genome.fa.s7.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  160  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50325326--50325371	22	2.1	22	100	0	92	30	0	28	41	1.56
50325732--50325859	29	4.3	28	74	15	123	53	2	0	44	1.13
50325794--50325879	22	4.1	23	71	21	89	51	5	0	43	1.26
50325764--50325879	61	1.9	62	94	1	207	51	4	0	43	1.21
50325767--50325879	19	5.7	19	72	20	81	50	4	0	45	1.22
50325787--50325845	22	2.3	26	70	27	63	50	5	0	44	1.24
50326811--50326844	11	3.0	11	87	8	50	44	0	0	55	0.99
50329197--50329302	37	2.9	37	97	0	194	23	32	19	24	1.98
50329443--50329866	48	8.8	48	96	0	758	30	28	6	35	1.81
50334653--50334689	18	2.1	18	100	0	74	32	40	5	21	1.76
50337625--50337736	27	4.2	27	82	5	113	38	21	20	19	1.94
50337629--50337734	54	2.0	53	85	5	142	38	20	19	20	1.93
50341412--50341569	45	3.5	45	80	5	178	20	14	29	34	1.93
50343887--50343943	26	2.2	26	81	9	62	28	19	17	35	1.94
50345186--50345217	5	6.2	5	92	7	55	78	0	21	0	0.76
50345162--50345217	15	3.6	16	80	7	62	69	0	26	3	1.04
50346841--50346991	27	5.6	27	85	1	214	39	19	9	31	1.83
50346841--50347100	53	4.9	54	76	10	236	40	19	8	31	1.82
50346841--50347107	54	5.1	53	77	10	246	40	18	9	31	1.82
50346841--50347009	27	6.3	26	83	5	194	40	19	8	31	1.82
50346841--50347009	80	2.1	81	83	7	211	40	19	8	31	1.82
50347020--50347151	29	4.6	28	74	14	108	43	16	9	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50347177--50347373	27	7.3	27	85	1	216	29	22	6	42	1.77
50347177--50347373	81	2.4	81	86	2	254	29	22	6	42	1.77
50347386--50347842	27	17.0	27	86	2	546	34	20	20	25	1.96
50348527--50348583	27	2.2	26	90	3	87	17	24	21	36	1.94
50348743--50348833	6	14.8	6	70	17	62	20	18	14	46	1.84
50348720--50348791	31	2.3	31	92	2	117	20	15	12	51	1.75
50348755--50348819	25	2.6	25	92	0	103	20	20	13	46	1.84
50348720--50348824	31	3.6	30	78	16	103	20	18	12	49	1.79
50350751--50350898	27	5.5	27	82	3	165	43	18	8	29	1.80
50350941--50351138	27	7.3	27	83	0	225	29	21	6	41	1.78
50350941--50351138	81	2.4	81	91	0	306	29	21	6	41	1.78
50351137--50351229	27	3.4	27	76	4	98	37	18	10	33	1.85
50353346--50353437	46	2.0	45	89	4	141	31	27	19	21	1.97
50354793--50354885	38	2.4	38	98	0	177	25	44	13	16	1.85
50355723--50355775	27	2.0	27	92	0	88	22	16	22	37	1.94
50355738--50355895	27	5.8	27	87	3	201	25	10	24	39	1.86
50355887--50355956	27	2.6	27	82	8	97	38	7	21	32	1.81
50355778--50355933	82	1.9	83	80	4	181	30	8	23	37	1.85
50357013--50357474	27	17.1	27	85	6	496	33	20	21	24	1.97
50357013--50357448	81	5.4	81	86	2	574	33	21	20	24	1.97
50358367--50358426	31	1.9	31	96	0	111	21	16	13	48	1.80
50358401--50358458	25	2.3	25	84	0	71	20	18	13	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50358394--50358451	25	2.7	19	71	26	53	20	18	12	48	1.80
50358438--50358472	12	2.9	12	91	0	52	22	14	11	51	1.74
50359268--50359329	25	2.4	26	81	10	74	54	4	1	38	1.31
50364180--50364357	27	6.6	27	82	6	189	29	28	15	27	1.96
50364201--50364356	82	1.9	81	89	3	242	28	28	15	27	1.96
50364837--50364866	14	2.1	14	100	0	60	43	0	6	50	1.28
50372424--50372601	27	6.6	27	81	5	180	29	28	15	26	1.96
50372444--50372600	82	1.9	81	87	3	226	29	28	15	26	1.96
50380387--50380433	25	2.0	25	83	8	62	27	14	4	53	1.60
50380694--50380989	38	7.0	45	82	12	321	23	24	15	36	1.93
50380738--50380978	84	3.0	83	92	4	397	24	24	16	34	1.95
50383109--50383159	24	2.1	24	85	7	68	56	3	1	37	1.29
50383121--50383188	30	2.3	29	82	12	77	57	2	1	38	1.23
50384481--50384513	5	6.4	5	93	6	57	3	54	42	0	1.15
50384553--50384618	25	3.0	23	80	14	68	66	7	0	25	1.18
50384580--50384618	19	2.0	20	90	5	62	71	7	0	20	1.10
