genome.fa.s7.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  162  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50807172--50807221	25	2.0	25	100	0	100	56	20	20	4	1.58
50808876--50808961	44	2.0	44	93	4	147	45	11	15	27	1.80
50809997--50810041	23	2.0	23	86	0	63	42	17	11	28	1.84
50810424--50810480	30	1.9	30	85	0	78	22	35	28	14	1.93
50811293--50811355	32	2.0	32	100	0	126	46	3	9	41	1.52
50824506--50824556	6	8.5	6	80	8	59	17	5	0	76	0.98
50824523--50824575	17	2.9	17	86	10	70	20	5	0	73	1.03
50824507--50824556	23	2.1	24	85	3	66	18	6	0	76	0.99
50824510--50824566	29	1.9	30	82	10	73	21	7	0	71	1.08
50829807--50830072	46	5.7	46	80	9	247	28	18	30	22	1.98
50831498--50831546	12	4.2	11	84	7	53	16	4	4	75	1.11
50831498--50831546	18	2.8	17	85	14	64	16	4	4	75	1.11
50831763--50831801	19	2.0	21	85	10	55	25	5	7	61	1.44
50834882--50834906	13	1.9	13	100	0	50	48	16	4	32	1.64
50836395--50836709	50	6.3	50	73	10	266	31	25	17	25	1.97
50836395--50836709	150	2.1	151	93	0	542	31	25	17	25	1.97
50837265--50837323	30	2.0	30	86	0	82	25	27	8	38	1.84
50839622--50839660	15	2.6	15	92	8	62	51	15	17	15	1.77
50859503--50859891	50	7.7	50	77	5	363	31	25	16	26	1.96
50859506--50859898	151	2.6	151	93	0	660	31	25	16	26	1.97
50859504--50859898	101	3.9	100	77	6	368	31	25	16	26	1.97
50864890--50864934	20	2.4	18	80	16	56	64	6	6	22	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50869140--50869217	33	2.4	33	78	8	86	28	23	15	33	1.95
50872034--50872092	31	1.9	31	96	0	109	44	16	1	37	1.59
50874217--50874267	24	2.2	23	86	10	68	66	7	25	0	1.18
50878437--50878476	21	2.0	20	90	5	62	35	0	22	42	1.54
50878442--50878484	21	2.1	21	83	12	54	32	0	20	46	1.51
50881841--50882044	40	5.1	40	80	7	218	25	21	27	25	1.99
50881894--50882058	79	2.1	79	82	4	199	26	20	27	26	1.99
50882250--50882654	47	8.6	47	95	1	702	32	8	29	29	1.87
50882773--50882851	37	2.1	37	85	0	104	25	16	31	26	1.96
50891200--50891245	25	1.9	24	82	8	58	30	13	15	41	1.85
50894828--50895532	40	17.6	40	92	1	1144	24	27	19	28	1.99
50901499--50902179	40	17.0	40	90	6	1015	25	27	19	28	1.98
50902156--50902204	25	2.0	25	100	0	98	36	28	14	20	1.92
50902114--50902243	65	2.0	64	96	1	242	30	26	17	25	1.97
50902179--50902268	39	2.3	40	96	3	173	25	26	21	26	1.99
50902074--50902268	104	1.9	105	97	1	374	26	27	19	26	1.99
50902081--50902298	104	2.1	105	89	4	334	28	26	17	27	1.98
50906744--50906915	93	1.8	93	92	2	292	28	29	20	22	1.98
50906745--50906912	46	3.6	46	76	15	184	29	28	20	22	1.98
50906745--50906931	46	4.0	46	71	15	145	28	28	19	22	1.98
50915650--50915877	114	2.0	114	95	0	411	40	18	10	30	1.83
50923988--50924046	13	4.5	13	72	16	50	37	8	8	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50924434--50924516	40	2.1	40	100	0	166	31	9	21	37	1.86
50927470--50927546	26	3.0	25	76	16	77	37	25	20	15	1.92
50927973--50928013	21	2.0	21	85	0	55	39	19	2	39	1.65
50935560--50935680	46	2.6	46	84	5	145	23	28	19	28	1.98
50941863--50942087	40	5.6	40	92	0	369	21	20	28	29	1.98
50941863--50942119	120	2.2	120	87	2	367	22	21	28	28	1.99
50953645--50953691	23	2.0	23	95	0	85	40	19	0	40	1.51
50953862--50954076	46	4.6	45	77	9	184	24	30	19	26	1.98
50953868--50954084	94	2.3	92	80	8	237	24	30	18	25	1.98
50956770--50956832	32	2.0	31	84	3	81	39	12	23	23	1.89
50958433--50958473	20	1.9	20	85	14	55	53	0	4	41	1.22
50960235--50962508	143	16.0	142	82	4	2473	36	10	15	37	1.81
50960235--50962508	428	5.3	428	85	3	2690	36	10	15	37	1.81
50960235--50962842	571	4.5	568	81	7	2634	36	10	15	37	1.81
50962548--50962810	142	1.9	143	81	3	325	36	9	12	41	1.75
50963380--50964126	142	5.3	141	79	8	659	36	8	16	38	1.79
