genome.fa.s7.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  169  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53593555--53593776	27	8.3	27	87	0	293	24	20	19	36	1.95
53593559--53593776	81	2.7	81	89	1	323	24	20	18	36	1.95
53593812--53594262	27	16.7	27	82	2	449	31	9	21	38	1.85
53593897--53594262	54	6.8	54	90	1	538	31	8	21	38	1.83
53596239--53596437	6	32.3	6	72	16	149	48	13	18	19	1.80
53596248--53596437	43	4.4	43	78	11	172	48	13	18	18	1.80
53596266--53596374	25	4.6	25	74	19	117	49	12	19	18	1.79
53596266--53596437	62	2.7	62	90	5	254	48	13	19	18	1.81
53596358--53596437	25	3.2	25	87	5	110	47	15	18	18	1.83
53596299--53596409	19	5.6	19	73	20	95	47	14	18	18	1.82
53596583--53596724	67	2.1	67	85	5	185	30	21	28	19	1.97
53596654--53596705	27	2.0	26	84	3	68	34	21	26	17	1.95
53596950--53597171	27	8.3	27	87	0	293	24	20	19	36	1.95
53596954--53597171	81	2.7	81	89	1	323	24	20	18	36	1.95
53597207--53597657	27	16.7	27	82	2	449	31	9	21	38	1.85
53597292--53597657	54	6.8	54	90	1	538	31	8	21	38	1.83
53599634--53599832	6	32.3	6	71	16	140	49	13	18	19	1.80
53599643--53599832	43	4.4	43	77	11	145	49	13	18	18	1.79
53599706--53599769	25	2.6	25	87	0	92	50	12	17	20	1.78
53599694--53599832	62	2.2	62	93	0	251	48	14	17	19	1.81
53599753--53599832	25	3.2	25	87	5	110	47	15	18	18	1.83
53599734--53599804	19	3.8	19	80	10	92	46	15	19	18	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53599978--53600119	67	2.1	67	85	5	185	30	21	28	19	1.97
53600049--53600100	27	2.0	26	84	3	68	34	21	26	17	1.95
53600345--53600566	27	8.3	27	87	0	293	24	20	19	36	1.95
53600349--53600566	81	2.7	81	89	1	323	24	20	18	36	1.95
53600602--53601105	27	18.7	27	82	3	523	31	8	21	38	1.84
53600659--53601105	27	16.6	27	83	3	551	31	8	21	38	1.84
53600687--53601105	54	7.8	54	91	1	626	31	8	21	38	1.83
53613402--53613903	47	10.6	47	90	2	772	32	8	28	29	1.87
53613402--53613903	96	5.3	96	93	1	811	32	8	28	29	1.87
53614022--53614123	37	2.8	37	93	0	168	25	18	29	26	1.98
53615411--53615619	40	5.2	40	88	2	276	25	20	27	27	1.99
53615411--53615643	80	2.9	79	84	3	286	24	19	27	27	1.99
53619682--53620228	47	11.6	47	89	4	834	33	8	28	29	1.86
53619682--53620228	96	5.8	94	90	5	807	33	8	28	29	1.86
53620347--53620448	37	2.8	37	89	0	150	27	17	28	26	1.98
53622574--53622620	19	2.5	19	76	10	51	21	2	4	72	1.12
53622879--53622990	40	2.7	43	79	8	131	23	16	25	34	1.95
53631572--53631731	27	6.0	27	72	7	110	29	21	17	31	1.96
53649238--53649516	96	2.9	94	83	5	328	21	27	21	29	1.98
53649241--53649525	48	5.9	48	77	1	275	22	28	20	28	1.98
53653000--53653468	40	11.7	40	97	0	839	30	20	27	21	1.98
53661836--53662299	40	11.7	40	95	2	803	30	20	27	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53666171--53666430	41	6.3	41	88	3	346	36	25	18	20	1.95
53673147--53673206	27	2.3	26	85	2	75	33	20	23	23	1.97
53673854--53673966	54	2.1	54	80	3	120	27	19	22	30	1.98
53673869--53674010	54	2.6	54	83	1	169	26	19	17	37	1.93
53673868--53674010	27	5.3	27	84	0	151	26	18	17	37	1.93
53675341--53675376	15	2.5	14	86	8	54	66	0	11	22	1.22
53676621--53676688	23	2.9	24	88	4	111	19	13	30	36	1.90
53676650--53676702	24	2.2	24	86	0	70	20	11	28	39	1.87
53683682--53683934	27	9.4	27	85	0	292	27	19	17	35	1.94
53688504--53688756	68	3.8	64	75	9	190	30	16	28	24	1.96
53691745--53691793	18	2.7	19	81	6	57	65	0	0	34	0.93
53705220--53705455	48	4.9	48	76	9	230	22	30	16	29	1.96
53705335--53705412	25	3.2	25	66	20	74	26	26	14	32	1.94
53706850--53706923	25	2.9	26	81	4	105	36	17	22	22	1.95
53715175--53715352	27	6.6	27	81	5	162	28	28	16	26	1.97
53715196--53715351	82	1.9	81	85	3	215	27	28	17	26	1.97
