genome.fa.s7.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  130  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39777414--39777501	16	5.8	16	67	15	53	59	2	2	36	1.23
39779611--39779656	23	2.0	23	83	4	58	43	2	0	54	1.12
39780357--39780410	27	2.0	27	100	0	108	22	11	11	55	1.66
39780482--39780529	22	2.1	23	88	7	71	52	0	4	43	1.20
39783079--39783409	48	6.9	48	76	6	269	22	30	19	27	1.98
39783079--39783410	144	2.3	143	83	4	400	22	30	19	27	1.98
39793900--39794034	7	18.3	7	86	3	126	49	34	0	16	1.46
39793954--39794033	8	10.2	8	83	5	101	53	31	0	15	1.42
39795806--39796092	137	2.1	137	96	0	520	31	24	19	24	1.98
39797880--39797963	26	3.2	26	96	0	150	35	25	5	33	1.80
39799360--39799532	43	4.0	43	77	8	190	32	25	17	24	1.97
39799360--39799522	86	1.9	85	83	8	215	31	25	17	25	1.97
39805888--39805930	23	1.9	22	85	4	59	48	27	4	18	1.68
39807555--39807723	42	4.0	43	80	6	191	33	23	17	25	1.96
39807560--39807715	86	1.8	84	83	5	206	32	23	17	26	1.97
39821543--39821664	46	2.7	45	84	7	149	25	29	17	27	1.97
39824861--39825079	38	5.6	40	82	7	252	24	22	26	26	2.00
39824861--39825079	40	5.5	41	80	14	189	24	22	26	26	2.00
39828367--39828703	45	7.6	44	88	4	412	24	18	27	29	1.98
39831499--39831585	25	3.5	25	71	6	86	22	20	19	36	1.95
39831565--39831630	24	2.7	24	78	2	78	31	22	21	24	1.98
39832454--39832493	20	2.0	20	90	0	62	32	17	30	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39833108--39833141	17	2.0	17	100	0	68	11	35	29	23	1.90
39838766--39838957	40	4.8	40	91	1	305	23	23	29	22	1.99
39840400--39840430	16	1.9	16	93	0	53	35	22	0	41	1.54
39840397--39840436	20	2.0	20	85	0	53	37	22	0	40	1.54
39840621--39840875	55	4.8	55	79	8	246	21	25	17	35	1.95
39863697--39863725	1	29.0	1	100	0	58	0	0	0	100	0.00
39872464--39872585	46	2.7	45	84	7	149	25	29	17	27	1.97
39875789--39876012	40	5.6	40	83	3	261	25	23	25	25	2.00
39879401--39879751	45	7.9	45	88	3	442	24	18	27	28	1.98
39882540--39882626	25	3.5	25	71	6	86	22	20	19	36	1.95
39882606--39882671	24	2.7	24	78	2	78	31	22	21	24	1.98
39883496--39883535	20	2.0	20	90	0	62	32	17	30	20	1.95
39884150--39884183	17	2.0	17	100	0	68	11	35	29	23	1.90
39889847--39890038	40	4.8	40	90	1	296	23	23	28	24	1.99
39897869--39898060	40	4.8	40	91	1	305	23	23	29	22	1.99
39900615--39900837	40	5.6	40	81	7	256	24	22	26	26	2.00
39915917--39915943	12	2.2	12	100	0	54	37	25	18	18	1.94
39921370--39921443	21	3.5	21	73	0	67	17	17	17	47	1.83
39921367--39921487	42	2.9	42	81	2	109	19	22	16	42	1.89
39921435--39921492	21	2.8	21	76	5	55	20	29	12	37	1.89
39923689--39924044	177	2.0	177	97	0	667	41	14	14	30	1.86
39925242--39925292	21	2.4	21	100	0	102	19	25	39	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39926481--39926655	48	3.6	48	80	6	194	24	26	21	26	1.99
39926481--39926714	96	2.4	96	83	6	278	25	27	19	27	1.99
39926531--39926701	48	3.6	47	80	12	188	25	26	18	29	1.98
39927076--39927132	25	2.3	25	93	0	96	24	22	15	36	1.94
39930890--39930962	37	2.0	37	97	0	137	12	8	12	67	1.43
39933502--39933717	43	5.0	43	86	3	256	28	25	17	28	1.98
39935279--39935356	34	2.3	33	84	2	93	33	8	15	42	1.78
39938408--39938478	37	1.9	37	100	0	142	45	8	5	40	1.58
39950314--39950362	3	16.3	3	100	0	98	67	0	0	32	0.91
39950502--39950542	15	2.7	15	92	0	64	65	0	2	31	1.05
39953759--39953847	39	2.3	39	96	3	164	66	4	10	19	1.38
39955551--39955595	24	1.9	23	86	13	65	13	28	4	53	1.59
39963798--39963939	41	3.5	41	95	0	248	19	20	23	36	1.95
39965718--39965896	27	6.6	27	82	5	173	29	27	15	27	1.96
39966442--39966466	13	1.9	13	100	0	50	32	16	20	32	1.94
39980139--39980189	21	2.4	21	86	0	66	17	31	35	15	1.92
