genome.fa.s7.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  125  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37935979--37936021	21	2.0	21	95	0	77	48	6	16	27	1.71
37938779--37938814	18	2.0	18	88	0	54	66	0	0	33	0.92
37946800--37946856	26	2.2	26	80	3	60	28	19	19	33	1.96
37952044--37952311	40	6.7	40	96	0	473	22	27	20	30	1.98
37966548--37966720	47	3.7	47	76	12	178	23	20	26	30	1.98
37968561--37968594	17	1.9	18	94	5	61	32	5	5	55	1.48
37969372--37969550	42	4.2	43	83	2	191	34	20	13	32	1.91
37973517--37973613	51	1.9	51	97	0	185	45	11	22	20	1.83
37973531--37973611	23	3.3	23	70	26	76	44	11	23	20	1.84
37973534--37973616	25	3.3	25	67	26	75	46	12	20	20	1.82
37975749--37976026	49	5.6	48	70	16	178	26	22	15	35	1.94
37977701--37977771	35	2.0	35	94	0	124	25	8	11	54	1.63
37980094--37980154	21	2.9	21	83	11	56	50	18	14	16	1.78
37990176--37990345	46	3.7	46	78	13	195	30	28	19	22	1.98
37990181--37990351	93	1.8	93	92	0	288	29	28	19	21	1.98
37995150--37995211	31	2.0	31	90	0	97	24	30	35	9	1.87
37999793--37999964	93	1.8	93	95	2	310	28	29	20	20	1.98
37999786--37999961	46	3.8	46	79	14	209	29	29	20	20	1.98
38007363--38007534	93	1.8	93	93	2	301	28	28	20	22	1.99
38007357--38007531	46	3.8	45	79	14	196	29	28	20	21	1.98
38017332--38017485	40	3.8	39	76	7	148	36	18	22	23	1.95
38017520--38017635	41	2.8	40	88	5	162	19	20	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38017852--38017924	22	3.4	22	74	9	71	27	0	31	41	1.56
38017868--38017908	14	2.9	15	82	10	59	29	0	31	39	1.57
38017921--38017983	22	2.9	21	76	9	54	19	1	39	39	1.61
38018014--38018056	11	3.8	12	78	9	54	30	0	0	69	0.88
38018013--38018066	23	2.3	24	84	6	76	37	0	0	62	0.95
38018264--38018304	21	2.0	21	95	0	73	26	0	43	29	1.55
38018261--38018314	21	2.5	20	82	11	72	24	0	42	33	1.55
38021556--38021597	22	1.9	22	85	9	59	52	11	2	33	1.51
38022660--38022708	4	11.8	4	82	8	62	26	0	4	69	1.06
38022852--38023076	43	5.3	41	83	6	182	25	17	29	27	1.97
38022875--38023096	43	5.2	43	89	1	302	25	18	29	26	1.98
38022852--38023096	85	2.9	85	85	1	303	26	17	29	26	1.97
38024681--38024865	79	2.3	81	84	7	236	24	22	27	25	2.00
38024682--38024865	40	4.6	40	83	9	216	24	22	27	25	2.00
38024734--38024898	79	2.1	79	84	6	210	26	21	27	25	1.99
38032739--38032926	79	2.4	81	82	8	233	25	22	27	25	2.00
38032741--38032926	40	4.7	41	83	7	224	24	23	27	24	2.00
38046352--38046527	27	6.5	26	80	2	138	25	15	28	30	1.96
38046351--38046527	54	3.3	54	79	5	180	25	15	28	29	1.96
38046352--38046506	81	1.9	81	81	5	188	25	16	28	29	1.96
38047879--38047990	44	2.4	47	82	11	151	29	12	23	34	1.91
38047879--38048011	48	2.9	48	83	6	141	28	12	21	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38048830--38048870	20	2.0	20	85	4	55	46	12	7	34	1.69
38083134--38083246	43	2.7	42	83	4	129	24	15	26	32	1.96
38086388--38086544	67	2.3	67	86	6	217	33	16	29	20	1.95
38096731--38096953	40	5.6	39	81	8	200	25	21	27	26	1.99
38123822--38123930	28	3.9	28	83	3	121	27	16	14	41	1.87
38123819--38123930	56	2.0	56	82	3	136	28	16	14	41	1.87
38126876--38126975	52	1.9	52	91	0	164	44	13	9	34	1.75
38127792--38127851	27	2.2	28	81	6	77	30	18	20	31	1.96
38127800--38127870	27	2.7	26	84	4	88	23	21	15	39	1.91
38127827--38127888	27	2.3	27	83	2	72	25	22	11	40	1.87
38134523--38134564	18	2.1	21	87	12	63	19	4	23	52	1.65
38137618--38137741	49	2.5	49	85	4	167	28	27	16	28	1.97
38137605--38137739	52	2.6	51	85	5	175	28	27	15	28	1.96
38144024--38144112	27	3.3	27	87	0	115	29	15	16	38	1.90
38145882--38146042	40	4.1	40	89	2	236	22	21	29	26	1.99
38153937--38154111	40	4.4	40	84	3	221	24	21	28	26	1.99
