genome.fa.s7.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  154  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48423971--48424014	19	2.3	18	80	7	52	54	6	0	38	1.27
48432463--48432504	17	2.4	18	80	4	50	57	2	2	38	1.25
48438255--48438430	68	2.6	68	76	13	150	21	28	17	33	1.95
48441620--48441739	43	2.8	42	79	7	134	30	17	24	28	1.97
48444903--48444953	21	2.4	21	93	0	84	13	21	45	19	1.85
48450391--48450418	14	2.0	14	100	0	56	50	0	0	50	1.00
48461904--48461937	17	2.0	17	100	0	68	29	17	23	29	1.97
48472589--48472672	20	4.2	20	72	6	80	15	25	15	44	1.85
48486552--48486602	26	2.0	26	84	0	66	41	17	3	37	1.68
48487394--48487437	13	3.6	13	82	17	58	40	47	2	9	1.48
48487462--48487508	6	7.5	6	86	9	67	78	4	0	17	0.90
48487462--48487508	20	2.5	19	83	10	69	78	4	0	17	0.90
48487528--48487586	9	6.6	9	84	0	82	27	8	18	45	1.78
48491925--48491957	16	2.0	17	88	5	50	24	3	3	69	1.16
48492186--48492241	9	6.9	9	76	17	52	60	0	1	37	1.07
48492170--48492237	31	2.2	31	91	2	109	61	0	5	32	1.20
48492186--48492250	22	3.1	22	72	18	59	56	0	1	41	1.08
48493289--48493402	43	2.7	43	92	0	183	26	19	30	23	1.98
48493285--48493422	43	3.2	43	81	8	165	26	21	28	23	1.99
48493472--48493553	31	2.6	31	82	1	92	60	19	3	15	1.49
48497152--48497221	28	2.5	28	88	9	99	31	27	14	27	1.95
48504092--48504197	40	2.6	39	76	8	97	27	27	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48512066--48512171	40	2.7	40	76	8	108	26	27	22	23	2.00
48516172--48516248	38	2.0	38	100	0	154	29	23	15	31	1.95
48516210--48516274	28	2.3	28	87	10	89	32	24	13	29	1.94
48521503--48521657	9	16.6	9	73	14	73	39	0	12	47	1.46
48521608--48521661	27	2.0	28	88	3	83	37	0	14	48	1.45
48521762--48521817	15	3.8	15	81	13	80	51	0	0	48	1.00
48521994--48522061	24	2.8	24	89	8	111	44	7	20	27	1.78
48522153--48523062	372	2.4	373	97	0	1714	38	10	14	35	1.81
48527274--48527305	15	2.1	15	94	0	55	31	9	0	59	1.29
48527704--48527754	18	2.8	18	87	3	75	49	1	1	47	1.24
48528059--48528289	41	5.6	41	91	2	374	25	29	20	23	1.99
48528262--48528394	41	3.3	41	84	3	153	19	21	24	34	1.96
48528051--48528312	123	2.1	121	84	8	352	24	27	20	27	1.99
48529139--48529177	19	2.0	20	90	5	62	58	0	2	38	1.12
48533612--48533636	13	1.9	13	100	0	50	8	12	16	64	1.49
48538017--48538121	53	2.0	53	86	0	147	21	24	15	38	1.92
48538029--48538212	55	3.4	53	80	2	170	21	23	17	36	1.94
48538216--48538287	36	2.0	36	97	0	135	27	25	9	37	1.87
48559654--48559703	17	3.1	17	80	13	61	48	14	10	28	1.75
48561514--48561593	39	2.1	39	82	0	97	30	16	17	36	1.92
48567897--48567947	13	3.9	13	80	10	68	31	9	21	37	1.86
48568602--48568663	13	4.8	13	78	7	72	38	24	4	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48570999--48571039	21	2.0	21	100	0	82	36	0	19	43	1.51
48574590--48574648	30	1.9	30	86	3	82	47	3	20	28	1.66
48580632--48580937	169	1.8	168	80	7	368	42	5	19	32	1.75
48581152--48581178	7	3.9	7	100	0	54	44	0	11	44	1.39
48581567--48581642	25	3.2	25	83	9	88	18	22	18	40	1.91
48586492--48586541	22	2.3	22	86	3	66	16	30	34	20	1.94
48588087--48588243	43	3.7	43	74	9	133	26	22	25	25	2.00
48588087--48588235	42	3.5	43	73	14	119	27	22	24	25	2.00
48588084--48588243	85	1.9	86	84	3	216	26	22	25	25	2.00
48591735--48591791	20	2.9	20	73	2	53	28	15	22	33	1.95
48591829--48591932	28	3.6	27	68	25	70	28	19	24	27	1.98
48591782--48591912	60	2.2	60	83	8	160	29	19	25	25	1.99
48604876--48604992	46	2.5	46	87	2	155	21	29	20	29	1.98
48614301--48614787	47	10.3	47	92	1	721	26	29	10	33	1.89
48618276--48618583	40	7.7	40	91	0	465	25	28	21	23	1.99
48618637--48618711	38	2.0	38	86	5	107	24	26	18	30	1.98
