genome.fa.s7.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  219  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69816236--69816290	24	2.3	25	81	6	60	40	20	21	18	1.92
69821789--69822112	99	3.3	99	92	1	488	29	27	17	25	1.98
69821789--69822112	49	6.5	49	86	2	414	29	27	17	25	1.98
69826376--69826420	22	2.0	22	91	0	72	35	26	20	17	1.95
69830176--69830214	20	2.0	20	100	0	78	35	12	20	30	1.90
69830266--69830367	23	4.3	23	92	3	168	26	20	22	30	1.98
69830579--69830638	31	1.9	31	93	0	102	36	16	21	25	1.94
69850167--69850247	23	3.6	22	77	14	67	37	17	20	24	1.94
69850214--69850278	23	2.8	23	79	9	78	40	20	20	20	1.92
69859148--69859208	21	2.9	21	85	4	79	34	22	11	31	1.90
69859245--69859294	25	2.0	25	92	0	82	30	14	22	34	1.93
69866504--69866550	24	2.0	24	83	8	60	27	23	19	29	1.98
69866606--69866658	11	5.0	11	75	9	56	32	22	13	32	1.92
69866598--69866658	21	2.9	21	87	4	88	34	21	11	32	1.89
69866695--69866743	25	2.0	25	83	0	62	28	12	20	38	1.89
69877792--69877826	8	4.4	8	100	0	70	40	37	0	22	1.55
69878276--69878304	12	2.3	13	94	5	51	27	20	0	51	1.47
69881388--69881413	13	2.0	13	100	0	52	53	0	0	46	1.00
69882189--69882464	39	7.1	39	91	0	444	23	28	25	21	1.99
69889394--69889618	40	5.7	40	87	5	287	25	27	22	24	2.00
69889394--69889618	119	1.9	120	84	6	305	25	27	22	24	2.00
69921974--69922051	29	2.7	28	84	11	104	25	15	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69922004--69922331	174	1.9	174	96	0	611	30	14	24	30	1.95
69927409--69927465	15	3.9	15	88	2	89	35	0	12	52	1.39
69927851--69927898	21	2.2	21	85	7	60	16	27	22	33	1.96
69927860--69927909	21	2.4	21	89	0	73	16	28	26	30	1.96
69927839--69927921	21	3.9	21	75	3	58	16	21	24	37	1.94
69929440--69929469	16	1.9	15	93	6	51	43	0	23	33	1.54
69963611--69963828	119	1.8	120	82	8	284	25	27	21	25	1.99
69963592--69963835	40	6.1	40	82	8	275	25	27	22	25	2.00
69968998--69969065	29	2.3	29	82	5	84	27	29	13	29	1.94
69969172--69969239	29	2.3	29	85	5	93	27	30	13	27	1.94
69969341--69969419	29	2.7	30	82	13	110	29	30	15	25	1.96
69968887--69969388	174	2.9	174	96	0	941	31	24	14	29	1.94
69971177--69971630	230	2.0	230	94	0	793	30	15	22	31	1.95
69974435--69974471	17	2.1	19	85	10	51	51	2	2	43	1.30
69974437--69974480	19	2.4	18	81	7	54	50	2	2	45	1.27
69982441--69982566	46	2.7	46	88	2	173	30	16	28	23	1.96
69982634--69982813	49	3.7	49	77	6	161	28	22	25	23	1.99
70002003--70002047	22	2.2	20	88	8	63	35	6	17	40	1.76
70002646--70002684	18	2.1	18	85	4	51	25	2	20	51	1.60
70003307--70003518	43	5.0	43	83	5	270	25	12	26	34	1.92
70007393--70007451	26	2.2	27	82	8	68	71	0	5	23	1.06
70007432--70007461	14	2.1	14	93	0	51	76	3	3	16	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70009079--70009117	18	2.1	18	90	4	60	43	0	53	2	1.14
70016719--70016777	28	2.1	28	100	0	118	49	10	10	30	1.70
70019585--70019660	35	2.1	36	95	4	136	36	21	17	25	1.94
70021752--70021819	29	2.3	29	82	5	84	27	29	13	29	1.94
70021641--70022782	174	6.6	174	98	0	2178	31	24	14	29	1.94
70021928--70021993	29	2.3	29	89	5	98	30	30	10	28	1.90
70022273--70022340	29	2.3	29	82	5	84	27	29	13	29	1.94
70021641--70022782	523	2.2	522	98	0	2178	31	24	14	29	1.94
70022623--70022690	29	2.3	29	82	5	84	27	29	13	29	1.94
70022768--70022842	29	2.6	30	79	12	93	28	29	16	26	1.96
70030063--70030130	29	2.3	29	82	5	84	27	29	13	29	1.94
70029952--70030570	174	3.6	174	97	0	1175	31	24	14	30	1.94
70030237--70030304	29	2.3	29	85	5	93	27	30	13	27	1.94
70030411--70030478	29	2.3	29	82	5	84	27	29	13	29	1.94
70030554--70030624	29	2.4	29	76	4	81	26	29	14	29	1.95
70030237--70031121	320	2.7	319	90	6	1326	30	25	14	29	1.95
