genome.fa.s7.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  126  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38296039--38296177	45	3.1	44	80	12	156	23	22	17	36	1.94
38299685--38299716	15	2.2	15	94	5	57	43	25	12	18	1.85
38303719--38303843	45	2.7	46	79	8	119	24	23	17	34	1.96
38305311--38305362	27	1.9	27	96	0	95	30	28	5	34	1.81
38305455--38305576	45	2.7	45	76	2	138	22	20	11	45	1.83
38309132--38309238	50	2.1	50	87	0	151	28	12	22	36	1.90
38309135--38309214	25	3.2	24	77	13	90	28	15	22	33	1.94
38311020--38311085	33	2.0	34	82	8	82	27	3	3	66	1.21
38312347--38312464	54	2.2	54	93	3	193	40	24	8	26	1.83
38313563--38313732	86	2.0	86	96	0	313	34	35	16	13	1.88
38317002--38317206	104	2.0	104	95	0	365	29	21	19	29	1.97
38318511--38318602	36	2.9	30	73	17	103	29	13	23	33	1.92
38319992--38320091	50	2.0	50	96	0	182	27	13	21	39	1.90
38322933--38323112	71	2.5	73	79	4	197	37	23	18	20	1.94
38326458--38326683	40	5.7	40	86	4	253	26	21	26	26	1.99
38328482--38328599	44	2.7	44	85	2	159	26	16	26	31	1.96
38333124--38333375	39	6.5	38	78	6	175	17	29	16	35	1.93
38341901--38341955	21	2.6	21	100	0	110	14	23	41	20	1.89
38342589--38342637	21	2.4	20	83	6	62	20	10	8	61	1.53
38358442--38358549	41	2.6	42	80	7	121	25	14	26	32	1.95
38360834--38360913	30	2.7	30	92	0	124	31	12	26	30	1.93
38361246--38361464	46	4.7	46	75	7	149	25	18	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38369092--38369215	46	2.7	46	83	13	157	27	16	31	24	1.97
38370798--38370871	38	1.9	38	88	0	112	40	14	13	31	1.85
38379069--38379105	13	2.8	13	87	0	56	13	32	32	21	1.92
38379504--38379583	39	2.1	39	92	0	133	48	18	2	30	1.61
38392781--38392955	50	3.5	49	80	7	183	25	17	28	29	1.97
38392770--38392955	101	1.9	100	85	4	259	24	17	29	29	1.97
38395369--38395443	31	2.4	31	93	0	123	28	25	16	30	1.96
38395467--38395558	42	2.2	42	88	0	130	32	22	15	29	1.95
38395703--38395896	26	7.5	26	87	5	270	28	22	22	26	1.99
38396700--38396771	27	2.7	26	82	8	90	22	25	23	29	1.99
38396710--38396771	27	2.3	27	88	0	97	20	27	20	30	1.98
38396882--38397019	27	5.1	27	79	6	136	29	7	21	41	1.80
38397041--38397125	26	3.2	26	85	5	91	41	10	20	28	1.85
38397055--38397141	27	3.3	27	82	4	106	41	10	22	25	1.85
38398229--38398339	46	2.4	46	81	0	132	29	21	19	28	1.98
38406258--38406453	39	4.9	39	84	5	216	26	27	20	25	1.99
38414275--38414443	40	4.3	40	90	3	229	26	27	20	24	1.99
38418283--38418466	40	4.6	40	83	6	205	23	21	27	27	1.99
38418283--38418463	80	2.3	81	84	9	230	23	21	27	27	1.99
38418283--38418503	40	5.6	39	78	10	182	24	21	27	26	1.99
38426231--38426407	40	4.4	40	83	7	191	25	20	25	28	1.99
38426224--38426404	80	2.3	81	83	9	221	24	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38428277--38428326	24	2.1	24	85	7	66	22	22	22	34	1.97
38454806--38454843	18	2.1	18	95	0	67	42	21	5	31	1.75
38454999--38455220	91	2.5	92	85	2	299	28	22	19	29	1.98
38466432--38466494	33	1.9	33	93	0	108	25	11	11	52	1.70
38468438--38468485	16	2.7	19	78	15	66	60	6	2	31	1.33
38474462--38474631	40	4.3	40	89	0	225	26	27	21	24	1.99
38474462--38474608	79	1.9	80	89	1	233	27	27	20	25	1.99
38474460--38474684	80	2.8	79	82	3	245	26	27	20	24	1.99
38474460--38474684	40	5.7	40	84	4	204	26	27	20	24	1.99
38474462--38474684	120	1.9	119	81	6	272	26	27	21	25	1.99
38474616--38474693	40	1.9	41	82	10	97	26	28	21	23	1.99
38477325--38477372	16	2.7	19	78	15	66	60	6	2	31	1.33
38483349--38483571	40	5.6	40	85	3	236	26	27	21	24	1.99
38483503--38483580	40	1.9	41	82	10	97	26	28	21	23	1.99
38491303--38491472	40	4.3	40	89	0	225	26	27	21	24	1.99
38491303--38491449	79	1.9	80	89	1	233	27	27	20	25	1.99
