genome.fa.s7.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  140  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43134139--43134185	22	2.1	22	100	0	94	36	23	4	36	1.75
43136913--43136978	27	2.4	27	75	9	62	21	24	31	22	1.98
43138816--43138855	20	2.0	20	90	0	62	55	2	5	37	1.35
43140366--43140473	28	3.8	29	82	2	123	28	30	13	26	1.94
43144294--43144471	27	6.6	27	84	3	205	29	28	15	26	1.96
43144315--43144470	82	1.9	81	88	3	233	29	28	15	26	1.96
43152230--43152407	27	6.6	27	79	3	151	27	29	15	27	1.96
43152256--43152406	82	1.9	81	85	4	214	27	29	16	27	1.97
43160210--43160386	27	6.6	27	79	4	151	27	29	15	27	1.96
43160235--43160385	27	5.6	27	80	4	160	27	29	16	27	1.97
43160210--43160386	55	3.3	54	80	4	196	27	29	15	27	1.96
43160235--43160385	82	1.9	81	85	4	214	27	29	16	27	1.97
43168197--43168374	27	6.6	27	80	3	160	28	29	15	26	1.96
43168218--43168373	82	1.9	81	85	3	215	27	29	16	26	1.96
43176185--43176362	27	6.6	27	80	3	160	28	29	16	25	1.97
43176206--43176361	82	1.9	81	84	3	206	28	29	16	25	1.97
43217855--43218007	43	3.6	43	75	7	139	41	20	16	20	1.90
43219983--43220134	56	2.7	56	92	0	241	25	15	25	34	1.94
43219983--43220168	56	3.3	56	87	1	185	24	16	25	33	1.95
43224119--43224148	16	1.9	16	93	6	53	26	6	26	40	1.81
43228923--43228986	31	2.1	31	90	0	101	25	23	14	37	1.92
43229180--43229349	25	7.0	24	84	9	211	26	23	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43229407--43229463	9	5.9	9	73	15	51	35	21	8	35	1.84
43229395--43229465	20	3.5	20	94	0	124	32	21	11	35	1.89
43229400--43229454	11	5.4	11	70	16	55	30	20	12	36	1.90
43230711--43230789	27	2.9	27	88	3	115	21	26	22	29	1.99
43230939--43231133	81	2.4	81	86	2	250	31	8	21	38	1.84
43230828--43231119	27	10.8	27	75	6	162	32	10	18	38	1.85
43231112--43231295	27	6.8	27	86	2	217	37	8	25	29	1.84
43230939--43231160	81	2.8	81	83	4	209	33	8	20	37	1.83
43231112--43231295	54	3.4	54	84	3	244	37	8	25	29	1.84
43231301--43231390	27	3.3	27	85	3	119	32	11	16	40	1.84
43231284--43231390	54	2.0	54	81	7	128	30	11	19	38	1.87
43231301--43231405	27	3.9	27	78	9	90	34	10	16	39	1.83
43243612--43244037	213	2.0	213	99	0	843	41	22	8	26	1.83
43244037--43244079	20	2.2	20	100	0	86	20	30	9	39	1.84
43246656--43246690	18	1.9	18	88	11	54	48	5	0	45	1.26
43250450--43250478	6	4.8	6	100	0	58	17	31	0	51	1.45
43256235--43256300	33	2.0	33	96	0	123	24	19	12	43	1.85
43261546--43261940	197	2.0	197	96	0	727	35	9	17	37	1.82
43261943--43261981	16	2.4	17	91	4	62	43	0	0	56	0.99
43263734--43263809	20	3.8	20	70	13	57	17	26	15	40	1.89
43264058--43264155	47	2.1	47	100	0	196	35	10	16	37	1.82
43266889--43267003	55	2.1	56	83	8	146	34	21	24	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43266914--43267003	27	3.2	27	85	7	119	32	23	24	20	1.98
43267109--43267174	28	2.4	28	87	7	98	30	7	25	36	1.84
43272592--43272827	118	2.0	118	100	0	472	28	11	25	33	1.91
43273868--43274167	47	6.4	47	90	0	420	33	8	30	28	1.86
43276019--43276332	40	7.9	40	87	1	434	22	22	29	25	1.99
43281326--43281503	40	4.5	40	88	6	222	24	29	23	21	1.99
43289397--43289614	40	5.5	40	85	4	248	26	27	22	22	1.99
43291403--43291701	47	6.4	47	89	3	397	34	8	29	27	1.87
43296639--43296728	27	3.2	27	84	7	110	32	23	23	21	1.98
43296835--43296901	28	2.4	28	89	0	107	31	7	26	34	1.84
43299389--43299442	29	1.9	29	85	7	76	38	3	27	29	1.74
43301795--43303728	966	2.0	966	100	0	3868	30	9	23	36	1.86
43321665--43321779	29	4.0	29	83	6	128	26	28	15	28	1.96
43321659--43321766	29	3.8	29	84	6	130	25	29	16	27	1.97
43326814--43326849	18	1.9	19	88	5	56	13	36	27	22	1.92