38155468--38155667	27	7.4	27	78	6	192	34	10	16	39	1.82
38155463--38155668	54	3.8	54	81	1	245	33	10	17	38	1.84
38155463--38155667	81	2.5	80	84	2	259	33	9	18	38	1.83
38157050--38157220	93	1.8	93	93	2	299	28	28	21	22	1.99
38157041--38157216	46	3.8	46	77	8	187	29	27	20	22	1.98
38159945--38160001	30	1.9	29	89	3	87	56	17	15	10	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38165753--38165809	30	1.9	29	89	3	87	56	17	15	10	1.67
38177766--38177804	19	2.1	19	85	9	53	71	0	25	2	0.98
38179976--38180095	56	2.1	56	98	0	231	45	9	23	22	1.81
38181221--38181445	40	5.7	40	85	5	287	24	21	28	25	1.99
38181221--38181478	119	2.2	119	81	6	283	25	21	27	25	1.99
38187416--38187535	56	2.1	56	98	0	231	45	9	23	22	1.81
38188662--38188886	40	5.7	40	84	5	278	24	21	27	25	1.99
38188662--38188919	119	2.2	119	80	6	274	25	21	27	25	1.99
38191281--38191326	20	2.3	20	82	14	60	28	28	17	26	1.98
38191293--38191336	19	2.2	20	84	4	54	34	25	18	22	1.96
38194629--38194659	12	2.6	12	94	0	53	77	0	6	16	0.97
38205839--38205889	25	2.0	25	92	0	84	31	23	19	25	1.98
38205933--38205967	10	3.4	10	92	7	61	34	17	17	31	1.93
38205928--38205967	21	1.9	21	94	0	71	37	17	15	30	1.90
38206012--38206081	25	2.8	25	93	2	124	24	25	22	27	2.00
38206012--38206106	49	1.9	49	83	8	122	25	25	23	26	2.00
38213768--38213818	25	2.0	25	92	0	84	31	23	19	25	1.98
38213858--38213896	10	3.8	10	90	6	60	33	17	15	33	1.92
38213857--38213896	21	1.9	21	94	0	71	35	17	15	32	1.91
38213941--38214031	24	3.8	24	92	2	155	25	24	21	28	1.99
38213941--38214059	49	2.4	49	86	5	134	26	22	21	28	1.99
38219573--38219627	26	2.1	26	96	0	101	40	23	9	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38224484--38224578	25	3.7	25	84	2	118	26	23	21	29	1.99
38227952--38228172	40	5.6	40	85	3	232	24	21	28	25	1.99
38228027--38228209	79	2.3	80	81	3	210	25	20	27	25	1.99
38235908--38236062	40	3.9	40	90	1	215	25	20	28	25	1.99
38237619--38237712	39	2.4	41	85	8	133	19	30	23	26	1.98
38238438--38238462	10	2.5	10	100	0	50	48	28	0	24	1.52
38248904--38249075	79	2.2	79	84	3	220	25	21	27	25	1.99
38248851--38249073	40	5.6	39	81	8	209	25	21	27	25	1.99
38248931--38249108	79	2.2	80	80	3	191	25	21	28	24	1.99
38256814--38256971	40	4.0	40	90	0	219	25	20	27	26	1.99
38258580--38258679	42	2.4	42	88	3	139	22	31	22	25	1.98
38260216--38260320	43	2.5	43	83	7	117	29	26	20	23	1.99
38260738--38260762	8	3.1	8	100	0	50	24	24	0	52	1.48
38260937--38260983	22	2.1	22	100	0	94	55	25	0	19	1.43
38262148--38262186	20	2.0	20	85	10	53	51	25	5	17	1.66
38269496--38269523	13	2.2	13	100	0	56	39	14	21	25	1.91
38269863--38270003	48	3.0	48	85	1	185	31	15	21	31	1.94
38269965--38270039	38	2.0	38	94	0	132	30	16	25	28	1.96
38272907--38272960	26	2.1	26	93	6	92	18	16	22	42	1.89
38272977--38273029	15	3.5	15	82	5	63	13	15	11	60	1.59
38272973--38273029	30	1.9	30	85	7	80	12	14	15	57	1.65
38274900--38275040	48	3.0	48	86	1	185	31	16	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38276640--38276698	25	2.4	25	77	5	66	27	20	25	27	1.99
38278052--38278135	42	2.0	42	81	9	100	25	19	26	29	1.98
38282644--38282690	24	2.0	24	95	0	85	23	17	17	42	1.88
38287270--38287378	37	2.9	37	94	0	182	26	30	19	23	1.98
38287524--38287660	50	2.8	49	85	6	206	31	26	6	35	1.82
38287630--38287823	47	4.1	47	89	0	280	26	28	10	33	1.90
38287723--38287794	22	3.1	22	64	24	58	23	29	13	33	1.93
38288958--38289008	21	2.4	21	100	0	102	45	9	15	29	1.79
38296061--38296185	23	5.4	23	76	12	105	23	23	17	36	1.95
38296074--38296175	22	4.5	22	80	10	109	22	21	19	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295