50966822--50967548	143	5.1	141	80	4	760	35	8	15	40	1.79
50966856--50967549	289	2.4	284	83	4	856	35	8	16	39	1.79
50968376--50969326	143	6.7	143	80	3	1004	38	10	14	37	1.80
50968336--50969326	284	3.5	281	81	4	1087	38	9	14	37	1.80
50969254--50969412	86	1.8	86	84	0	219	33	8	17	40	1.81
50969115--50969547	229	1.9	225	84	3	573	36	9	16	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50969325--50969959	143	4.5	140	82	6	683	37	8	15	38	1.79
50968991--50969687	369	1.9	369	82	4	877	36	9	16	38	1.81
50969325--50969979	283	2.3	284	80	6	709	36	9	15	38	1.79
50970025--50971462	143	10.1	143	76	6	1256	37	9	14	38	1.78
50970025--50971454	283	5.0	282	79	5	1385	37	9	14	38	1.78
50970029--50971454	424	3.3	422	78	7	1371	37	9	14	38	1.78
50971277--50971636	196	1.8	196	89	0	567	34	11	16	37	1.85
50971473--50972402	142	6.6	141	76	6	787	36	9	14	39	1.80
50971496--50972192	282	2.5	284	85	3	924	37	10	14	37	1.81
50970855--50972037	620	1.9	619	81	4	1434	37	9	14	38	1.79
50972582--50972617	2	18.0	2	100	0	72	50	50	0	0	1.00
50978209--50980048	143	13.0	142	78	6	1544	36	9	14	39	1.79
50978205--50980029	285	6.4	283	81	6	1854	36	9	14	39	1.78
50981267--50981310	20	2.2	20	91	0	70	15	15	18	50	1.79
50982758--50983019	40	6.6	40	91	1	393	25	25	22	27	2.00
50996458--50996495	20	2.0	20	89	5	60	5	26	7	60	1.46
51000656--51001042	144	2.9	131	79	6	328	38	8	13	39	1.76
51001278--51001640	139	2.7	131	75	10	365	37	9	14	38	1.78
51001366--51002174	143	5.7	142	75	7	664	37	9	13	39	1.77
51005030--51005071	6	7.0	6	88	0	66	78	2	2	16	0.96
51006648--51006697	25	2.0	25	84	0	64	60	4	10	26	1.47
51006677--51006749	6	12.2	6	76	11	53	76	1	4	17	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51006688--51006749	20	3.4	19	78	19	78	79	0	4	16	0.90
51006677--51006751	5	14.8	5	75	19	59	76	1	4	18	1.02
51009006--51009099	6	15.3	6	68	16	50	51	14	14	19	1.77
51009017--51009099	37	2.2	37	89	0	121	51	14	14	19	1.76
51009218--51009336	27	4.5	26	84	5	148	39	22	22	15	1.91
51009218--51009339	54	2.3	54	89	1	183	39	22	22	16	1.92
51027156--51027197	23	1.9	22	90	9	68	19	14	4	61	1.49
51029479--51029541	32	2.0	32	100	0	126	25	15	22	36	1.94
51031560--51031596	18	2.1	18	90	10	58	70	5	0	24	1.08
51031560--51031597	19	2.1	18	90	5	58	71	5	0	23	1.07
51031888--51031924	19	1.9	19	88	0	56	32	18	13	35	1.90
51032042--51032081	21	1.9	21	85	10	55	12	2	15	70	1.28
51032398--51032671	78	3.5	78	88	2	397	24	23	18	32	1.97
51042905--51042940	18	2.0	18	89	10	56	69	0	0	30	0.89
51043230--51043266	19	1.9	19	94	0	65	29	18	10	40	1.85
51043233--51043274	19	2.3	19	84	8	52	33	14	14	38	1.86
51043384--51043423	20	2.0	20	85	0	53	12	2	15	70	1.28
51047279--51047535	40	6.5	40	91	2	369	22	24	28	24	2.00
51055303--51055485	40	4.6	40	93	1	287	21	23	28	26	1.99
51055303--51055520	80	2.7	79	86	3	258	23	23	28	24	2.00
51058827--51058867	21	2.0	21	85	0	55	78	4	9	7	1.10
51059133--51059168	17	2.1	17	94	0	63	41	5	8	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51075152--51075253	52	2.0	52	94	3	179	49	9	15	25	1.75
51080689--51080713	12	2.1	12	100	0	50	16	8	16	60	1.58
51081410--51081584	92	1.9	93	84	4	237	28	18	28	25	1.98
51081414--51081682	142	1.9	140	80	11	318	27	19	27	25	1.99
51081552--51081679	50	2.6	49	79	7	136	28	20	26	24	1.99
51088270--51088294	12	2.1	12	100	0	50	16	8	16	60	1.58
51089045--51089265	49	4.7	46	75	12	189	27	18	29	24	1.98
51089045--51089265	92	2.3	92	82	5	244	27	18	29	24	1.98
51100437--51100865	215	2.0	214	93	0	723	33	8	26	31	1.86
51101397--51108460	143	49.8	142	78	6	6222	36	8	14	39	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295