43329421--43329522	29	3.6	29	84	4	109	27	30	14	27	1.95
43338877--43338925	25	2.0	25	83	0	62	32	14	12	40	1.83
43340130--43340172	19	2.3	19	80	8	52	34	2	18	44	1.63
43356023--43356164	45	3.2	45	82	7	130	32	30	20	16	1.94
43361445--43361546	45	2.3	45	81	8	118	32	25	20	21	1.98
43361520--43361675	43	3.6	43	93	0	249	33	32	23	10	1.90
43365900--43366083	40	4.6	39	80	9	194	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43365900--43366084	79	2.3	80	79	8	198	26	27	21	24	1.99
43375442--43375696	55	4.8	53	78	9	220	36	17	24	21	1.95
43375449--43375649	108	1.8	110	87	6	302	34	17	24	22	1.96
43378274--43378315	13	3.2	13	100	0	84	30	30	23	14	1.94
43380194--43380270	38	2.0	38	89	0	118	28	12	25	32	1.93
43388787--43388834	25	1.9	25	91	0	78	35	20	14	29	1.93
43388862--43388936	20	3.9	19	84	10	91	37	10	18	33	1.86
43388986--43389115	52	2.6	51	95	3	228	26	22	23	27	2.00
43388986--43389115	26	5.1	26	88	1	194	26	22	23	27	2.00
43394757--43394820	5	12.6	5	81	15	78	78	1	0	20	0.84
43394762--43394809	13	3.9	13	92	7	75	79	0	0	20	0.74
43394751--43394817	30	2.3	29	92	2	107	76	1	0	22	0.87
43412899--43412944	21	2.2	21	100	0	92	30	4	10	54	1.55
43414929--43414989	23	2.6	22	75	12	59	39	6	1	52	1.37
43416668--43416718	20	2.5	20	87	6	68	49	5	7	37	1.56
43422479--43422511	17	2.0	16	94	5	57	63	0	0	36	0.95
43426494--43426591	49	2.0	49	88	4	144	24	23	14	37	1.92
43430086--43430336	80	3.2	80	94	0	423	23	21	28	26	1.99
43430085--43430336	40	6.3	40	81	0	308	24	21	28	26	1.99
43433012--43433197	40	4.7	40	94	2	295	24	20	25	29	1.99
43433011--43433256	40	6.2	40	89	3	291	23	20	26	29	1.99
43437719--43437816	49	2.0	49	89	0	151	24	21	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43438078--43438110	17	2.0	17	94	5	59	63	0	0	36	0.95
43438754--43438792	12	3.2	12	81	3	51	84	0	15	0	0.62
43439250--43439291	17	2.6	16	82	10	50	30	9	14	45	1.77
43439503--43439565	2	31.5	2	100	0	126	50	49	0	0	1.00
43440210--43440273	20	3.0	21	71	15	60	26	18	35	18	1.94
43440965--43441008	17	2.8	16	86	6	63	79	0	0	20	0.73
43443573--43443616	13	3.1	14	81	12	54	47	2	6	43	1.42
43448307--43448481	46	3.8	46	74	13	169	21	20	28	30	1.98
43451424--43451492	15	4.6	15	79	0	75	13	17	11	57	1.64
43451415--43451502	30	3.0	30	78	8	90	11	17	14	56	1.66
43451424--43451503	15	5.4	14	77	4	61	11	17	12	58	1.62
43467807--43467857	25	2.0	25	84	0	66	35	11	13	39	1.82
43473431--43473600	47	3.7	47	72	14	158	28	20	30	21	1.98
43479554--43479614	30	2.0	30	83	0	77	31	24	6	37	1.81
43484105--43484225	47	2.6	47	82	8	140	27	19	30	23	1.98
43484202--43484318	46	2.5	46	84	6	148	29	17	28	24	1.97
43484153--43484373	47	4.7	47	77	14	160	28	19	28	23	1.98
43485249--43485425	83	2.1	83	100	0	354	22	20	31	26	1.98
43485911--43485979	6	11.0	6	84	9	93	15	1	4	78	0.98
43490425--43490610	93	2.0	93	98	0	363	36	5	24	33	1.80
43492306--43492483	27	6.6	27	77	6	137	30	28	15	25	1.96
43492306--43492483	54	3.3	54	78	7	164	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43500310--43500487	27	6.6	27	77	6	137	30	28	15	25	1.96
43500310--43500487	54	3.3	54	78	7	164	30	28	15	25	1.96
43505482--43505529	17	2.8	17	74	0	51	77	4	10	8	1.12
43511726--43511761	16	2.2	16	100	0	72	27	27	19	25	1.99
43515267--43515306	20	2.0	20	100	0	80	20	10	15	55	1.68
43519000--43519040	20	2.2	20	86	8	59	51	0	24	24	1.49
43520311--43520423	6	18.3	6	69	18	72	20	18	12	48	1.80
43520311--43520402	25	3.7	25	91	0	139	20	19	11	47	1.81
43522484--43522678	27	7.2	27	87	2	266	34	16	19	28	1.94
43523067--43523126	22	2.7	22	82	5	68	21	25	21	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295