genome.fa.s7.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  146  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45390689--45390917	40	5.7	40	94	0	386	25	21	27	25	2.00
45408223--45408263	19	2.2	19	86	4	57	63	12	12	12	1.53
45410367--45410403	6	6.3	6	96	3	67	83	0	0	16	0.64
45410345--45410403	18	3.5	17	79	4	66	79	1	5	13	0.97
45422879--45423296	135	3.1	135	95	0	741	38	21	9	30	1.84
45422879--45423296	27	15.6	27	82	6	447	38	21	9	30	1.84
45422873--45423488	27	22.9	27	79	8	351	36	21	9	32	1.85
45422879--45423488	54	11.3	54	77	7	420	37	21	9	32	1.85
45423472--45423738	27	10.0	27	88	1	358	33	18	22	25	1.97
45423472--45423738	53	5.0	54	87	1	358	33	18	22	25	1.97
45423472--45423729	80	3.2	80	86	1	365	34	18	21	25	1.96
45423472--45423738	107	2.5	107	86	1	383	33	18	22	25	1.97
45423445--45423742	54	5.6	52	81	8	271	34	18	21	26	1.96
45424095--45424153	22	2.7	22	78	5	57	20	25	22	32	1.98
45424541--45424631	6	14.8	6	70	17	62	20	18	14	46	1.84
45424526--45424620	31	3.1	31	90	0	136	20	16	13	49	1.79
45426697--45426873	46	3.9	44	74	11	158	23	19	27	29	1.98
45426694--45426865	93	1.8	93	89	0	272	23	20	27	28	1.99
45428747--45428781	13	2.7	13	95	0	61	51	17	8	22	1.72
45428859--45428931	28	2.6	28	82	4	85	28	27	10	32	1.91
45430084--45430154	28	2.5	29	84	4	92	25	11	30	32	1.91
45433009--45433042	10	3.3	10	91	4	50	88	5	2	2	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45450394--45450424	12	2.6	12	94	0	53	29	25	16	29	1.96
45452371--45452660	40	7.3	40	92	2	406	25	20	27	26	1.99
45452318--45452660	120	2.9	118	86	4	422	25	20	27	26	1.99
45460027--45460314	40	7.2	40	91	1	393	25	19	27	27	1.99
45460027--45460314	79	3.6	80	90	1	411	25	19	27	27	1.99
45464628--45464763	56	2.4	54	84	7	157	30	33	16	19	1.94
45466338--45466379	22	2.0	22	85	4	59	52	0	9	38	1.34
45468105--45468151	20	2.4	20	89	3	69	44	2	0	53	1.12
45476243--45476325	35	2.4	35	95	0	148	32	21	21	24	1.98
45479330--45479472	21	6.9	20	65	17	62	57	1	6	34	1.33
45479565--45479608	19	2.2	20	88	11	65	68	0	6	25	1.14
45481282--45481966	119	5.7	119	91	0	940	30	18	16	34	1.94
45493978--45494121	19	7.0	20	68	15	73	58	0	6	34	1.28
45494079--45494126	20	2.5	19	83	6	62	58	0	4	37	1.18
45493975--45494122	21	7.3	19	68	19	68	58	0	6	35	1.28
45494216--45494252	19	1.9	19	94	0	65	62	2	5	29	1.31
45499333--45499391	31	1.9	31	83	13	77	30	3	3	62	1.28
45506158--45506201	23	1.9	23	85	0	61	34	27	13	25	1.93
45508534--45508631	28	3.5	28	75	0	88	29	21	18	30	1.97
45510733--45510805	29	2.5	29	86	4	94	26	30	16	27	1.97
45518857--45518929	29	2.5	29	86	4	94	26	30	16	27	1.97
45523998--45524083	43	2.0	43	95	0	154	22	19	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45536592--45536649	25	2.4	25	85	2	82	44	0	1	53	1.10
45552607--45553193	44	13.3	44	93	1	955	32	16	25	25	1.96
45556778--45556819	22	1.9	22	85	9	59	42	19	16	21	1.89
45572158--45572330	49	3.6	47	76	8	161	24	26	20	28	1.99
45594089--45594214	39	3.2	39	95	0	216	23	20	29	26	1.99
45594089--45594248	39	4.1	39	90	1	205	23	21	28	26	1.99
45596256--45596341	43	2.0	43	86	0	118	27	29	18	24	1.98
45603472--45603529	30	1.9	31	89	3	91	37	6	25	29	1.82
45604199--45604320	47	2.6	47	90	0	181	36	12	23	27	1.91
45604300--45604495	54	3.6	53	81	7	216	36	17	24	21	1.95
45606153--45606208	28	2.0	29	82	3	69	21	44	19	14	1.86
45611818--45612002	50	3.7	49	81	7	203	25	18	27	28	1.98
45614239--45614298	30	2.0	30	100	0	120	46	20	3	30	1.66
45616373--45616460	42	2.1	42	91	0	140	25	32	19	22	1.97
45634583--45634695	42	2.6	43	72	9	106	35	24	15	24	1.94
45635789--45635832	6	7.3	6	80	10	54	52	13	15	18	1.75