53723219--53723396	27	6.6	27	81	5	171	28	28	16	26	1.97
53723240--53723395	82	1.9	81	86	3	224	28	28	16	26	1.97
53728347--53728389	18	2.4	18	88	0	68	46	11	16	25	1.80
53728723--53728871	26	5.5	26	73	17	99	40	16	14	28	1.87
53728775--53728873	27	3.7	27	86	4	130	40	17	16	26	1.90
53736444--53736469	13	2.0	13	100	0	52	53	15	0	30	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53737269--53737306	13	2.9	13	96	0	67	15	42	31	10	1.81
53737295--53737407	49	2.3	48	80	10	124	22	16	31	29	1.96
53745539--53745564	13	2.0	13	100	0	52	53	15	0	30	1.42
53747842--53747900	26	2.2	27	84	3	75	28	13	15	42	1.85
53747856--53748030	27	6.6	27	73	12	130	32	8	20	40	1.81
53747854--53748023	53	3.2	53	77	9	159	31	7	20	40	1.81
53747882--53748030	54	2.8	53	78	9	149	32	7	20	39	1.80
53751191--53751316	39	3.2	39	93	0	198	22	20	29	27	1.98
53751191--53751350	78	2.1	78	80	4	180	23	21	28	27	1.99
53753175--53753241	24	2.8	24	73	8	64	28	32	2	35	1.72
53756958--53756988	15	2.1	15	100	0	62	35	0	25	38	1.56
53757196--53757357	40	4.1	40	84	7	204	23	22	29	24	1.99
53757196--53757349	80	1.9	80	91	0	254	24	22	27	25	2.00
53758748--53758794	21	2.4	19	82	10	58	29	2	21	46	1.63
53764184--53764365	40	4.6	40	93	2	305	25	26	23	24	2.00
53766464--53766507	23	2.0	22	86	4	61	54	20	0	25	1.45
53780570--53780607	19	2.0	19	100	0	76	10	10	36	42	1.74
53784328--53784407	41	2.0	41	92	0	133	46	13	17	22	1.83
53784583--53784616	13	2.6	13	95	0	59	32	20	0	47	1.51
53784978--53785011	13	2.6	13	100	0	68	35	47	17	0	1.48
53786851--53786941	24	3.7	24	83	2	101	27	21	17	32	1.96
53786875--53786967	48	2.0	47	85	6	125	25	22	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53786851--53786964	24	4.7	24	80	5	97	27	22	17	32	1.96
53796263--53796304	21	2.0	21	85	0	57	21	16	40	21	1.91
53799595--53799767	27	6.4	27	80	0	175	35	20	19	24	1.95
53799595--53799767	54	3.2	54	86	1	222	35	20	19	24	1.95
53806679--53806805	38	3.3	39	82	5	134	25	20	29	25	1.99
53809512--53809783	47	5.7	47	90	2	375	32	8	30	28	1.86
53809901--53809978	37	2.1	37	88	2	113	24	17	32	25	1.97
53811822--53812010	43	4.4	43	100	0	378	22	14	35	26	1.93
53811992--53812065	29	2.6	29	89	4	105	25	16	32	25	1.96
53812377--53812505	40	3.2	40	79	9	122	27	22	26	24	2.00
53812455--53812570	40	2.9	40	81	1	144	25	23	26	24	2.00
53816364--53816682	47	6.7	47	92	2	478	32	8	30	28	1.87
53816801--53816879	37	2.1	37	90	0	122	24	18	31	25	1.98
53822709--53822890	28	6.5	28	91	1	276	28	12	25	34	1.92
53825292--53825464	27	6.4	27	84	1	222	34	18	21	24	1.96
53826141--53826200	27	2.3	27	79	2	68	25	20	18	36	1.94
53828230--53828379	55	2.8	54	80	4	149	26	15	29	28	1.96
53828202--53828379	27	6.6	27	77	6	146	25	15	28	30	1.96
53828203--53828358	82	1.9	81	81	6	190	25	16	28	30	1.96
53845509--53845658	55	2.8	54	80	4	149	26	15	29	28	1.96
53845481--53845658	27	6.6	27	77	6	146	25	15	28	30	1.96
53845482--53845637	82	1.9	81	81	6	190	25	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53859784--53859894	27	4.2	26	84	8	134	36	24	23	16	1.94
53859784--53859894	54	2.1	53	86	5	152	36	24	23	16	1.94
53860000--53860062	26	2.3	26	83	5	72	31	11	23	33	1.90
53866486--53866523	19	2.0	19	94	0	67	23	10	23	42	1.85
53876746--53877047	148	2.0	148	98	0	577	35	24	12	27	1.92
53877183--53877311	46	2.8	46	80	1	132	31	23	22	22	1.98
53881083--53881125	17	2.5	17	88	0	59	25	0	32	41	1.56
53885718--53885784	33	2.0	33	82	5	82	26	26	19	26	1.99
53887960--53888080	43	2.8	44	80	10	126	25	17	28	28	1.97
53887986--53888114	43	3.0	43	85	1	152	26	18	29	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295