genome.fa.s7.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  174  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55277919--55278088	46	3.7	46	78	13	186	18	19	31	30	1.96
55277910--55278080	93	1.8	93	91	0	279	19	20	30	29	1.97
55280590--55280675	46	1.9	45	88	4	129	30	29	19	20	1.97
55283064--55283119	15	3.7	15	86	9	87	60	10	16	12	1.58
55284798--55285020	40	5.6	40	85	3	236	26	27	21	24	1.99
55284952--55285029	40	1.9	41	82	10	97	26	28	21	23	1.99
55299752--55299890	50	2.8	50	86	0	188	30	27	15	25	1.96
55299924--55300044	27	4.5	27	73	0	116	29	16	14	38	1.89
55303520--55303577	27	2.2	27	81	3	64	36	18	10	34	1.85
55303536--55303702	27	6.2	27	90	2	212	27	15	17	39	1.90
55303528--55303702	54	3.2	54	85	3	237	27	16	16	39	1.90
55304025--55304075	18	2.8	18	90	0	75	21	17	11	49	1.79
55308911--55309121	40	5.3	40	82	3	248	26	27	22	24	2.00
55311000--55311090	27	3.4	26	80	7	92	36	28	12	23	1.90
55311043--55311095	27	2.0	27	96	0	97	33	24	11	30	1.90
55311042--55311101	27	2.4	23	75	19	66	35	21	11	31	1.90
55312258--55312309	10	5.1	10	80	11	52	38	0	3	57	1.17
55312257--55312300	22	2.0	22	95	0	79	43	0	2	54	1.12
55324269--55324319	22	2.3	21	80	9	57	45	1	0	52	1.12
55324279--55324322	22	2.0	22	90	0	70	40	0	0	59	0.98
55324280--55324332	10	5.1	10	77	8	52	35	0	0	64	0.94
55326448--55326609	2	83.5	2	75	12	106	40	0	55	3	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55326466--55326517	11	4.6	11	81	13	70	34	0	65	0	0.93
55326613--55326675	2	31.5	2	96	0	117	1	0	49	49	1.10
55326678--55326764	6	14.2	6	74	9	59	35	0	63	1	1.02
55326677--55326792	26	4.9	22	77	17	81	38	0	60	0	1.03
55326680--55326862	36	5.1	36	71	11	106	37	0	61	1	1.06
55326702--55326876	8	22.6	8	72	6	74	38	0	60	1	1.07
55326753--55326800	14	3.4	14	85	0	69	50	0	50	0	1.00
55326686--55326872	10	19.5	10	71	15	128	37	0	60	1	1.07
55326677--55326876	44	4.6	43	71	13	131	37	0	61	1	1.06
55328630--55328751	61	2.0	61	100	0	244	40	13	16	29	1.86
55344191--55344232	15	2.7	16	82	14	52	52	2	0	45	1.13
55344200--55344241	15	2.9	15	82	10	52	52	0	0	47	1.00
55344329--55344370	16	2.6	16	82	14	50	52	0	2	45	1.13
55344382--55344640	91	2.8	91	98	0	491	47	2	3	47	1.32
55347210--55347234	3	8.3	3	100	0	50	32	0	36	32	1.58
55351097--55351155	31	1.9	30	86	10	84	16	13	8	61	1.56
55354255--55354446	40	4.8	41	89	3	221	25	21	26	27	1.99
55354296--55354466	80	2.1	79	81	3	191	24	21	26	27	1.99
55358083--55358145	31	2.0	32	90	3	101	38	23	0	38	1.55
55359483--55359529	22	2.2	21	82	14	53	23	0	12	63	1.28
55364302--55364816	48	10.7	48	77	3	464	29	18	27	24	1.98
55364302--55364814	144	3.6	143	81	4	516	29	18	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55366675--55366709	15	2.4	15	95	4	63	74	0	25	0	0.82
55375546--55375675	47	2.8	47	86	2	172	23	15	28	33	1.95
55378386--55378470	42	2.0	42	100	0	170	20	11	23	44	1.84
55378732--55378905	46	3.8	45	77	13	174	20	17	29	31	1.96
55378727--55378897	93	1.8	93	91	0	279	20	18	29	30	1.97
55381105--55381167	22	2.9	22	90	0	99	38	23	23	14	1.92
55381217--55381318	27	3.8	26	76	5	96	42	19	18	19	1.90
55381487--55381567	27	3.0	27	76	5	83	43	14	18	23	1.87
55381129--55381603	247	1.9	247	96	0	887	38	18	21	21	1.94
55381974--55382133	27	5.9	27	82	2	162	30	8	20	40	1.81
55387236--55387343	43	2.5	43	83	3	128	25	15	26	32	1.96
55403458--55403549	42	2.2	42	86	0	130	34	21	14	29	1.93
55403694--55403868	26	6.8	26	88	0	255	26	22	22	28	1.99
55403694--55403868	52	3.4	52	96	1	318	26	22	22	28	1.99
55404674--55404760	27	3.2	27	83	3	95	21	26	17	34	1.95
55404814--55404865	27	1.9	27	84	7	70	36	13	11	38	1.81
