genome.fa.s2.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  10  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3020844--3020887	16	2.9	15	83	9	54	72	4	0	22	1.02
3021051--3021107	22	2.7	20	76	12	60	31	1	3	63	1.22
3021202--3021283	19	4.3	19	81	9	87	24	1	3	70	1.10
3021142--3021274	9	14.6	9	72	12	85	28	1	3	66	1.15
3021242--3021282	18	2.3	17	87	8	55	29	0	2	68	1.03
3022779--3022817	16	2.4	16	87	8	53	46	0	2	51	1.14
3022979--3023037	27	2.2	27	81	6	66	42	5	3	49	1.41
3026818--3026851	16	2.1	17	88	5	52	41	2	2	52	1.31
3028595--3028659	31	2.1	31	100	0	130	15	6	9	69	1.35
3032802--3032832	16	1.9	16	93	0	53	6	12	19	61	1.53
3035544--3035599	27	2.1	27	100	0	112	46	3	28	21	1.68
3038465--3038489	1	25.0	1	100	0	50	100	0	0	0	0.00
3043231--3043257	12	2.2	12	100	0	54	51	0	0	48	1.00
3044145--3044216	36	2.0	36	100	0	144	41	16	16	25	1.89
3048184--3048318	58	2.3	58	83	0	180	34	11	17	36	1.87
3048293--3048349	27	2.1	27	86	0	78	50	7	14	28	1.68
3048484--3048534	21	2.4	20	75	18	50	50	0	1	47	1.12
3053855--3053898	21	2.1	21	95	0	79	50	29	9	11	1.69
3060041--3060120	33	2.4	33	87	4	99	42	15	23	18	1.88
3060057--3060122	33	2.0	33	100	0	132	39	15	21	24	1.91
3063740--3063806	36	1.9	34	87	6	98	59	0	1	38	1.06
3064138--3064184	22	2.2	22	88	3	69	25	4	0	70	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3075941--3076025	39	2.2	39	100	0	170	51	15	11	21	1.74
3090643--3090692	25	2.0	25	100	0	100	36	16	16	32	1.90
3090645--3090699	25	2.2	25	90	0	83	38	20	14	27	1.91
3103997--3104038	17	2.5	17	84	3	59	38	0	0	61	0.96
3104222--3104255	18	1.9	18	94	5	61	11	8	23	55	1.63
3108177--3108914	354	2.1	358	86	6	1041	25	23	17	34	1.96
3121777--3121817	21	2.0	21	90	0	64	29	21	29	19	1.98
3128219--3128543	114	2.9	114	86	1	447	29	12	25	32	1.93
3129547--3129589	22	2.0	22	81	9	52	25	2	9	62	1.37
3129858--3129889	4	8.0	4	92	0	55	53	0	0	46	1.00
3132506--3132536	16	1.9	16	93	0	53	35	0	6	58	1.24
3132655--3132716	14	4.1	15	80	14	65	38	4	0	56	1.21
3132791--3132851	21	3.2	19	78	13	72	32	3	9	54	1.50
3136903--3137642	354	2.1	359	86	6	1036	25	23	17	34	1.96
3140636--3140724	31	2.8	31	77	8	90	43	7	2	46	1.45
3144332--3144495	35	4.7	35	77	2	141	30	12	24	32	1.92
3144332--3144495	70	2.3	70	82	4	188	30	12	24	32	1.92
3146802--3146843	11	3.8	11	79	20	52	71	0	2	26	0.98
3147659--3147698	21	1.9	21	85	10	55	57	2	2	37	1.26
3150921--3150994	25	2.8	26	72	13	62	62	2	5	29	1.31
3151049--3151123	2	39.5	2	71	10	50	45	4	5	45	1.45
3151283--3151325	22	2.0	22	86	9	61	62	0	4	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3155704--3155952	50	4.8	50	85	4	284	20	29	24	26	1.99
3155703--3155952	100	2.4	104	88	6	357	20	29	24	26	1.99
3156047--3156078	13	2.5	13	94	0	55	56	12	0	31	1.37
3156290--3156347	30	1.9	30	89	0	89	31	24	3	41	1.71
3162571--3162631	20	3.0	19	74	11	50	47	6	6	39	1.55
3167761--3167818	9	6.4	9	87	0	89	43	20	8	27	1.81
3167839--3167891	6	8.5	6	87	8	79	16	0	3	79	0.88
3167839--3167888	26	1.9	26	95	0	91	18	0	4	78	0.91
3167916--3167953	18	2.1	18	90	0	58	7	5	44	42	1.56
3175626--3175755	64	2.0	64	100	0	260	24	23	21	30	1.99
3176800--3176826	13	2.1	13	100	0	54	33	14	14	37	1.88
3177027--3177062	17	2.1	17	89	0	54	55	0	0	44	0.99
3177534--3177575	21	2.0	21	81	9	50	42	2	11	42	1.54
3177665--3177722	22	2.6	22	83	2	71	48	6	1	43	1.40
3179955--3179980	12	2.2	12	100	0	52	0	7	0	92	0.39
3185980--3186046	32	2.1	31	83	8	82	38	10	1	49	1.46
