Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  14  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4474131--4474212
24
3.4
23
74
14
76
29
3
1
65
1.17
4474128--4474212
11
7.4
11
74
10
64
29
3
1
65
1.16
4474418--4474475
16
3.2
19
74
18
61
32
0
6
60
1.23
4474554--4474585
14
2.3
14
94
0
55
46
6
0
46
1.27
4476649--4476695
14
3.4
14
84
0
58
42
38
4
14
1.66
4476705--4476776
34
2.1
35
84
7
94
51
26
0
22
1.48
4480778--4480875
40
2.5
40
82
12
105
22
16
18
42
1.88
4480908--4480933
12
2.2
12
100
0
52
53
30
7
7
1.57
4483765--4483793
12
2.4
12
100
0
58
51
17
0
31
1.45
4483891--4483967
25
3.1
25
98
0
145
33
10
42
12
1.77
4486346--4486389
17
2.7
16
80
13
54
29
0
4
65
1.12
4486904--4486929
11
2.4
11
100
0
52
46
34
0
19
1.50
4488449--4488488
13
2.8
13
88
11
53
42
2
7
47
1.45
4492491--4492520
9
3.4
9
95
4
53
23
30
13
33
1.93
4511783--4511869
43
2.0
44
90
2
140
35
21
19
22
1.96
4514525--4514590
26
2.5
25
73
9
69
36
3
1
59
1.22
4514543--4514603
28
2.1
28
81
6
68
34
4
3
57
1.36
4515693--4515737
16
2.8
16
81
18
58
55
0
0
44
0.99
4518429--4518507
38
2.1
38
100
0
158
43
18
12
25
1.86
4520059--4520084
3
8.7
3
100
0
52
65
0
34
0
0.93
4522853--4522895
20
2.2
20
86
0
59
34
0
0
65
0.93
4524989--4525018
15
1.9
16
93
6
53
53
26
3
16
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4525116--4525216
13
7.8
13
75
22
70
39
48
0
11
1.40
4525118--4525219
32
3.2
32
91
2
161
38
50
0
11
1.39
4525586--4525627
19
2.3
18
87
4
57
26
2
2
69
1.13
4526549--4526586
17
2.2
17
86
9
51
60
2
5
31
1.33
4527139--4527200
22
2.8
23
92
4
94
11
0
54
33
1.36
4527269--4527298
15
1.9
16
93
6
53
10
3
33
53
1.51
4530280--4530337
28
2.1
28
100
0
116
36
17
6
39
1.76
4530789--4530830
22
1.9
22
85
9
59
42
11
30
14
1.81
4534734--4534772
17
2.2
17
86
4
51
25
0
2
71
0.98
4540062--4540110
13
3.3
16
67
21
52
44
0
14
40
1.45
4540058--4540115
28
2.0
29
96
3
109
43
0
13
43
1.44
4543245--4543291
20
2.4
19
82
10
58
17
4
8
70
1.29
4545118--4545180
17
3.5
17
83
12
81
30
6
11
52
1.61
4545564--4545956
92
4.2
92
93
1
642
38
11
10
39
1.76
4548079--4548116
9
4.2
9
93
0
67
34
18
34
13
1.89
4549185--4549219
9
4.1
9
85
14
56
57
11
0
31
1.34
4549184--4549222
16
2.4
16
95
0
69
56
10
0
33
1.33
4549292--4549325
16
2.1
16
94
0
59
47
8
0
44
1.34
4550392--4550431
21
1.9
21
85
10
55
52
0
0
47
1.00
4554057--4554103
22
2.2
22
88
11
71
44
4
19
31
1.70
4559305--4559349
21
2.0
23
83
12
58
2
26
2
68
1.12
4562405--4562457
13
4.1
13
78
7
54
43
7
1
47
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4564892--4564985
7
13.3
7
76
12
59
51
1
1
46
1.15
4564894--4564940
5
10.0
5
80
13
55
55
0
0
44
0.99
4564893--4564948
10
6.0
9
80
14
60
53
0
0
46
1.00
4566455--4566488
15
2.3
15
89
0
50
58
8
14
17
1.61
4567482--4567506
8
3.1
8
100
0
50
88
12
0
0
0.53
4568535--4568927
134
3.0
130
81
7
470
26
25
19
27
1.99
4568908--4569404
46
11.0
46
66
14
237
30
23
19
26
1.98
4568596--4569536
136
7.0
135
89
3
1235
29
24
19
26
1.99
4568614--4569514
406
2.2
397
87
3
1241
28
23
19
27
1.99
4569662--4570828
308
3.8
307
86
3
1332
29
26
16
27
1.97
4569505--4570742
132
9.4
132
90
2
1479
29
26
16
27
1.97
4571836--4571891
12
4.4
12
80
10
67
5
14
0
80
0.88
4571837--4571891
20
2.9
19
87
12
71
5
14
0
80
0.89
4572343--4572375
12
2.6
13
95
4
59
0
12
9
78
0.95
4573603--4573724
61
2.0
62
93
1
210
34
4
20
40
1.74
4575647--4575680
15
2.3
15
89
0
50
58
8
14
17
1.61
