genome.fa.s7.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  198  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63365136--63365272	60	2.3	60	81	6	143	26	21	25	26	2.00
63366142--63366214	35	2.1	35	97	0	137	17	24	27	30	1.97
63369792--63369830	19	2.1	19	85	0	51	43	20	17	17	1.88
63371430--63371462	16	2.1	15	94	5	57	66	0	3	30	1.06
63372858--63372904	23	2.0	23	100	0	94	25	12	8	53	1.67
63376000--63376175	50	3.5	49	80	7	176	28	27	18	26	1.98
63376000--63376186	101	1.9	99	84	4	250	27	28	18	25	1.98
63378314--63378369	15	3.7	15	77	17	71	62	12	14	10	1.55
63381396--63381571	50	3.5	49	82	7	185	30	26	17	25	1.97
63391030--63391061	13	2.4	14	94	5	57	53	9	0	37	1.34
63408683--63408708	12	2.2	12	100	0	52	30	26	7	34	1.85
63410454--63410478	7	3.6	7	100	0	50	40	16	12	32	1.84
63410536--63410838	9	34.6	9	77	7	257	36	0	15	47	1.50
63410522--63410854	80	4.1	80	81	7	381	37	0	14	47	1.49
63410723--63410819	24	3.9	24	77	7	104	39	0	12	48	1.41
63410765--63410828	33	1.9	33	93	0	110	39	0	12	48	1.41
63410958--63410998	19	2.2	19	90	0	64	60	0	0	39	0.96
63410958--63410995	10	3.9	10	86	6	60	57	0	0	42	0.98
63410999--63411037	16	2.4	16	86	0	60	66	0	0	33	0.92
63410987--63411028	22	1.9	22	85	9	59	69	0	0	30	0.89
63411537--63411582	23	2.0	23	95	0	83	41	13	2	43	1.55
63411724--63411754	2	15.5	2	100	0	62	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63412261--63412326	25	2.7	25	79	6	73	31	16	37	13	1.88
63412314--63412356	22	2.0	22	85	0	59	25	27	37	9	1.87
63412438--63412482	14	3.5	14	77	22	62	37	4	13	44	1.64
63412439--63412487	24	2.0	24	96	0	89	40	4	10	44	1.57
63416010--63416060	18	2.9	17	71	5	57	27	1	33	37	1.68
63417305--63417384	38	2.2	36	86	8	108	45	25	2	27	1.66
63417538--63417619	21	3.9	21	75	1	56	25	1	24	48	1.58
63417553--63417619	28	2.4	28	85	7	82	25	1	23	49	1.59
63417963--63418033	36	1.9	37	88	2	108	23	18	18	39	1.92
63419000--63419072	20	3.6	20	77	1	74	23	6	13	56	1.61
63421451--63421516	15	4.4	15	75	7	53	31	13	4	50	1.62
63422010--63422052	20	2.0	22	82	8	54	25	25	0	48	1.51
63422036--63422078	23	1.9	23	86	13	63	23	16	6	53	1.67
63422092--63422129	19	2.0	19	89	0	58	26	0	7	65	1.19
63423218--63423256	7	5.6	7	96	0	69	28	0	2	69	1.02
63423875--63423916	18	2.3	18	87	0	57	19	28	7	45	1.76
63426577--63426754	27	6.6	27	83	3	205	26	15	28	29	1.96
63426578--63426733	82	1.9	81	88	3	233	26	15	28	29	1.96
63426574--63426754	82	2.2	81	83	2	229	27	15	27	29	1.96
63430263--63430696	126	3.5	125	90	0	697	27	18	16	37	1.92
63430826--63430858	16	2.1	16	94	0	57	51	27	0	21	1.48
63430717--63431624	166	5.7	163	72	14	713	43	20	1	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63431007--63431301	142	2.1	142	94	1	511	43	19	2	35	1.63
63431136--63431207	24	3.0	24	76	13	85	51	29	0	19	1.47
63431146--63431674	166	3.3	158	91	5	857	45	21	1	31	1.61
63430843--63431674	300	2.7	307	88	6	1175	44	20	1	33	1.61
63431444--63431483	8	5.0	8	84	0	53	55	32	0	12	1.38
63431448--63431483	16	2.2	16	95	0	63	52	33	0	13	1.41
63431630--63431676	24	2.0	24	86	0	67	59	23	2	14	1.46
63431968--63432039	24	3.0	24	76	13	85	51	29	0	19	1.47
63431975--63432340	158	2.3	156	91	2	590	45	21	1	31	1.60
63431304--63432608	666	1.9	666	96	1	2416	43	20	7	28	1.78
63439007--63439098	46	2.0	46	95	0	166	40	7	11	40	1.71
63442529--63442610	27	3.0	27	94	0	137	32	7	18	41	1.78
63448579--63448603	12	2.1	12	100	0	50	60	16	8	16	1.58
63448775--63448940	89	1.9	89	96	0	305	33	19	12	35	1.88
63455055--63455239	79	2.3	81	82	7	218	24	22	27	25	2.00
63455056--63455239	40	4.6	40	80	9	198	25	22	27	25	2.00