3189175--3189353	47	3.8	49	82	13	232	30	27	19	22	1.98
3189182--3189353	94	1.8	93	92	1	290	29	27	19	23	1.98
3198691--3198725	17	2.1	17	100	0	70	37	17	17	28	1.92
3198741--3198801	25	2.4	25	88	0	86	55	0	1	42	1.09
3205021--3205172	23	6.5	22	79	12	137	25	22	19	33	1.97
3205021--3205172	45	3.2	45	82	12	157	25	22	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3227804--3227838	15	2.3	15	90	9	54	51	22	0	25	1.48
3228506--3228813	123	2.5	123	93	2	503	34	27	17	20	1.95
3228506--3228828	41	7.9	41	89	2	416	34	26	17	20	1.95
3228943--3229123	64	2.9	63	89	8	262	41	17	8	32	1.79
3233599--3233633	15	2.3	15	95	0	61	37	14	2	45	1.59
3233605--3233639	15	2.3	15	90	0	52	37	20	0	42	1.52
3236758--3236921	57	2.9	57	80	7	215	31	10	18	39	1.84
3238782--3238825	21	2.1	21	87	4	63	6	13	0	79	0.92
3239533--3239947	3	139.7	3	66	15	116	29	6	2	60	1.36
3239533--3239570	14	2.6	15	91	8	69	31	5	0	63	1.17
3239546--3239614	23	3.0	22	73	10	66	34	4	0	60	1.16
3239814--3239896	22	3.9	21	73	16	73	27	7	0	65	1.19
3240230--3240281	28	2.0	27	85	14	74	40	5	5	48	1.51
3243345--3243388	20	2.2	20	100	0	88	38	4	6	50	1.50
3248663--3248831	90	1.9	90	85	2	232	40	18	14	25	1.89
3250362--3250426	26	2.4	28	80	15	73	70	1	0	27	0.96
3261038--3261077	20	2.0	20	85	9	55	45	27	5	22	1.73
3264877--3264947	31	2.3	31	80	4	81	47	12	12	26	1.77
3275014--3275038	10	2.5	10	100	0	50	52	0	8	40	1.31
3279015--3279070	26	2.2	25	83	3	76	57	0	5	37	1.22
3279344--3279410	32	2.2	31	84	10	84	44	4	7	43	1.52
3282859--3282904	22	2.1	22	87	0	65	39	36	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3284210--3284317	26	4.2	26	90	0	171	32	6	23	37	1.80
3288479--3288503	12	2.1	12	100	0	50	40	24	20	16	1.91
3291369--3291473	26	4.0	26	89	0	165	32	6	22	38	1.80
3291371--3291476	52	2.0	52	94	0	185	33	6	21	38	1.80
3294268--3294297	15	2.0	15	100	0	60	26	20	6	46	1.75
3294392--3294601	3	73.3	3	67	18	76	29	6	2	61	1.32
3294374--3294425	17	2.8	18	85	11	61	30	5	1	61	1.30
3294798--3294867	27	2.7	26	80	10	81	32	7	8	51	1.60
3297681--3297734	23	2.5	23	82	8	60	61	7	0	31	1.24
3297744--3297805	25	2.5	23	75	17	54	56	0	9	33	1.32
3297945--3297990	15	2.9	15	90	6	65	67	0	6	26	1.15
3297937--3298039	23	4.7	23	75	13	92	66	0	8	24	1.26
3300193--3300255	33	1.9	32	90	3	99	55	7	14	22	1.64
3304985--3305016	10	3.2	10	90	0	55	46	9	12	31	1.73
3305012--3305095	26	3.2	26	94	0	141	33	3	25	38	1.73
3306577--3306629	26	2.0	26	82	7	63	39	20	13	26	1.89
3314641--3314696	26	2.2	26	93	0	94	37	23	8	30	1.85
3315297--3315338	22	1.9	22	90	0	66	66	0	7	26	1.17
3315492--3315539	12	3.8	12	76	10	51	62	4	6	27	1.38
3316261--3316310	21	2.2	22	82	13	66	74	0	8	18	1.06
3316265--3316311	23	2.0	23	87	4	67	72	0	8	19	1.10
3319228--3319288	30	2.0	30	87	6	88	16	4	50	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3319260--3319355	42	2.3	42	94	0	165	14	8	54	22	1.67
3319319--3319394	33	2.3	33	90	0	116	13	11	56	18	1.66
3319372--3319508	57	2.5	57	89	3	199	13	8	51	26	1.70
3320657--3320714	29	2.0	29	82	3	71	34	3	5	56	1.38
3320785--3320920	68	2.0	66	88	2	200	30	13	9	45	1.76
3322357--3322450	47	2.0	47	97	0	179	30	18	17	34	1.93
3334873--3334916	19	2.4	18	78	14	54	59	0	0	40	0.98
3336798--3336843	23	2.0	23	86	0	65	30	2	19	47	1.61
3339650--3339690	11	3.7	11	80	0	55	19	14	9	56	1.66
3339913--3339945	11	2.9	12	86	13	52	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295