genome.fa.s7.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  176  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55825879--55826096	94	2.4	91	80	6	235	27	20	29	22	1.99
55828612--55828639	13	2.2	13	100	0	56	28	0	14	57	1.38
55830051--55830296	40	6.2	40	90	3	347	23	21	26	28	1.99
55830044--55830282	120	2.0	120	91	0	388	23	21	25	29	1.99
55836804--55836831	13	2.2	13	100	0	56	28	0	14	57	1.38
55838242--55838487	40	6.2	40	91	1	354	22	21	27	29	1.99
55842084--55842255	46	3.7	45	76	11	179	21	18	29	30	1.97
55842076--55842248	93	1.9	93	91	2	285	21	19	29	28	1.98
55847679--55847849	47	3.7	46	74	9	143	26	22	28	21	1.99
55849099--55849174	35	2.2	35	81	9	86	57	2	0	39	1.12
55849130--55849169	13	2.9	14	81	7	55	57	0	0	42	0.98
55854857--55854971	7	14.8	8	76	15	75	33	1	4	60	1.27
55855574--55855620	21	2.2	21	85	7	60	44	29	4	21	1.71
55855923--55856078	7	22.0	7	75	5	80	39	35	3	21	1.70
55856134--55856160	14	1.9	14	100	0	54	48	29	0	22	1.51
55856527--55856646	66	1.9	65	86	6	174	34	15	18	31	1.92
55859286--55859493	54	3.9	54	87	1	274	38	16	21	23	1.93
55859597--55859684	30	2.9	31	80	14	103	20	12	26	40	1.88
55861769--55861920	64	2.2	68	79	10	168	32	15	30	21	1.94
55866233--55866414	67	2.8	64	77	9	192	29	16	30	23	1.96
55870232--55870310	37	2.1	37	90	0	122	25	31	18	24	1.98
55870429--55871008	47	12.1	47	91	4	890	28	29	9	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55870429--55871008	96	6.0	97	91	3	885	28	29	9	32	1.89
55870429--55871008	143	4.0	143	94	1	989	28	29	9	32	1.89
55875730--55875773	23	1.9	23	95	0	79	43	18	4	34	1.70
55877399--55877560	42	3.8	42	79	1	198	33	16	22	27	1.96
55877399--55877556	85	1.9	84	87	1	235	33	16	22	27	1.95
55881605--55881638	17	2.0	17	88	0	50	44	29	5	20	1.75
55887192--55887454	40	6.6	40	86	3	307	26	28	20	24	1.99
55903776--55904038	40	6.6	40	86	3	307	26	28	20	24	1.99
55907096--55907175	37	2.2	37	86	0	115	17	13	30	38	1.88
55909940--55910035	42	2.3	42	81	1	102	31	25	17	26	1.97
55909963--55910074	44	2.6	42	78	10	104	30	25	20	23	1.98
55913947--55914170	40	5.6	40	86	4	299	23	22	28	25	1.99
55913951--55914170	83	2.7	80	86	4	284	22	23	28	25	1.99
55926519--55926703	79	2.3	81	83	7	227	24	22	27	24	2.00
55926520--55926703	40	4.6	40	82	9	207	25	22	27	24	2.00
55926572--55926736	79	2.1	79	83	6	201	26	21	27	24	1.99
55933634--55933790	27	5.9	27	80	5	167	40	18	14	27	1.89
55933634--55933787	54	2.9	53	87	5	204	40	17	14	27	1.88
55933634--55933788	81	1.9	80	83	5	197	40	17	14	27	1.88
55933781--55934022	27	8.9	27	92	1	369	19	18	21	40	1.91
55942489--55942886	27	14.9	27	80	7	402	39	19	14	25	1.90
55942521--55942886	133	2.8	132	86	2	518	39	19	15	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55943530--55943710	40	4.6	40	76	7	154	35	20	18	25	1.95
55948074--55948153	38	2.1	38	90	0	124	20	22	28	28	1.98
55948146--55948300	43	3.6	43	94	0	265	10	23	34	32	1.88
55948630--55948737	45	2.5	42	83	8	119	24	25	25	25	2.00
55951773--55951804	15	2.1	16	88	11	50	21	3	21	53	1.60
55954410--55954584	46	3.7	46	81	5	183	30	20	26	22	1.98
55956620--55956666	20	2.3	20	85	3	58	38	0	12	48	1.41
55957010--55957403	50	7.9	50	76	5	400	26	17	24	30	1.97
55957011--55957403	101	3.9	100	78	5	393	26	17	24	30	1.97
55957012--55957400	151	2.6	151	92	0	627	26	17	24	30	1.97
55960579--55960617	15	2.6	15	92	8	62	15	17	15	51	1.77
55963194--55963240	19	2.3	20	82	10	60	36	0	14	48	1.44
55963585--55963881	50	5.9	50	84	2	362	27	17	25	30	1.97
55963589--55963878	151	1.9	151	94	0	508	26	17	25	30	1.97
55963794--55963876	26	3.3	26	63	24	68	26	14	27	31	1.95
