genome.fa.s2.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  116  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39876487--39876564	18	4.4	18	82	7	72	17	2	1	78	0.94
39880551--39880588	19	2.0	20	85	15	53	39	23	0	36	1.55
39880818--39880988	93	1.8	93	91	0	279	29	28	19	21	1.98
39880817--39880985	46	3.7	45	78	10	180	30	28	19	21	1.98
39887470--39887507	19	2.0	20	85	15	53	39	23	0	36	1.55
39887736--39887857	46	2.7	46	87	2	156	31	26	20	22	1.98
39888280--39888340	30	2.0	30	90	0	95	34	24	4	36	1.77
39896052--39896479	47	9.1	47	95	0	750	35	11	28	24	1.91
39897772--39898129	40	8.9	40	90	0	482	21	23	30	24	1.99
39902102--39902223	22	5.3	22	63	24	63	33	13	29	23	1.93
39902080--39902273	47	4.1	47	94	0	325	35	11	29	24	1.90
39905764--39905843	34	2.4	34	89	2	117	30	25	21	23	1.99
39906624--39906688	31	2.1	31	85	5	87	27	9	18	44	1.80
39906622--39906697	31	2.3	33	78	15	86	30	7	18	43	1.78
39908341--39908431	45	2.0	45	97	0	173	35	20	23	20	1.96
39926497--39926614	42	2.8	42	79	5	130	32	27	16	23	1.96
39926537--39926657	44	2.8	44	79	9	115	33	22	17	26	1.96
39928604--39928681	33	2.4	33	79	12	88	25	21	19	33	1.97
39943902--39943984	25	3.3	25	80	6	96	26	20	21	31	1.98
39943892--39943984	25	3.7	25	75	5	80	25	22	21	30	1.99
39953198--39953240	16	2.7	16	96	0	77	72	11	6	9	1.29
39956216--39956339	43	2.9	43	76	9	128	33	23	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39958321--39958366	24	1.9	24	82	8	58	41	4	30	23	1.74
39959685--39959903	27	8.2	26	76	8	161	40	19	8	31	1.82
39959692--39959903	81	2.6	80	82	5	248	41	18	8	32	1.80
39959685--39959903	54	4.1	53	77	11	180	40	19	8	31	1.82
39959856--39959917	27	2.3	27	82	0	79	43	14	12	29	1.83
39959902--39959951	24	2.0	26	84	7	68	22	14	28	36	1.92
39967256--39967378	43	2.9	43	80	8	135	34	24	15	25	1.94
39972802--39972972	93	1.8	93	88	0	261	30	26	19	22	1.98
39978551--39978615	27	2.4	26	87	7	94	21	21	18	38	1.93
39981116--39981229	48	2.4	48	82	2	149	25	21	24	28	1.99
39983577--39983677	45	2.2	45	80	3	112	24	25	9	39	1.86
39983606--39983695	45	2.0	43	89	4	135	26	21	10	42	1.84
39987144--39987244	23	4.4	23	80	7	116	34	19	28	16	1.94
39989875--39989938	26	2.4	26	89	5	101	65	9	10	14	1.47
39991246--39991424	85	2.1	85	97	0	340	37	8	27	26	1.85
39992693--39993099	47	8.6	47	93	2	588	33	8	29	28	1.87
39995529--39995603	38	2.0	38	86	5	107	30	18	26	24	1.98
39995657--39995897	40	6.1	40	88	0	322	24	21	28	25	1.99
39996755--39996781	13	2.1	13	100	0	54	25	14	22	37	1.93
39997166--39997344	85	2.1	85	98	0	349	37	8	27	26	1.85
39998658--39998705	23	2.1	23	100	0	96	35	0	25	39	1.56
39998694--39999039	47	7.3	47	89	2	491	33	9	29	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40000806--40000901	48	2.0	48	100	0	192	27	20	25	27	1.99
40001175--40001199	13	1.9	13	100	0	50	32	32	12	24	1.91
40013768--40013961	47	4.1	47	86	0	262	33	10	28	27	1.90
40013931--40014213	48	5.8	48	88	4	433	35	6	26	31	1.82
40014363--40014467	37	2.8	37	89	0	165	25	18	30	25	1.98
40016358--40016390	15	2.2	16	89	10	52	24	3	0	72	0.98
40016945--40017003	29	2.0	29	86	0	82	18	22	37	22	1.94
40016950--40017011	29	2.1	29	81	0	70	17	22	35	24	1.95
40023576--40023629	23	2.3	24	84	9	67	40	7	1	50	1.41
40024652--40024676	3	8.3	3	100	0	50	68	0	0	32	0.90
40025030--40025056	3	9.0	3	100	0	54	66	0	0	33	0.92
40030450--40030540	46	2.0	46	95	0	164	27	21	21	28	1.99
40033445--40033501	24	2.4	24	93	0	96	33	21	14	31	1.92
40033445--40033512	24	2.8	24	90	0	91	30	20	17	30	1.96
40046339--40046447	37	2.9	37	86	0	155	25	30	20	23	1.98
40046594--40046830	50	4.8	47	84	9	321	30	25	7	36	1.83
