genome.fa.s7.2.7.7.80.10.50.1000.294.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  294  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93354267--93354316	18	2.8	18	79	8	57	2	20	0	78	0.86
93354281--93354316	19	1.9	19	88	5	56	2	16	0	80	0.83
93357912--93357952	20	2.2	18	86	8	55	29	2	9	58	1.43
93361111--93361144	17	2.0	17	88	0	50	32	14	8	44	1.76
93372794--93372826	15	2.2	15	94	0	57	45	3	33	18	1.65
93375108--93375136	15	2.0	15	93	6	51	27	3	0	68	1.05
93375970--93376070	49	2.1	49	84	0	130	29	22	6	40	1.80
93377371--93377456	43	2.0	43	86	0	118	22	20	3	53	1.61
93381952--93382011	30	2.0	30	93	0	102	58	11	5	25	1.53
93384888--93384953	21	3.3	21	72	20	68	12	24	22	40	1.88
93384870--93384970	39	2.6	39	90	0	157	13	25	22	37	1.92
93386972--93387005	12	2.8	12	81	0	50	52	0	23	23	1.47
93391287--93391324	19	2.0	19	89	0	58	63	15	5	15	1.48
93403846--93403885	21	1.9	21	84	0	53	57	2	10	30	1.45
93409903--93409966	31	2.0	32	85	8	87	45	0	7	46	1.32
93410385--93410441	15	3.9	15	83	2	80	35	1	12	50	1.50
93410811--93410909	23	4.4	23	85	11	134	13	23	24	39	1.90
93411149--93411211	28	2.2	28	100	0	126	33	9	22	34	1.86
93420854--93420884	5	6.2	5	92	0	53	80	0	0	19	0.71
93424360--93424385	11	2.4	11	100	0	52	7	11	38	42	1.70
93424404--93424447	3	14.7	3	100	0	88	31	0	0	68	0.90
93439363--93439408	24	1.9	24	81	0	56	32	4	15	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93442463--93442495	17	1.9	17	93	0	57	15	33	3	48	1.60
93444221--93444257	19	1.9	19	88	0	56	21	27	8	43	1.80
93455362--93455414	27	2.0	27	85	7	72	37	1	3	56	1.28
93457511--93457542	15	2.1	15	94	0	55	62	3	6	28	1.34
93460982--93461036	16	3.4	16	76	20	60	60	3	0	36	1.15
93467127--93467260	65	2.1	65	98	0	259	43	8	22	25	1.82
93469222--93469287	22	3.3	22	64	27	65	50	1	9	39	1.44
93469222--93469295	37	2.0	37	100	0	148	45	2	10	40	1.53
93471340--93471396	30	1.9	30	85	0	78	14	40	22	22	1.90
93473834--93473884	25	2.0	25	100	0	102	43	27	9	19	1.82
93477462--93477489	13	2.2	13	100	0	56	50	7	7	35	1.57
93478214--93478264	20	2.5	20	93	0	84	35	13	1	49	1.54
93480888--93481063	46	3.8	46	77	12	189	19	19	30	30	1.97
93480885--93481056	93	1.8	93	92	0	290	20	20	30	29	1.97
93489239--93489270	3	10.7	3	100	0	64	31	0	0	68	0.90
93489271--93489454	72	2.6	72	99	0	359	27	6	23	41	1.79
93493673--93493698	3	8.7	3	100	0	52	30	0	0	69	0.89
93493699--93493882	72	2.6	72	99	0	359	27	6	23	41	1.79
93514336--93514394	31	1.9	31	96	0	109	32	18	8	40	1.81
93514622--93514660	21	1.9	20	89	5	60	28	23	23	25	1.99
93517807--93517846	21	1.9	21	84	0	53	22	32	32	12	1.91
93518947--93519005	31	1.9	31	89	0	91	16	27	6	49	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93520537--93520714	92	1.9	93	91	1	295	18	10	14	56	1.67
93521152--93521201	25	2.0	25	100	0	100	28	28	4	40	1.74
93522116--93522157	22	1.9	22	100	0	84	50	0	0	50	1.00
93522238--93522283	19	2.3	20	96	3	85	47	17	10	23	1.79
93522267--93522309	14	3.0	14	86	3	50	34	16	11	37	1.85
93525265--93525375	47	2.4	47	80	6	127	36	21	15	27	1.93
93526128--93526214	4	21.2	4	74	9	77	3	26	4	65	1.28
93526128--93526246	58	2.1	58	91	3	195	5	26	5	62	1.41
93526239--93526269	14	2.2	14	94	0	53	22	16	0	61	1.34
93530408--93530454	22	2.2	22	81	11	53	38	2	0	59	1.09
93530423--93530587	58	2.9	57	81	7	190	43	0	3	52	1.21
93530533--93530587	26	2.3	23	77	19	60	45	0	0	54	0.99
93534082--93534116	16	2.2	16	90	5	54	2	25	2	68	1.17
93534079--93534111	16	2.1	16	100	0	66	6	24	6	63	1.40
93541320--93541408	32	2.8	32	81	5	101	35	12	4	47	1.62
93550483--93550679	28	7.0	28	85	4	263	29	16	21	31	1.96
