genome.fa.s2.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  130  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44574222--44574300	39	2.0	39	97	0	149	27	21	22	27	1.99
44576179--44576362	40	4.7	40	87	6	250	26	27	21	23	1.99
44576146--44576362	79	2.7	81	83	8	252	26	27	21	25	1.99
44578971--44578997	14	1.9	14	100	0	54	62	14	0	22	1.31
44583762--44583822	25	2.5	24	82	10	70	29	13	14	42	1.84
44592550--44592587	15	2.5	15	100	0	76	21	15	34	28	1.94
44603442--44603466	13	1.9	13	100	0	50	20	24	40	16	1.91
44615413--44616081	49	13.9	49	93	3	1132	32	8	29	30	1.86
44615413--44616081	96	7.0	94	93	3	1095	32	8	29	30	1.86
44615806--44615888	27	3.3	27	60	16	68	33	3	27	34	1.75
44627055--44627087	13	2.4	14	90	5	50	63	12	0	24	1.28
44628383--44628597	43	5.0	43	87	1	272	32	27	15	23	1.95
44631848--44631909	18	3.4	18	80	8	81	50	4	17	27	1.67
44632955--44633054	50	2.0	50	100	0	200	32	18	16	34	1.92
44657481--44657530	24	2.1	24	100	0	100	30	32	4	34	1.76
44659388--44659441	24	2.2	24	84	12	67	29	38	16	14	1.89
44671387--44671511	28	4.5	28	72	7	101	31	15	27	26	1.96
44671412--44671536	56	2.2	56	95	0	223	36	12	25	26	1.91
44671440--44671536	28	3.5	28	73	5	97	39	11	24	24	1.88
44675581--44675623	19	2.2	20	87	4	61	41	20	0	37	1.53
44681757--44681791	17	2.1	17	100	0	70	40	0	11	48	1.39
44682632--44682749	44	2.7	43	79	7	123	23	13	27	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44685919--44685991	34	2.2	33	90	7	112	28	23	21	26	1.99
44685936--44686015	34	2.4	34	87	4	108	23	25	26	25	2.00
44693619--44693691	34	2.2	34	85	7	96	30	23	19	27	1.98
44695888--44695980	26	3.6	26	86	0	132	26	24	25	22	2.00
44696097--44696130	16	2.1	16	100	0	68	26	17	11	44	1.83
44696472--44696571	45	2.2	46	85	8	152	27	24	7	42	1.80
44704163--44704225	26	2.4	26	86	0	90	19	9	33	38	1.84
44705586--44705747	87	1.9	86	85	3	227	27	16	22	34	1.95
44710779--44710845	30	2.2	30	89	0	98	25	22	20	31	1.98
44712548--44712730	79	2.3	81	83	7	223	24	27	22	24	2.00
44712527--44712730	40	5.1	40	81	8	229	24	27	22	25	2.00
44720741--44720925	40	4.7	40	80	6	207	25	27	22	24	2.00
44733224--44733259	18	2.0	18	89	10	56	27	27	0	44	1.55
44737434--44737474	15	2.9	14	82	17	50	29	36	7	26	1.83
44739656--44739694	17	2.3	17	90	0	60	41	0	0	58	0.98
44739654--44739707	10	5.7	10	80	12	69	38	1	0	59	1.08
44741061--44741300	46	5.1	46	79	11	220	26	18	30	23	1.98
44741065--44741300	94	2.5	94	83	6	282	26	19	30	23	1.98
44752855--44752880	13	2.0	13	100	0	52	53	23	0	23	1.46
44755160--44755300	55	2.6	55	79	0	174	29	32	25	12	1.93
44759619--44759681	30	2.1	30	82	11	76	53	0	15	30	1.42
44760702--44760740	19	2.2	18	86	9	53	41	5	17	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44762040--44762564	260	2.0	260	98	0	1023	32	11	18	37	1.86
44768232--44768369	73	1.9	73	92	0	231	25	31	20	23	1.98
44769987--44770017	15	2.1	15	93	0	53	58	9	6	25	1.54
44770609--44770638	13	2.4	12	94	5	51	0	23	0	76	0.78
44777223--44777369	64	2.2	66	81	8	163	31	17	28	22	1.96
44777172--44777430	68	3.9	64	76	8	202	29	15	29	25	1.96
44780304--44780529	49	4.7	49	78	9	171	26	20	28	23	1.99
44780255--44780481	98	2.4	97	81	7	250	27	20	29	22	1.99
44788066--44788188	46	2.7	44	81	7	131	28	17	29	24	1.98
44788213--44788390	49	3.7	49	76	6	161	24	20	28	26	1.99
44792244--44792858	307	2.0	307	86	3	873	43	15	10	31	1.80
44794568--44794593	13	2.0	13	100	0	52	38	7	7	46	1.61
44795045--44795116	26	2.8	26	84	0	90	34	29	2	33	1.72
44795814--44795876	28	2.2	28	100	0	126	20	17	22	39	1.92
44799697--44799747	24	2.1	24	96	0	93	31	19	7	41	1.80
