734278	17	1.9	16	93	6	55	34	18	31	15	1.93
30736825--30736854	9	3.2	9	95	4	51	10	0	23	66	1.21
30737080--30737127	21	2.3	21	88	0	69	27	27	29	16	1.97
30743332--30743424	40	2.3	40	81	7	109	30	23	13	32	1.94
30744860--30744890	8	3.9	8	100	0	62	51	25	9	12	1.70
30744820--30744921	50	2.0	52	86	7	147	42	28	5	23	1.77
30745415--30745448	3	11.3	3	100	0	68	67	0	0	32	0.91
30750499--30750550	22	2.5	21	78	9	54	5	7	7	78	1.08
30750516--30750559	21	2.1	21	82	0	52	9	11	2	77	1.08
30751444--30751505	29	2.1	29	100	0	124	30	0	12	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30754742--30754807	30	2.2	30	86	0	87	28	30	19	21	1.98
30758596--30758637	21	2.0	21	95	0	75	50	23	11	14	1.76
30795186--30795362	27	6.6	27	93	1	284	27	14	27	30	1.95
30803046--30803197	27	5.6	27	90	2	223	26	14	28	30	1.95
30803046--30803197	55	2.8	55	89	2	234	26	14	28	30	1.95
30803046--30803197	82	1.9	82	91	0	250	26	14	28	30	1.95
30811137--30811288	27	5.6	27	90	2	223	26	14	28	30	1.95
30811137--30811288	55	2.8	55	89	2	234	26	14	28	30	1.95
30811137--30811288	82	1.9	82	91	0	250	26	14	28	30	1.95
30819914--30820054	43	3.3	43	84	6	171	31	25	18	24	1.98
30819914--30820071	43	3.7	42	81	7	131	31	24	18	25	1.98
30826452--30826494	7	5.6	7	82	15	50	25	4	0	69	1.07
30833323--30833360	17	2.2	17	90	9	60	68	2	0	28	1.03
30849171--30849208	14	2.9	13	81	11	51	57	7	15	18	1.62
30854317--30854391	25	3.0	25	74	2	78	34	14	8	42	1.75
30869444--30869486	16	2.7	16	96	0	77	48	16	23	11	1.78
30869718--30869843	29	4.4	28	77	7	128	29	14	31	24	1.94
30869737--30869844	29	3.8	29	83	3	139	25	14	35	25	1.94
30876548--30876720	45	3.8	45	96	0	310	29	25	22	22	1.99
30877476--30877617	47	3.0	47	92	1	241	41	16	12	29	1.85
30880593--30880694	33	3.1	33	81	5	91	31	11	23	33	1.91
30883043--30883082	20	2.0	22	85	14	59	32	5	15	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30891252--30891332	40	2.0	42	87	4	121	19	41	20	17	1.90
30916530--30916570	20	2.0	20	95	0	73	21	43	7	26	1.79
30924731--30924887	46	3.3	46	86	10	149	35	14	22	28	1.92
30924679--30924887	52	4.1	51	85	9	284	34	13	22	28	1.93
30924665--30924888	98	2.3	98	94	0	394	34	14	23	28	1.93
30924850--30925016	37	4.5	37	97	0	307	37	16	19	25	1.93
30933797--30933850	16	3.5	16	70	10	58	46	7	24	22	1.77
30933794--30933868	30	2.5	30	97	0	141	42	6	28	22	1.78
30934303--30934476	46	3.8	46	77	10	192	22	20	28	28	1.99
30934297--30934469	93	1.9	93	91	0	283	22	20	28	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295