55406261--55406445	40	4.7	40	79	7	198	25	27	22	25	2.00
55415434--55415667	54	4.3	53	79	5	229	30	8	19	41	1.80
55415432--55415667	81	2.9	80	87	3	294	30	8	19	41	1.81
55415411--55415803	27	14.6	27	79	4	204	34	8	19	38	1.82
55424543--55424593	25	2.0	25	84	0	66	39	27	15	17	1.90
55429180--55429234	26	2.1	26	100	0	110	52	3	0	43	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55430919--55431071	43	3.6	43	74	13	145	26	15	23	33	1.95
55434401--55434451	25	2.0	25	100	0	102	29	11	19	39	1.87
55444460--55444551	48	1.9	48	88	0	139	23	17	28	30	1.97
55453733--55453857	35	3.5	35	87	1	178	13	11	34	40	1.80
55457604--55457681	25	3.2	25	64	29	69	29	29	10	30	1.90
55457582--55457913	47	7.1	47	92	0	529	27	28	11	33	1.91
55463538--55463634	48	2.2	44	83	14	119	28	28	14	27	1.95
55463561--55463692	48	2.8	48	88	2	185	28	26	17	28	1.98
55463672--55463791	37	3.2	37	86	0	159	25	25	19	30	1.98
55469951--55470034	37	2.3	37	91	4	134	22	25	21	30	1.98
55470622--55471066	219	2.0	219	100	0	890	35	20	16	27	1.94
55473095--55473212	42	2.8	43	76	2	123	31	22	14	31	1.94
55481001--55481044	8	5.4	8	82	15	54	61	0	2	36	1.09
55486272--55486394	45	2.8	43	81	9	126	23	25	22	28	1.99
55486289--55486402	45	2.6	44	83	8	142	25	23	23	27	2.00
55486399--55486707	38	8.1	38	92	0	483	31	24	22	21	1.98
55486986--55487071	43	2.0	44	90	2	138	24	31	20	23	1.98
55493492--55493589	28	3.5	28	87	4	117	27	15	26	30	1.96
55496756--55496801	22	2.0	24	83	12	60	60	2	28	8	1.38
55500690--55500784	24	4.0	24	90	0	136	33	3	36	26	1.72
55501748--55501777	8	3.8	8	90	0	51	50	13	23	13	1.77
55502192--55502302	27	4.1	27	88	1	152	16	24	21	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55508251--55508423	46	3.8	45	85	6	224	24	20	29	25	1.99
55508256--55508423	93	1.8	90	86	6	239	24	21	29	24	1.99
55512861--55512909	24	2.0	24	100	0	98	24	8	12	55	1.64
55518115--55518181	27	2.5	27	80	9	75	35	11	22	29	1.90
55519677--55519778	27	3.8	27	90	0	150	40	19	13	26	1.89
55519648--55519778	54	2.4	54	85	1	174	39	19	14	25	1.90
55519648--55519789	27	5.3	25	81	6	113	38	19	16	26	1.92
55522680--55522903	40	5.6	40	86	4	258	23	22	27	25	2.00
55522723--55522903	79	2.3	80	87	0	247	24	22	27	26	2.00
55522812--55522936	39	3.2	40	82	4	112	25	21	27	25	1.99
55522723--55522926	79	2.6	80	83	3	234	24	22	26	26	2.00
55529092--55529265	46	3.8	46	78	15	214	21	20	28	29	1.98
55529087--55529257	93	1.8	93	94	0	306	21	20	28	29	1.98
55550454--55550528	37	2.0	37	92	0	123	42	18	10	28	1.83
55552873--55553041	39	4.3	40	85	2	207	24	29	21	23	1.99
55552871--55553041	79	2.2	79	83	2	218	25	29	21	23	1.99
55560761--55560983	40	5.6	40	85	3	236	26	27	21	24	1.99
55560915--55560992	40	1.9	41	82	10	97	26	28	21	23	1.99
55565117--55565288	46	3.7	45	78	10	186	30	27	19	22	1.98
55565122--55565292	93	1.8	93	91	2	281	29	28	19	22	1.98
55576665--55576704	20	2.0	20	100	0	80	40	10	15	35	1.80
55579863--55579931	36	1.9	36	85	5	95	24	24	11	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55593216--55593269	27	2.0	27	85	0	72	38	7	14	38	1.75
55593297--55593341	23	2.0	23	86	0	63	31	15	20	33	1.93
55595029--55595108	40	2.0	40	100	0	160	40	20	2	37	1.66
55597627--55597674	25	1.9	25	86	0	69	33	25	16	25	1.96
55597718--55597756	20	2.0	20	100	0	78	35	12	20	30	1.90
55597808--55597878	23	3.1	23	100	0	142	28	21	21	29	1.98
55597865--55597892	14	2.0	14	100	0	56	28	28	14	28	1.95
55597842--55597915	37	2.0	37	100	0	148	27	24	18	29	1.98
55597879--55597935	24	2.4	24	94	2	98	24	24	21	29	1.99
55597819--55597935	60	1.9	61	96	1	218	25	23	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295