50386796--50386855	10	6.0	10	81	11	70	21	10	1	66	1.30
50387573--50387606	18	1.9	18	94	5	61	26	5	2	64	1.30
50389422--50389482	10	6.9	9	82	14	58	21	1	1	75	0.98
50391076--50391135	10	6.0	10	84	11	79	21	8	1	68	1.25
50396790--50396838	3	16.3	3	100	0	98	32	0	0	67	0.91
50397701--50397773	28	2.8	28	82	15	93	53	6	12	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50398166--50398253	25	3.7	25	69	17	71	46	5	1	46	1.34
50398174--50398247	22	3.4	22	73	14	73	44	5	1	48	1.34
50401727--50401788	29	2.2	28	86	11	83	20	38	0	40	1.53
50403622--50403668	22	2.2	21	82	14	53	57	4	4	34	1.38
50404036--50404075	7	5.4	8	80	14	50	55	2	0	42	1.13
50404030--50404075	13	3.5	13	82	11	58	56	2	0	41	1.11
50404011--50404075	11	5.6	12	78	12	64	58	3	0	38	1.14
50404036--50404075	2	21.5	2	80	14	50	55	2	0	42	1.13
50404259--50404326	12	5.7	11	76	13	55	57	2	5	33	1.38
50406066--50407676	44	37.0	44	80	9	1390	22	30	17	29	1.97
50406066--50407676	88	18.5	88	81	8	1576	22	30	17	29	1.97
50406418--50406718	87	3.4	87	80	11	389	24	29	17	27	1.97
50406066--50407676	219	7.4	216	82	7	1629	22	30	17	29	1.97
50418815--50418848	18	1.9	17	88	5	50	44	8	2	44	1.50
50419227--50419459	128	1.8	126	80	9	276	35	19	18	27	1.94
50430810--50430885	23	3.2	25	73	16	81	46	5	0	48	1.24
50430819--50430884	23	2.9	23	76	10	82	46	4	0	48	1.22
50430812--50430885	22	3.4	22	75	14	82	45	5	0	48	1.25
50435776--50435822	22	2.2	21	82	14	53	57	4	4	34	1.38
50436131--50436198	25	2.9	23	78	6	75	61	2	4	30	1.30
50436180--50436213	13	2.8	12	91	8	52	58	0	0	41	0.98
50436180--50436222	11	3.9	11	82	11	52	58	2	0	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50436401--50436468	12	5.7	11	76	13	55	57	2	5	33	1.38
50437867--50437936	37	1.9	35	85	5	95	38	4	0	57	1.19
50445397--50445439	16	2.7	16	85	0	59	27	2	18	51	1.59
50450798--50450822	13	1.9	13	100	0	50	32	4	24	40	1.73
50458094--50458184	46	2.0	46	91	0	146	27	30	7	34	1.85
50458201--50458276	22	3.3	22	66	28	59	25	27	11	35	1.91
50458158--50458603	47	9.5	47	92	0	689	24	27	13	34	1.93
50458527--50458626	22	4.4	22	75	16	96	22	31	15	32	1.94
50462538--50462633	28	3.4	28	75	2	93	31	27	19	21	1.98
50462645--50463277	40	15.9	40	92	1	966	25	28	22	24	2.00
50464981--50465071	46	2.0	46	91	0	146	27	30	7	34	1.85
50465088--50465444	22	15.3	21	62	20	70	24	26	13	34	1.93
50465045--50465471	47	9.1	47	90	0	631	25	27	12	34	1.92
50469332--50469421	28	3.2	27	73	7	81	28	28	18	23	1.98
50469322--50469453	57	2.3	57	84	3	169	28	29	19	22	1.98
50469481--50469922	40	11.4	40	83	10	562	25	28	21	24	1.99
50469903--50469945	21	2.0	21	100	0	86	30	37	13	18	1.90
50469863--50469983	61	2.0	61	96	0	224	27	33	19	20	1.96
50469561--50470097	181	2.9	182	88	5	755	25	29	21	23	1.99
50469823--50470025	101	2.0	101	93	0	343	26	30	20	22	1.98
50469783--50470065	141	2.0	141	93	1	487	26	30	20	22	1.99
50469924--50470098	40	4.4	40	94	0	296	24	29	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50471792--50471881	45	2.0	46	84	2	119	28	31	6	33	1.83
50471898--50472186	47	6.2	47	91	2	442	25	27	12	34	1.92
50471855--50472186	140	2.4	140	86	5	438	25	28	12	33	1.92
50471898--50472186	93	3.1	93	92	4	458	25	27	12	34	1.92
50472107--50472185	24	3.3	24	70	27	69	29	29	10	31	1.90
50476008--50476103	28	3.4	28	75	2	93	31	27	19	21	1.98
50476115--50476692	40	14.8	40	86	8	739	25	28	21	23	1.99
50476115--50476674	119	4.8	114	82	9	622	25	28	21	24	1.99
50478373--50478463	46	2.0	46	91	0	146	27	30	7	34	1.85
50478480--50478836	22	15.3	21	62	20	70	24	26	13	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295