4576674--4576698
8
3.1
8
100
0
50
88
12
0
0
0.53
4579297--4579347
22
2.3
23
82
6
68
52
17
3
25
1.61
4583218--4583278
28
2.1
30
84
6
81
63
0
1
34
1.04
4583271--4583309
17
2.3
17
100
0
78
53
0
5
41
1.23
4583288--4583355
36
1.9
35
85
8
93
63
2
1
32
1.18
4583566--4583636
19
3.8
19
78
14
60
32
2
2
61
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4583541--4583636
9
10.4
9
73
14
72
33
3
2
61
1.23
4583600--4583666
19
3.6
19
71
20
52
37
1
1
59
1.16
4583618--4583689
37
1.9
38
82
2
92
34
1
2
61
1.19
4583706--4583922
89
2.5
91
85
6
279
32
8
22
36
1.84
4590254--4590283
14
2.1
14
93
0
51
16
13
36
33
1.88
4594357--4594409
18
3.1
17
81
10
63
30
1
1
66
1.13
4596055--4596230
46
3.8
46
75
15
191
21
19
28
29
1.98
4601265--4601312
17
2.8
17
80
0
60
8
8
4
79
1.06
4604572--4604600
9
3.2
9
100
0
58
48
0
0
51
1.00
4608868--4609420
113
4.9
113
93
0
908
26
20
26
26
1.99
4609320--4609478
73
2.2
73
89
0
237
25
21
24
28
1.99
4609832--4609875
17
2.7
17
89
6
65
29
0
27
43
1.55
4610156--4610193
14
2.7
15
84
12
53
26
0
28
44
1.54
4610223--4610271
14
3.4
14
81
13
64
24
2
40
32
1.67
4610213--4610284
29
2.5
30
71
15
78
25
1
37
36
1.65
4610689--4610789
47
2.2
46
90
3
157
48
7
0
43
1.32
4613902--4613931
14
2.1
14
100
0
60
23
43
0
33
1.54
4615093--4615122
15
2.0
15
93
0
51
50
0
33
16
1.46
4615355--4615388
16
2.1
16
88
0
50
35
0
2
61
1.11
4615460--4615643
43
4.3
43
85
3
199
25
18
27
28
1.98
4616976--4617030
28
1.9
29
82
10
69
34
0
7
58
1.26
4617400--4617475
29
2.6
28
81
8
89
27
1
38
32
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4617590--4617638
7
6.9
7
83
4
62
16
0
42
40
1.48
4617887--4617961
26
2.9
27
88
4
109
44
6
4
45
1.48
4618061--4618106
17
2.5
18
82
13
58
34
0
4
60
1.16
4618541--4618574
13
2.6
13
90
0
59
23
38
0
38
1.55
4622214--4622330
9
12.3
9
74
10
99
43
22
1
32
1.63
4622220--4622295
39
1.9
39
94
0
134
44
21
1
32
1.60
4622216--4622328
57
2.0
57
85
0
154
44
23
1
30
1.63
4628187--4628253
31
2.2
31
83
0
80
17
7
17
56
1.63
4628330--4628490
86
1.9
86
96
0
295
24
31
16
28
1.96
4628330--4628490
43
3.7
43
91
0
259
24
31
16
28
1.96
4635539--4635612
38
1.9
39
84
10
100
40
12
4
43
1.61
4637968--4638016
20
2.4
21
73
10
57
59
0
8
32
1.27
4638191--4638218
6
4.7
6
100
0
56
14
14
17
53
1.73
4638382--4638659
18
15.1
18
74
7
191
35
12
15
37
1.84
4639832--4639870
13
3.1
12
82
10
51
25
2
2
69
1.14
4640536--4640598
30
2.1
31
82
8
76
49
1
3
46
1.27
4650607--4650643
12
3.0
13
84
11
51
29
40
18
10
1.85
4652300--4652331
14
2.3
14
100
0
64
37
12
18
31
1.88
4661116--4661164
24
2.0
24
84
7
64
18
8
32
40
1.80
4667349--4667384
17
2.1
18
89
5
56
36
0
2
61
1.11
4668998--4669080
33
2.4
35
78
6
98
19
27
16
36
1.93
4672926--4673095
84
2.0
84
87
2
243
44
15
11
27
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4679220--4679331
36
3.2
35
73
7
102
18
25
19
36
1.94
4693507--4693578
37
1.9
37
83
10
94
58
6
5
29
1.47
4694924--4695259
44
7.7
43
77
7
320
30
25
15
28
1.96
4694897--4695259
132
2.8
132
89
2
536
30
25
15
29
1.96
4695343--4696534
46
26.4
46
63
13
380
28
22
21
27
1.99
4695267--4695872
134
4.5
134
95
0
1043
29
23
20
26
1.99
4695774--4696878
95
12.0
94
75
10
803
27
22
21
28
1.99
4695869--4696235
134
2.7
133
95
1
653
28
22
21
28
1.99
4695640--4696085
229
1.9
229
97
0
838
28
22
21
27
1.99
4695506--4696694
363
3.3
363
97
0
2245
28
22
21
27
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295