63455108--63455262	79	2.0	79	82	7	190	26	20	27	25	1.99
63457474--63457817	166	2.1	166	99	0	679	20	31	24	23	1.98
63458486--63458804	48	6.8	46	72	15	194	23	28	19	28	1.98
63458507--63458804	141	2.1	139	81	9	356	24	28	18	28	1.98
63460360--63460403	19	2.4	19	85	7	56	50	0	9	40	1.34
63460498--63460526	15	1.9	15	100	0	58	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63462813--63462891	26	2.9	26	74	7	68	37	15	15	31	1.88
63464712--63464781	28	2.6	28	90	4	108	28	14	30	27	1.95
63475798--63475855	29	2.0	29	100	0	116	51	10	0	37	1.36
63475809--63475858	15	3.4	15	70	25	52	56	10	0	34	1.33
63488737--63488836	40	2.5	40	80	9	96	30	12	28	30	1.92
63489659--63489739	41	2.0	41	97	0	153	25	7	23	43	1.80
63505731--63505903	43	4.0	44	73	11	144	34	24	16	24	1.96
63505762--63505888	44	3.0	43	77	10	118	34	25	15	24	1.95
63506264--63506288	8	3.1	8	100	0	50	24	24	0	52	1.48
63507420--63507445	13	2.0	13	100	0	52	30	7	15	46	1.74
63508767--63508916	27	5.5	27	92	3	228	30	28	12	28	1.93
63508767--63508941	55	3.2	55	89	0	242	31	29	12	26	1.93
63516754--63516905	27	5.6	27	92	3	232	30	28	13	27	1.94
63516754--63516930	55	3.2	55	89	0	246	31	29	12	26	1.93
63519064--63519141	41	1.9	41	86	0	111	29	32	20	17	1.96
63519400--63519511	27	4.2	26	81	11	109	32	8	18	41	1.80
63519461--63519627	27	6.2	28	81	4	184	29	6	22	41	1.79
63519570--63519639	27	2.6	27	83	0	77	27	10	24	38	1.87
63519622--63519675	26	2.0	27	85	3	74	27	20	20	31	1.97
63523238--63523329	45	2.0	45	97	0	175	40	10	22	26	1.87
63523499--63523560	28	2.2	28	88	2	90	46	4	25	22	1.71
63538852--63539120	39	6.9	39	92	0	421	23	30	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63543619--63543796	27	6.6	27	77	6	137	30	28	15	25	1.96
63543619--63543796	54	3.3	54	78	7	164	30	28	15	25	1.96
63551623--63551800	27	6.6	27	77	6	137	30	28	15	25	1.96
63551623--63551800	54	3.3	54	78	7	164	30	28	15	25	1.96
63556633--63556799	27	6.2	26	83	4	163	24	13	19	42	1.87
63557066--63557110	23	1.9	24	90	4	74	20	4	51	24	1.66
63557127--63557173	18	2.6	18	83	6	60	19	14	12	53	1.73
63557168--63557287	40	3.0	40	75	9	104	26	20	20	32	1.97
63562518--63562634	44	2.8	44	90	5	179	32	21	15	30	1.94
63576652--63576705	27	2.0	27	85	0	72	33	22	16	27	1.95
63579815--63580037	79	2.8	78	78	11	229	26	26	20	26	1.99
63579815--63580039	40	5.7	39	81	8	217	26	26	20	26	1.99
63589064--63589145	22	3.6	23	83	5	85	43	21	18	15	1.87
63589082--63589145	23	2.8	23	83	4	76	40	21	21	15	1.91
63591923--63591966	23	2.0	22	81	4	52	52	13	0	34	1.41
63591957--63591997	18	2.3	18	91	4	66	41	19	2	36	1.65
63601607--63601685	41	1.9	41	84	5	106	24	32	20	22	1.97
63603290--63603485	39	5.0	40	82	4	197	30	29	19	20	1.98
63606724--63606848	46	2.7	46	91	0	196	20	21	28	28	1.98
63607495--63607923	212	2.0	212	84	1	565	37	10	19	31	1.86
63609278--63609316	5	7.8	5	100	0	78	82	0	17	0	0.68
63612530--63612559	13	2.3	13	94	0	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63614108--63614223	43	2.7	43	83	2	153	24	12	25	37	1.91
63614097--63614244	43	3.5	42	77	6	145	29	12	24	34	1.91
63618622--63618682	29	2.1	29	81	6	70	11	6	6	75	1.18
63623173--63623323	53	3.1	47	79	8	160	33	28	13	24	1.94
63625397--63625474	21	3.6	21	73	19	70	41	30	10	17	1.83
63630600--63633026	810	3.0	810	92	0	3998	26	24	17	31	1.97
63636542--63636648	27	4.0	26	79	7	97	39	20	21	18	1.93
63636542--63636648	54	2.0	54	83	3	135	39	20	21	18	1.93
63636754--63636817	26	2.4	26	86	5	83	31	12	23	32	1.92
63640436--63640488	21	2.4	23	81	12	67	24	15	1	58	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295