45635789--45635838	12	4.2	12	82	5	57	50	12	18	20	1.78
45635950--45636057	27	4.0	26	82	5	99	37	20	22	20	1.95
45636215--45636266	22	2.4	22	80	0	59	34	21	23	21	1.97
45637270--45637447	27	6.6	27	83	3	205	29	28	15	26	1.96
45637291--45637446	82	1.9	81	89	3	242	29	28	15	26	1.96
45646212--45646281	27	2.6	27	93	2	104	31	30	12	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45646212--45646309	28	3.5	28	90	2	135	31	29	13	25	1.93
45649897--45650168	40	6.8	40	92	1	445	26	21	28	23	1.99
45649889--45650168	122	2.3	122	92	1	458	26	21	28	23	1.99
45658759--45658791	13	2.3	15	90	10	52	69	6	0	24	1.10
45660665--45660697	13	2.6	13	90	4	50	39	0	12	48	1.40
45666064--45666151	5	16.4	5	80	19	90	18	2	2	77	0.98
45666067--45666152	6	14.7	6	78	11	81	17	2	2	77	0.97
45666062--45666138	26	2.9	26	81	16	88	18	3	1	76	1.01
45672204--45672247	16	2.8	15	83	16	54	15	4	4	75	1.14
45680363--45680898	47	11.3	47	90	3	767	27	30	9	33	1.89
45680384--45680897	190	2.7	190	94	1	899	27	30	10	32	1.89
45684387--45684694	40	7.7	40	90	0	456	26	28	21	23	1.99
45684748--45684822	38	2.0	38	84	5	98	25	26	17	30	1.97
45687227--45687762	47	11.3	47	91	3	785	26	30	9	33	1.89
45687248--45687761	190	2.7	190	95	1	917	26	30	10	32	1.90
45692637--45692833	50	3.9	50	86	1	252	27	26	19	26	1.99
45692652--45692833	101	1.8	99	89	2	283	28	26	19	25	1.99
45698257--45698343	43	2.0	43	93	0	147	25	27	20	26	1.99
45703943--45704029	42	2.1	42	86	0	120	24	32	19	24	1.98
45720821--45720946	43	3.0	42	76	5	137	34	23	15	26	1.94
45721988--45722069	39	2.0	41	83	4	105	37	20	17	24	1.93
45722844--45722875	16	2.0	16	93	0	55	21	0	40	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45722691--45723251	287	2.0	285	79	7	609	27	3	23	45	1.69
45723498--45723534	13	2.7	14	91	8	67	43	0	5	51	1.24
45726538--45726577	19	2.1	19	100	0	80	42	17	5	35	1.71
45727575--45727606	11	2.9	11	95	0	55	40	0	0	59	0.97
45727693--45727727	13	2.6	13	90	4	52	51	8	2	37	1.47
45727725--45727848	9	14.0	9	68	11	51	45	17	2	34	1.62
45727756--45727829	36	2.1	36	89	0	112	45	16	2	35	1.61
45732958--45732986	14	2.1	14	93	6	51	34	0	6	58	1.25
45733807--45733954	43	3.4	43	90	3	235	24	25	18	31	1.97
45737747--45737865	48	2.5	48	86	1	159	31	23	14	31	1.94
45744154--45744238	27	3.2	26	80	5	80	17	23	22	36	1.95
45752005--45752109	27	3.9	26	81	9	104	18	24	20	36	1.95
45752005--45752114	54	2.0	54	84	3	141	17	24	20	37	1.94
45755751--45755781	16	1.9	16	93	0	53	35	16	6	41	1.74
45755949--45756088	56	2.5	55	86	6	165	34	22	14	28	1.93
45755968--45756088	56	2.2	56	92	0	197	35	23	13	27	1.92
45772321--45772450	47	2.8	47	83	0	152	24	15	28	31	1.95
45785794--45785870	29	2.6	28	86	10	102	27	15	28	28	1.96
45785823--45786498	174	3.9	174	98	0	1271	30	14	24	31	1.94
45800125--45800154	14	2.1	15	93	6	53	20	3	0	76	0.92
45803356--45803433	22	3.5	20	75	17	59	69	2	5	23	1.21
45812145--45812428	48	5.9	48	79	1	255	23	28	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45812145--45812412	96	2.8	96	82	2	295	23	28	20	28	1.99
45816540--45816605	27	2.4	27	80	7	80	39	24	21	15	1.91
45816540--45816627	29	3.2	27	81	9	88	37	22	22	17	1.94
45816552--45816654	28	3.6	28	78	8	93	34	21	22	21	1.96
45818078--45818124	24	2.0	24	91	0	76	23	38	2	36	1.67
45822879--45823101	79	2.8	78	82	9	265	24	27	22	25	2.00
45822879--45823101	39	5.7	40	86	8	266	24	27	22	25	2.00
45850507--45850647	47	2.9	48	82	3	176	26	26	19	26	1.99
45862499--45862543	6	7.5	6	94	0	81	0	66	0	33	0.92
45865527--45865590	19	3.3	19	97	2	119	48	10	10	29	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295