55964081--55964112	16	2.0	16	93	0	55	46	0	18	34	1.49
55965832--55965857	13	2.0	13	100	0	52	7	23	38	30	1.83
55968246--55968271	12	2.2	12	100	0	52	50	7	0	42	1.31
55968751--55968927	27	6.6	27	82	5	196	27	15	27	29	1.96
55968752--55968906	81	1.9	81	86	5	224	27	15	27	29	1.96
55968748--55968927	81	2.2	81	82	3	220	27	15	27	30	1.96
55971288--55971346	29	2.0	29	90	0	91	47	16	13	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55973343--55973387	20	2.2	21	88	4	65	42	20	0	37	1.52
55976191--55976399	39	5.3	39	93	2	323	24	27	22	25	2.00
55976191--55976452	78	3.3	78	87	7	302	24	27	22	25	2.00
55984215--55984437	39	5.6	39	82	8	224	25	27	21	26	1.99
55984215--55984437	79	2.8	79	82	9	233	25	27	21	26	1.99
55988128--55988183	27	2.1	27	96	0	103	33	19	7	39	1.79
55990385--55990458	27	2.7	27	79	4	78	25	32	14	27	1.95
56012266--56012338	7	10.4	7	93	0	128	41	42	0	16	1.48
56012266--56012338	28	2.6	28	100	0	146	41	42	0	16	1.48
56019399--56019431	3	11.3	3	93	6	59	69	0	0	30	0.88
56023829--56023878	22	2.2	22	79	10	57	28	2	12	58	1.45
56024583--56024623	20	2.0	20	85	4	55	48	12	7	31	1.68
56028822--56028860	18	2.2	18	90	9	62	38	0	0	61	0.96
56029108--56029140	16	2.1	16	100	0	66	42	15	18	24	1.88
56029604--56029642	20	2.1	18	85	9	51	41	0	5	53	1.23
56032872--56032996	66	1.9	66	85	3	171	41	16	13	28	1.86
56034026--56034072	24	2.0	24	91	0	76	44	0	19	36	1.51
56035216--56035247	16	2.1	15	94	5	55	78	0	21	0	0.76
56035218--56035263	17	2.6	19	83	13	62	76	0	19	4	0.96
56041392--56041457	29	2.3	29	92	2	107	25	12	28	33	1.92
56044617--56044997	27	14.1	27	76	7	103	39	21	7	31	1.81
56044617--56044729	54	2.1	54	84	0	145	30	23	7	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56044629--56044772	54	2.7	54	78	0	135	35	21	7	35	1.82
56044723--56044995	81	3.4	79	79	8	264	43	20	6	28	1.78
56044789--56044996	54	3.9	53	78	10	208	43	20	7	28	1.78
56044723--56045058	27	12.4	27	74	10	175	42	19	7	30	1.79
56045114--56045173	27	2.2	27	82	5	77	36	20	23	20	1.95
56045987--56046110	26	4.8	26	81	6	146	26	24	20	28	1.99
56045987--56046110	52	2.4	51	87	10	182	26	24	20	28	1.99
56048605--56048662	27	2.1	27	83	0	71	32	22	8	36	1.85
56048614--56048717	27	3.9	27	89	2	156	27	20	8	43	1.81
56048695--56048969	27	10.2	27	75	8	114	40	20	8	30	1.82
56048622--56048744	54	2.3	54	84	2	158	30	18	8	41	1.81
56048695--56049054	54	6.7	55	76	6	236	39	20	9	31	1.83
56048736--56048943	27	7.7	27	80	8	176	42	20	8	28	1.81
56048761--56048943	81	2.3	81	89	2	271	41	19	8	30	1.82
56048761--56048967	81	2.6	81	86	3	249	42	19	9	29	1.82
56048924--56049031	27	3.9	27	77	13	103	40	18	9	31	1.82
56049072--56049145	27	2.7	27	78	12	80	37	21	20	20	1.94
56049957--56050080	26	4.8	26	86	3	171	25	24	22	27	2.00
56049957--56050080	52	2.4	51	91	2	205	25	24	22	27	2.00
56050211--56050297	42	2.1	41	86	2	120	34	12	16	36	1.86
56056420--56056458	20	2.0	20	100	0	78	33	15	30	20	1.94
56059464--56059505	22	1.9	22	100	0	84	30	9	30	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56064016--56064100	42	2.0	42	97	0	161	31	25	1	41	1.63
56067297--56067375	37	2.1	37	88	0	113	26	30	18	24	1.98
56067494--56067941	47	9.4	47	91	1	662	28	30	9	31	1.88
56071131--56071406	40	6.9	40	83	2	279	24	27	23	24	2.00
56071722--56071795	29	2.6	28	87	8	96	25	31	16	27	1.96
56071781--56071965	43	4.3	43	96	0	343	27	35	14	23	1.93
56073815--56073893	37	2.1	37	88	0	113	26	30	18	24	1.98
56074012--56074510	47	10.4	47	90	2	710	29	29	8	32	1.87
56079732--56079819	24	3.7	24	78	4	90	15	22	21	39	1.91
56085359--56085390	16	2.0	16	93	0	55	50	34	6	9	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295