93550498--93550679	56	3.2	56	94	1	303	30	17	21	30	1.96
93554761--93554809	23	2.2	22	85	10	64	51	4	4	40	1.40
93565511--93565591	32	2.5	32	79	15	87	43	6	8	41	1.60
93569367--93569406	16	2.7	16	85	14	59	50	32	0	17	1.47
93569359--93569406	8	6.5	8	75	18	50	50	33	0	16	1.46
93569367--93569407	15	2.8	15	82	17	59	48	34	0	17	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93576409--93576448	6	6.7	6	82	0	53	2	32	17	47	1.61
93577455--93577497	20	2.1	21	82	4	52	37	4	16	41	1.69
93583513--93583550	20	1.9	20	84	10	51	44	10	5	39	1.61
93600020--93600157	60	2.3	60	82	7	165	28	20	24	26	1.99
93600765--93600795	2	15.5	2	100	0	62	51	48	0	0	1.00
93602807--93602911	45	2.3	45	85	3	140	41	19	18	20	1.90
93604097--93604122	3	8.7	3	100	0	52	65	0	0	34	0.93
93605012--93605041	15	2.0	15	93	0	51	10	6	10	73	1.25
93605837--93605891	25	2.1	26	86	6	76	69	5	25	0	1.10
93607081--93607141	21	2.9	21	81	13	63	32	1	18	47	1.58
93607502--93607548	5	9.2	5	90	2	67	40	0	21	38	1.53
93607962--93608196	45	5.2	45	94	0	389	18	19	21	40	1.91
93608176--93608200	6	4.2	6	100	0	50	16	16	16	52	1.76
93608370--93608560	18	10.6	18	74	12	133	36	12	15	35	1.86
93608364--93608560	54	3.7	53	73	13	152	36	12	15	36	1.85
93608599--93608640	18	2.3	18	87	0	57	38	11	16	33	1.86
93611353--93611501	74	2.0	74	94	0	262	29	9	10	51	1.67
93611664--93611949	42	6.8	42	90	3	434	33	21	21	23	1.97
93611664--93611951	125	2.3	126	91	1	454	33	21	21	24	1.97
93611664--93612050	42	9.2	42	85	6	387	32	21	19	26	1.97
93611664--93612035	125	3.0	125	86	2	435	31	20	20	26	1.98
93611664--93612035	167	2.2	167	85	2	507	31	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93612103--93612136	14	2.4	14	95	0	59	52	20	8	17	1.71
93612360--93612430	21	3.4	21	84	0	88	2	43	18	35	1.65
93617878--93617965	9	9.9	9	69	28	64	35	0	20	44	1.52
93617923--93618221	26	12.1	26	83	11	371	32	1	20	46	1.57
93617913--93618217	69	4.2	72	78	12	299	32	0	20	45	1.58
93618054--93618174	18	6.4	19	63	24	58	31	1	19	47	1.60
93617923--93618221	123	2.4	121	86	7	392	32	1	20	46	1.57
93618080--93618123	18	2.4	18	84	0	70	34	4	18	43	1.70
93618137--93618217	19	4.5	19	71	22	84	34	0	18	46	1.49
93618258--93618407	73	2.1	73	100	0	300	41	6	1	50	1.37
93618289--93618401	35	3.1	35	67	16	104	38	7	1	52	1.41
93618554--93618624	13	5.5	13	86	0	106	50	2	7	39	1.44
93618553--93618624	26	2.8	26	100	0	144	50	2	6	40	1.44
93618629--93618830	17	11.6	17	72	21	143	42	1	11	44	1.50
93618596--93618839	57	4.5	57	80	14	318	44	2	10	43	1.50
93618646--93618756	44	2.7	40	86	10	177	44	1	10	43	1.50
93618609--93618818	101	2.1	101	96	0	393	44	1	10	42	1.50
93619471--93619503	11	3.1	11	82	8	50	60	18	0	21	1.36
93619697--93619736	11	3.7	11	93	3	64	27	27	10	35	1.89
93620258--93620287	14	2.1	14	100	0	60	53	6	13	26	1.64
93621601--93621652	27	1.9	27	88	0	77	50	9	0	40	1.35
93621720--93621756	10	3.7	10	92	0	65	43	13	0	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93622656--93622832	82	2.2	82	95	0	318	35	20	14	29	1.92
93622972--93623165	41	4.7	41	80	5	205	38	22	23	16	1.93
93622972--93623167	82	2.4	82	97	1	367	38	21	23	16	1.93
93625725--93625766	19	2.2	20	88	12	63	30	0	4	64	1.14
93625671--93625765	8	10.8	8	71	15	55	37	1	2	58	1.17
93629212--93629241	3	10.0	3	100	0	60	0	33	0	66	0.92
93631289--93631338	26	1.9	26	100	0	100	24	18	18	40	1.91
93633489--93633540	14	3.6	14	76	7	50	46	28	0	25	1.53
93633487--93633540	15	3.7	15	76	14	58	46	27	0	25	1.53
93634085--93634250	36	4.6	36	68	21	91	46	1	0	50	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295