40046594--40046830	48	4.8	49	86	9	347	30	25	7	36	1.83
40046594--40046843	100	2.5	100	96	1	461	30	25	7	36	1.83
40046752--40046899	47	3.1	47	81	6	149	29	29	8	33	1.87
40051477--40051524	23	2.1	23	96	0	87	20	6	8	64	1.43
40054305--40054340	18	2.0	18	100	0	72	33	27	0	38	1.57
40060710--40060753	23	1.9	23	85	0	61	50	27	6	15	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40061420--40061532	43	2.7	43	80	12	117	34	25	15	24	1.94
40072283--40072394	48	2.3	48	85	0	161	25	16	28	29	1.97
40078018--40078519	40	12.6	40	84	4	511	24	20	27	26	1.99
40085991--40086036	20	2.3	20	82	14	60	28	28	17	26	1.98
40086003--40086046	19	2.2	20	84	4	54	34	25	18	22	1.96
40089398--40090080	177	3.9	176	84	5	833	28	24	18	28	1.98
40090409--40090536	64	2.0	64	96	0	238	36	14	18	29	1.91
40091612--40091669	30	1.9	30	82	0	71	8	5	8	77	1.11
40092212--40092239	12	2.3	12	100	0	56	0	21	0	78	0.75
40092213--40092267	28	2.0	28	81	0	65	3	14	3	78	1.03
40092206--40092269	12	5.5	12	75	3	51	3	12	6	78	1.06
40108422--40108508	44	2.0	44	93	0	147	39	12	19	28	1.88
40111247--40111317	28	2.5	28	93	4	117	38	9	23	28	1.87
40112389--40112457	26	2.7	26	97	0	129	37	2	5	53	1.40
40115147--40115187	20	2.0	20	100	0	82	31	4	9	53	1.55
40120049--40120075	14	1.9	14	100	0	54	55	14	0	29	1.40
40130634--40130669	18	2.0	18	94	0	63	27	2	22	47	1.65
40130901--40130964	21	3.3	19	70	18	51	50	1	3	45	1.27
40131049--40131096	25	1.9	25	86	0	69	33	29	2	35	1.69
40139950--40140169	40	5.6	40	80	5	241	25	25	23	25	2.00
40143308--40143359	21	2.5	21	79	17	63	32	5	32	28	1.81
40143808--40143841	17	2.0	17	88	0	50	20	8	11	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40158943--40158979	19	1.9	19	89	10	58	59	18	0	21	1.38
40165586--40165616	16	1.9	16	93	0	53	35	22	0	41	1.54
40165583--40165622	20	2.0	20	85	0	53	37	22	0	40	1.54
40165852--40166058	55	3.8	54	81	5	247	23	25	17	34	1.96
40173725--40173808	15	5.8	14	79	5	78	58	16	15	9	1.62
40173736--40173812	15	5.2	15	76	9	86	57	15	15	11	1.66
40173725--40173812	29	3.0	29	78	8	88	57	15	15	10	1.64
40173725--40173808	44	1.9	43	87	2	123	58	16	15	9	1.62
40176732--40176903	93	1.8	93	94	0	308	27	29	21	21	1.99
40176724--40176899	46	3.8	46	81	10	223	28	28	21	21	1.98
40178637--40178729	7	13.1	7	77	6	80	18	0	39	41	1.50
40178636--40178729	15	6.6	15	69	12	65	18	0	40	41	1.50
40179361--40179412	14	3.8	13	77	12	52	59	3	1	34	1.27
40184164--40184500	43	7.9	43	85	3	439	25	16	28	29	1.97
40184166--40184500	85	3.9	85	85	1	440	25	17	28	29	1.97
40186907--40186966	31	1.9	31	100	0	120	46	25	1	26	1.62
40187954--40188110	43	3.7	43	78	6	158	31	26	16	26	1.97
40187954--40188111	84	1.9	84	85	2	219	31	25	16	25	1.96
40190799--40190990	95	2.0	95	98	0	375	41	5	39	13	1.68
40191900--40191936	19	2.0	18	94	5	65	18	16	37	27	1.92
40192005--40192119	29	4.1	28	76	5	99	28	14	29	26	1.95
40195871--40195901	15	2.1	15	93	0	53	54	25	0	19	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40219958--40220000	22	1.9	23	90	4	70	20	2	53	23	1.57
40220032--40220099	34	2.0	34	82	5	84	29	20	22	27	1.98
40225720--40225979	47	5.6	44	75	13	167	28	17	29	25	1.98
40225761--40225979	45	4.8	46	74	10	137	27	17	30	24	1.97
40248495--40248566	37	2.0	34	81	7	81	5	37	1	55	1.32
40254232--40254270	12	3.2	12	88	3	51	46	2	0	51	1.14
40259078--40259115	18	2.2	16	90	9	58	28	0	23	47	1.52
40261387--40261515	40	3.3	39	82	3	150	12	15	29	42	1.83
40268183--40268222	21	1.9	21	94	0	71	32	15	12	40	1.84
40272317--40272492	46	3.8	45	78	11	205	21	21	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295