48621137--48621672	47	11.3	47	91	3	785	26	30	9	33	1.89
48621158--48621671	190	2.7	190	95	1	917	26	30	10	32	1.90
48624390--48624558	47	3.6	47	71	16	170	30	28	18	21	1.97
48624344--48624608	93	2.8	93	88	1	397	29	27	19	22	1.98
48624336--48624604	46	5.8	46	71	12	210	30	27	19	22	1.98
48631617--48631674	30	2.0	29	86	3	80	44	15	8	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48633236--48633536	39	7.6	39	90	5	407	24	27	22	25	2.00
48641305--48641644	79	4.3	79	88	5	451	25	27	21	25	2.00
48641305--48641644	39	8.6	39	88	5	440	25	27	21	25	2.00
48641305--48641644	118	2.9	118	91	5	512	25	27	21	25	2.00
48643830--48644112	48	5.9	48	78	4	248	23	30	18	27	1.98
48643837--48644104	96	2.8	96	80	4	308	23	30	19	27	1.98
48646029--48646082	28	1.9	28	100	0	108	42	24	18	14	1.88
48647691--48647755	33	2.0	33	87	0	94	23	23	27	26	2.00
48661213--48661253	16	2.4	17	88	8	57	56	7	7	29	1.54
48663601--48663625	13	1.9	13	100	0	50	16	8	28	48	1.74
48671098--48671146	25	2.0	25	87	0	71	36	20	10	32	1.86
48681442--48681815	53	6.9	53	83	6	466	21	25	18	34	1.96
48681457--48681815	108	3.3	108	97	0	664	21	26	18	33	1.96
48685304--48685483	90	2.0	90	96	0	333	42	20	8	28	1.81
48686170--48686283	43	2.7	43	79	8	115	34	27	14	23	1.94
48685499--48686408	456	2.0	456	96	0	1660	30	23	13	32	1.93
48695508--48695534	8	3.4	8	100	0	54	33	0	11	55	1.35
48699481--48699556	34	2.2	34	90	0	116	28	23	19	27	1.98
48702501--48702557	22	2.6	22	88	0	87	19	28	35	17	1.94
48705129--48705212	44	1.9	44	85	0	114	29	15	23	30	1.95
48705149--48705259	45	2.5	46	85	4	138	27	11	21	39	1.88
48706146--48706325	51	3.4	52	88	9	281	51	10	21	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48706245--48706274	13	2.3	13	94	0	51	80	0	20	0	0.72
48706194--48706325	57	2.3	56	92	6	212	53	9	21	15	1.69
48707572--48707824	40	6.4	40	87	2	316	23	22	28	26	1.99
48710211--48710278	25	2.8	25	77	6	77	25	19	23	32	1.97
48714228--48714305	29	2.7	28	84	11	104	25	15	30	28	1.96
48714258--48714584	173	1.9	174	93	0	566	29	14	24	31	1.94
48722342--48722419	29	2.7	28	84	11	104	25	15	30	28	1.96
48725961--48726012	16	3.4	16	75	20	65	34	0	28	36	1.58
48725951--48726013	30	2.1	30	100	0	126	33	0	30	36	1.58
48725914--48726443	94	5.9	83	87	8	442	33	7	29	29	1.86
48725981--48726445	47	9.8	47	95	0	750	33	8	29	29	1.86
48729201--48729528	164	2.0	164	89	4	502	34	25	1	38	1.66
48729413--48729452	20	2.0	20	85	9	55	25	30	0	45	1.54
48729826--48729863	19	2.0	19	94	0	67	28	10	28	31	1.90
48735232--48735455	40	5.6	40	89	1	297	26	28	22	22	1.99
48735233--48735455	120	1.9	120	87	1	331	26	27	22	22	1.99
48736698--48736817	56	2.2	55	95	1	213	16	21	10	51	1.73
48743328--48743489	40	4.1	40	90	4	233	25	29	22	22	1.99
48771224--48771334	27	4.2	26	86	5	141	36	21	24	17	1.94
48773761--48773801	12	3.3	12	93	3	64	17	21	0	60	1.35
48773761--48773801	18	2.2	19	83	12	50	17	21	0	60	1.35
48781175--48781330	43	3.6	43	91	0	240	28	30	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48784449--48784494	23	2.0	23	100	0	92	34	30	8	26	1.86
48786625--48786691	23	3.0	23	82	6	84	40	37	0	22	1.54
48787161--48787349	41	4.6	41	87	1	254	28	26	21	23	1.99
48787161--48787349	81	2.3	82	85	0	254	28	26	21	23	1.99
48787322--48787444	41	3.0	40	77	12	133	20	21	21	37	1.95
48800449--48800480	15	2.1	15	100	0	64	37	37	0	25	1.56
48811639--48811692	24	2.2	24	86	0	81	25	1	22	50	1.59
48815726--48815826	28	3.4	28	71	17	96	34	15	22	26	1.95
48815714--48815832	61	2.0	61	93	0	202	37	15	21	25	1.93
48815725--48815916	61	3.3	57	83	5	179	34	16	22	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295