70030411--70030716	146	2.1	146	98	0	594	30	24	14	30	1.95
70030906--70030973	29	2.3	29	82	5	84	27	29	13	29	1.94
70030557--70031121	173	3.2	173	97	1	1058	30	25	14	29	1.95
70030063--70031064	494	2.0	494	98	1	1920	30	25	14	29	1.95
70031074--70031152	29	2.7	30	76	13	92	29	30	15	25	1.96
70036187--70036355	24	7.0	24	88	2	232	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70050206--70050797	47	12.6	47	92	0	950	29	28	8	33	1.87
70056366--70056536	43	4.0	43	76	8	159	25	16	25	33	1.96
70056370--70056474	44	2.4	43	78	7	106	24	17	23	34	1.96
70086003--70086035	16	2.1	17	88	11	52	30	6	6	57	1.47
70086350--70086462	42	2.7	42	73	6	120	26	19	26	27	1.99
70092501--70092683	56	3.3	55	85	6	235	25	13	28	32	1.94
70092526--70092706	28	6.5	28	94	1	276	26	13	28	31	1.94
70100717--70100869	28	5.5	28	91	1	229	25	13	29	31	1.94
70100717--70100869	83	1.8	83	88	2	236	25	13	29	31	1.94
70115719--70115896	27	6.6	27	83	3	205	26	15	28	29	1.96
70115720--70115875	82	1.9	81	88	3	233	26	15	28	29	1.96
70115716--70115896	82	2.2	81	83	2	229	27	15	27	29	1.96
70118443--70118490	25	1.9	25	86	0	69	33	25	16	25	1.96
70118526--70118572	20	2.3	20	92	0	76	31	12	21	34	1.91
70118621--70118741	24	5.0	24	87	7	165	28	20	22	28	1.99
70118621--70118750	49	2.7	47	85	8	163	31	19	22	26	1.97
70118935--70118995	31	2.0	31	86	0	86	31	14	27	26	1.95
70127070--70127206	60	2.3	59	82	8	152	24	25	21	28	1.99
70127199--70127244	20	2.3	20	82	14	60	28	28	17	26	1.98
70129613--70129649	19	2.0	19	89	5	58	21	2	10	64	1.37
70142332--70142446	27	4.3	26	84	3	140	38	23	22	15	1.92
70143845--70143944	24	4.2	24	92	0	146	25	41	2	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70148725--70148805	23	3.4	23	84	6	92	24	24	22	28	1.99
70148712--70148823	23	4.7	23	77	13	86	28	24	19	27	1.99
70148949--70148992	20	2.2	20	95	0	79	27	4	22	45	1.72
70155898--70156015	46	2.5	47	82	11	145	23	25	20	30	1.98
70158583--70158692	42	2.6	42	81	2	132	29	25	16	29	1.97
70161688--70161869	28	6.5	28	90	1	267	32	26	12	28	1.93
70166314--70166484	46	3.7	45	77	9	164	26	28	15	29	1.96
70166270--70166484	94	2.3	94	79	4	211	25	27	17	29	1.98
70166361--70166484	48	2.7	46	83	7	153	27	26	15	30	1.96
70168805--70168918	45	2.6	44	81	8	126	29	28	18	23	1.98
70174605--70174811	27	7.6	27	91	3	315	26	14	28	30	1.95
70174605--70174811	55	3.8	55	96	0	360	26	14	28	30	1.95
70180808--70180887	39	2.1	39	100	0	160	45	17	2	35	1.62
70184849--70184887	21	1.9	20	89	5	60	46	20	0	33	1.51
70185266--70185300	17	2.1	17	89	5	54	51	17	5	25	1.67
70189660--70189785	47	2.6	47	86	7	171	23	19	28	28	1.98
70192168--70192285	41	2.9	40	77	8	123	33	28	13	24	1.93
70195565--70195737	48	3.6	48	85	4	199	35	27	17	19	1.95
70196346--70196381	17	2.1	17	94	0	63	33	2	11	52	1.51
70198254--70198319	21	3.1	21	93	0	114	33	37	18	10	1.85
70205326--70205368	19	2.3	19	84	4	61	46	4	4	44	1.45
70207876--70207913	19	2.0	19	85	10	51	21	21	36	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70208131--70208315	27	7.0	27	77	3	160	39	19	9	31	1.84
70208131--70208299	53	3.2	53	81	9	175	40	17	9	31	1.82
70208133--70208285	80	1.9	80	83	2	200	41	16	9	32	1.80
70208297--70208399	27	3.8	27	86	0	161	33	23	19	23	1.97
70208545--70208628	27	3.2	27	77	14	77	25	21	19	34	1.96
70208577--70208644	26	2.6	27	80	4	75	22	22	22	33	1.97
70208813--70208904	33	2.8	33	86	1	123	26	21	26	26	2.00
70213639--70213819	27	6.7	26	78	5	146	40	19	10	29	1.85
70213639--70213819	54	3.4	53	80	11	181	40	19	10	29	1.85
70213639--70213831	81	2.4	80	85	2	260	39	20	10	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295