44803146--44803178	17	1.9	17	93	0	57	39	0	0	60	0.97
44803123--44803256	58	2.4	57	80	8	150	44	1	3	50	1.29
44803611--44803644	13	2.6	13	90	0	50	58	0	2	38	1.13
44804185--44804217	17	1.9	17	88	11	50	39	0	0	60	0.97
44805297--44805325	15	1.9	15	100	0	58	13	6	0	79	0.93
44810595--44810642	15	3.3	15	77	14	55	58	2	0	39	1.10
44817100--44817222	48	2.6	48	84	2	149	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44818871--44818942	36	2.0	36	91	0	117	43	8	26	22	1.81
44821906--44822053	65	2.3	65	85	0	197	29	22	16	30	1.96
44823620--44823649	13	2.3	13	94	0	51	20	13	20	46	1.83
44828623--44828751	65	2.0	65	84	0	168	26	20	20	33	1.97
44828781--44828830	24	2.0	26	84	7	68	28	20	18	34	1.95
44835148--44835370	46	4.8	46	87	2	286	22	22	13	41	1.88
44837211--44837266	11	4.9	11	76	8	58	62	5	0	32	1.18
44844070--44844099	15	2.0	15	100	0	60	73	0	0	26	0.84
44850286--44850348	31	2.0	31	93	0	108	34	11	26	26	1.90
44853922--44853949	11	2.5	11	100	0	56	57	0	7	35	1.26
44855010--44855072	31	2.0	31	96	0	117	34	12	26	25	1.92
44858642--44858669	11	2.5	11	100	0	56	57	0	7	35	1.26
44859730--44859792	31	2.0	31	96	0	117	34	12	26	25	1.92
44862701--44862747	23	2.0	23	95	0	85	19	4	25	51	1.65
44868165--44868211	21	2.2	22	92	3	78	21	38	19	21	1.94
44872248--44872324	31	2.5	31	85	6	95	32	11	9	46	1.72
44881553--44881631	37	2.1	37	88	0	113	25	30	18	25	1.98
44881750--44882148	47	8.4	47	89	2	564	28	30	9	31	1.89
44885118--44885154	15	2.6	15	87	8	51	59	0	10	29	1.31
44888077--44888215	74	1.9	75	89	1	217	25	20	21	31	1.98
44888093--44888245	74	2.1	75	81	3	175	28	20	19	32	1.97
44892040--44892097	29	2.0	29	100	0	116	31	27	6	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44897866--44899027	396	2.9	396	87	2	1618	30	19	15	34	1.93
44905927--44905961	14	2.6	13	86	8	52	34	0	2	62	1.10
44909083--44909131	26	2.0	26	88	8	75	30	0	6	63	1.19
44909498--44909584	43	2.0	43	100	0	174	44	9	9	36	1.68
44919019--44919086	29	2.3	29	85	5	93	27	30	13	27	1.94
44918908--44919235	174	1.9	174	96	0	611	30	24	14	30	1.95
44919188--44919266	29	2.7	30	82	13	110	29	30	15	25	1.96
44921886--44921995	40	2.8	40	80	0	121	36	20	18	25	1.94
44921906--44922024	40	2.7	46	72	15	133	33	21	18	26	1.96
44922103--44922269	79	2.1	80	90	6	259	32	21	19	25	1.97
44922103--44922269	40	4.2	40	89	3	248	32	21	19	25	1.97
44922351--44922442	40	2.3	40	88	1	130	28	17	21	32	1.96
44923281--44923357	7	11.0	7	70	5	57	41	35	2	20	1.66
44923282--44923357	21	3.6	21	76	13	84	42	34	2	21	1.67
44923280--44923366	14	6.2	14	74	2	59	39	39	2	19	1.64
44923375--44923445	37	1.9	37	82	0	88	50	25	0	23	1.49
44923822--44924624	336	2.4	337	87	2	1114	28	17	19	33	1.95
44926164--44926210	24	2.0	24	95	0	85	29	19	8	42	1.80
44926442--44926472	14	2.2	14	100	0	62	38	25	6	29	1.81
44926491--44926792	165	1.8	164	97	0	568	32	9	6	50	1.61
44926822--44926867	9	5.2	9	77	12	51	56	2	0	41	1.11
44926820--44926864	15	3.2	15	75	18	51	55	2	0	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44926866--44926891	9	2.9	9	100	0	52	53	23	0	23	1.46
44926875--44927141	43	6.4	43	85	9	329	47	17	1	34	1.55
44926820--44927133	77	3.9	77	83	9	360	48	14	0	35	1.51
44926884--44927100	120	1.8	120	92	0	371	47	16	0	34	1.53
44927001--44927146	9	16.7	9	70	13	83	44	18	2	34	1.62
44931561--44931779	40	5.5	40	94	2	363	26	26	23	22	2.00
44931561--44931779	79	2.8	80	92	2	363	26	26	23	22	2.00
44931561--44931779	119	1.8	119	92	3	370	26	26	23	22	2.00
44936597--44936899	86	3.5	85	81	3	313	23	20	26	30	1.98
44936605--44936861	43	6.0	43	80	6	252	22	20	27	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295