39981669--39981698	14	2.1	14	93	0	51	46	36	0	16	1.47
39982085--39982110	12	2.2	12	100	0	52	7	15	30	46	1.74
39982165--39982383	41	5.4	41	87	1	298	37	25	20	16	1.93
39982416--39982463	23	2.1	22	84	3	60	52	29	0	18	1.46
39982438--39982478	15	2.6	16	84	3	57	56	26	0	17	1.41
39983258--39983349	8	12.9	7	90	10	102	71	1	0	27	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39983270--39983347	25	3.1	25	79	18	83	73	1	0	25	0.91
39983253--39983305	6	8.5	6	91	4	70	71	1	0	26	0.96
39983443--39983529	20	4.6	20	70	18	78	71	2	4	21	1.16
39983440--39983536	29	3.4	29	70	8	101	72	2	5	20	1.15
39983437--39983546	55	2.0	56	92	3	188	71	2	4	20	1.16
39987336--39987376	19	2.2	19	86	4	57	21	2	4	70	1.18
40002143--40002273	39	3.3	39	94	1	217	25	28	21	25	1.99
40002143--40002326	78	2.3	78	83	8	212	25	27	21	25	1.99
40017026--40017171	40	3.7	40	83	7	172	23	22	28	26	1.99
40017026--40017204	80	2.2	80	80	8	188	25	21	27	25	2.00
40017886--40017964	9	8.8	9	95	0	131	36	30	8	24	1.86
40020164--40020202	17	2.3	17	90	0	60	48	35	7	7	1.61
40027076--40027109	17	1.9	18	94	5	61	64	0	5	29	1.17
40027869--40027928	30	2.0	31	83	9	79	50	10	6	33	1.62
40032389--40032427	21	2.0	21	85	10	55	46	20	12	20	1.83
40032398--40032437	21	1.9	21	85	10	55	45	22	15	17	1.85
40033960--40033987	7	4.0	7	100	0	56	28	14	0	57	1.38
40033974--40034037	31	2.1	31	87	0	92	26	23	14	35	1.93
40034245--40034394	24	6.4	24	87	5	200	27	23	20	28	1.99
40034252--40034393	47	3.1	46	85	5	180	28	22	21	28	1.99
40034239--40034394	71	2.2	69	86	4	224	26	23	21	28	1.99
40034444--40034510	20	3.3	20	89	0	107	32	20	13	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40034547--40034594	25	1.9	25	91	0	78	25	14	25	35	1.94
40038204--40038235	16	1.9	17	93	6	57	62	0	6	31	1.20
40041919--40042134	40	5.4	39	90	3	276	25	27	22	24	2.00
40046408--40046442	16	2.2	16	100	0	70	31	17	25	25	1.97
40050129--40050307	27	6.6	27	79	8	166	26	14	29	30	1.95
40050126--40050307	82	2.2	81	83	3	240	26	14	28	30	1.95
40063657--40063911	55	4.8	54	81	9	269	35	17	25	21	1.95
40063667--40063913	108	2.3	110	83	9	325	35	17	25	22	1.95
40064103--40064133	16	1.9	16	93	0	53	41	0	22	35	1.54
40065355--40065611	55	4.8	54	76	11	210	34	17	25	22	1.96
40065801--40065831	16	1.9	16	93	0	53	41	0	22	35	1.54
40077802--40078056	55	4.8	54	77	9	242	35	17	25	21	1.95
40078248--40078278	16	1.9	16	93	0	53	41	0	22	35	1.54
40079731--40079926	40	4.9	41	84	10	271	22	28	23	25	1.99
40079731--40079922	80	2.4	80	93	1	323	22	29	23	23	1.99
40085587--40085620	17	2.0	17	100	0	68	23	29	35	11	1.90
40087113--40087192	25	3.2	25	81	0	97	37	18	20	23	1.94
40089943--40090349	45	9.1	45	88	2	554	29	28	18	24	1.98
40090029--40090102	25	3.2	25	61	18	59	28	28	18	24	1.98
40100259--40100479	40	5.6	40	87	6	290	22	22	28	26	1.99
40100259--40100479	80	2.8	79	90	2	320	22	22	28	26	1.99
40108445--40108665	40	5.6	40	87	6	290	22	23	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40108445--40108665	80	2.8	79	90	2	329	22	23	28	26	1.99
40111196--40111276	25	3.2	25	89	0	126	37	17	20	24	1.94
40111190--40111298	50	2.2	51	80	11	127	36	17	21	24	1.94
40119678--40119756	37	2.1	37	86	4	106	26	30	17	25	1.97
40119875--40120256	47	8.1	47	92	1	595	28	30	8	32	1.88
40119926--40120256	143	2.3	141	94	2	590	29	29	8	32	1.87
40130577--40130750	46	3.7	46	77	10	135	25	28	18	27	1.98
40139461--40139534	37	2.0	37	94	0	130	50	6	2	40	1.43
40141416--40141451	18	2.0	18	88	0	54	77	0	5	16	0.94
40149558--40149796	40	6.0	40	83	0	307	24	18	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295