38491301--38491525	80	2.8	79	82	3	245	26	27	20	24	1.99
38491301--38491525	40	5.7	40	84	4	204	26	27	20	24	1.99
38491303--38491525	120	1.9	119	81	6	272	26	27	21	25	1.99
38491457--38491534	40	1.9	41	82	10	97	26	28	21	23	1.99
38495458--38495490	14	2.4	14	90	10	50	60	0	0	39	0.97
38512069--38512284	27	8.0	27	79	3	202	39	19	13	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38512096--38512284	80	2.3	81	87	0	263	39	18	13	28	1.89
38512272--38512579	27	11.5	26	83	7	334	19	17	20	41	1.90
38512274--38512579	80	3.8	82	85	6	394	19	17	20	42	1.90
38512272--38512580	107	2.9	106	85	1	422	19	17	20	42	1.90
38520140--38520167	12	2.3	12	100	0	56	46	35	0	17	1.49
38524488--38524715	40	5.7	40	95	0	402	31	20	26	21	1.98
38542714--38542800	25	3.5	25	76	7	79	25	14	24	35	1.94
38545562--38545620	30	2.0	29	86	3	82	28	25	6	38	1.81
38553114--38553174	30	2.0	30	87	0	86	32	24	4	37	1.77
38565917--38566143	40	5.7	40	94	1	393	31	20	26	21	1.98
38565917--38566143	79	2.8	80	94	2	395	31	20	26	21	1.98
38565917--38566143	119	1.9	119	93	0	382	31	20	26	21	1.98
38572161--38572428	40	6.7	40	96	0	482	31	20	26	21	1.98
38581721--38581896	46	3.8	45	78	10	194	21	19	29	28	1.98
38581717--38581888	93	1.8	93	92	0	290	21	20	30	27	1.98
38584889--38584970	40	2.0	40	100	0	164	34	14	17	34	1.90
38585603--38585773	87	2.0	87	96	0	315	33	18	22	25	1.96
38588872--38588948	32	2.4	32	93	2	127	45	15	5	33	1.69
38589880--38590053	43	4.0	43	86	5	226	27	28	18	25	1.98
38591353--38591381	14	2.0	15	93	6	51	48	20	0	31	1.50
38592022--38592061	19	2.1	19	86	9	55	20	10	5	65	1.42
38593475--38593644	46	3.7	44	78	13	182	23	19	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38602415--38602525	54	2.1	54	100	0	222	33	26	12	27	1.92
38621597--38621816	45	5.0	45	89	2	295	24	21	28	25	1.99
38626821--38626935	37	3.1	37	92	2	178	26	28	18	26	1.98
38627070--38627254	48	3.8	48	89	4	282	30	26	6	36	1.82
38627070--38627253	98	1.9	98	91	4	302	29	26	6	36	1.82
38627176--38627417	47	5.1	47	86	2	272	26	28	9	34	1.89
38627317--38627388	22	3.1	22	69	18	65	26	29	11	33	1.91
38627309--38627418	25	4.6	25	68	17	83	29	29	8	33	1.86
38639004--38639039	6	6.2	6	87	6	56	13	2	0	83	0.76
38645731--38645777	23	2.1	22	84	11	60	23	2	25	48	1.62
38652294--38652391	43	2.3	43	82	7	119	26	13	25	34	1.93
38660057--38660213	43	3.7	43	76	9	142	27	16	25	30	1.97
38665536--38665576	22	2.0	20	85	9	55	31	24	0	43	1.54
38667142--38667282	67	2.0	67	86	8	194	31	21	28	18	1.97
38667904--38668102	27	7.4	27	83	1	256	25	19	20	34	1.96
38667904--38668109	107	1.9	108	87	1	288	26	18	19	34	1.95
38668129--38668289	27	6.0	27	75	6	96	26	11	24	37	1.89
38668131--38668296	54	3.1	53	73	10	167	27	10	23	38	1.87
38668095--38668295	108	1.9	106	83	4	260	29	9	23	37	1.87
38672938--38672994	29	2.0	29	96	0	105	29	15	21	33	1.94
38675131--38675238	27	4.0	26	87	8	144	16	23	22	37	1.93
38680001--38680044	22	2.0	22	90	0	70	38	11	20	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38683217--38683245	12	2.3	13	94	5	51	37	0	0	62	0.96
38690764--38690820	19	3.1	19	79	18	59	57	0	0	42	0.98
38690840--38690869	15	2.0	15	93	0	51	70	0	6	23	1.11
38692401--38692438	20	1.9	20	88	0	58	50	5	7	36	1.54
38692486--38692526	22	1.9	21	85	5	55	68	9	19	2	1.29
38693192--38693218	3	9.0	3	100	0	54	33	0	0	66	0.92
38697883--38698163	101	2.8	97	80	8	289	27	18	25	28	1.98
38697937--38698220	151	1.9	150	88	0	433	27	17	26	29	1.97
38697885--38698223	50	6.8	50	80	4	333	27	17	26	29	1.97
38698784--38699107	180	1.8	180	88	0	495	40	8	18	32	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295