genome.fa.s2.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  169  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57748865--57748951	27	3.2	27	84	9	115	34	25	22	17	1.96
57748681--57749042	184	2.0	184	96	1	672	33	25	17	23	1.96
57749057--57749130	28	2.8	26	85	4	85	31	8	22	37	1.84
57750572--57750679	26	4.2	26	93	0	189	36	24	7	32	1.83
57762096--57762276	50	3.6	48	77	5	164	29	25	19	25	1.98
57775324--57775374	25	2.0	25	92	0	84	35	23	15	25	1.94
57775414--57775452	10	3.8	10	93	6	69	33	17	17	30	1.94
57775413--57775452	21	1.9	21	100	0	80	35	17	17	30	1.93
57775499--57775568	25	2.8	25	97	0	131	24	25	24	25	2.00
57775499--57775593	50	1.9	50	82	8	122	26	24	24	25	2.00
57775789--57775870	31	2.7	31	88	3	123	37	17	21	23	1.93
57784737--57784857	46	2.6	47	85	3	147	23	14	28	33	1.94
57790302--57790365	31	2.1	31	100	0	128	35	15	28	20	1.93
57790728--57790952	40	5.6	40	84	3	299	24	22	26	26	2.00
57790728--57790952	83	2.8	80	89	4	353	24	22	26	26	2.00
57798807--57799031	40	5.6	40	84	3	290	22	22	28	26	1.99
57798807--57799031	83	2.8	80	88	4	344	22	22	28	26	1.99
57801264--57801434	43	4.0	43	86	1	236	25	20	30	23	1.98
57804468--57804671	50	4.1	50	79	6	232	31	25	17	25	1.97
57805635--57805726	39	2.4	39	80	5	98	25	30	25	19	1.98
57805700--57805819	39	3.1	39	92	0	186	26	30	20	22	1.99
57811684--57811779	48	2.0	48	95	0	174	36	19	9	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57815904--57816274	27	13.8	27	92	0	519	31	21	6	40	1.78
57817571--57817742	46	3.7	46	78	6	186	22	20	28	28	1.99
57817561--57817734	93	1.9	93	91	2	287	22	21	28	27	1.99
57819044--57819104	27	2.3	27	85	0	86	27	24	6	40	1.80
57819408--57819471	33	2.0	32	84	3	83	20	23	20	35	1.96
57819433--57819491	27	2.2	26	84	3	73	22	23	18	35	1.96
57819611--57819809	6	32.3	6	68	16	113	20	16	14	48	1.81
57819621--57819678	19	3.4	19	65	30	58	18	17	17	46	1.84
57819611--57819783	31	5.6	31	90	0	265	20	16	15	47	1.82
57832909--57832968	27	2.3	26	85	2	75	35	20	23	21	1.96
57833321--57833377	11	5.7	11	73	23	63	8	36	22	31	1.85
57833313--57833377	19	3.4	19	97	0	121	9	36	23	30	1.86
57840474--57840516	8	5.0	8	84	15	59	11	34	23	30	1.90
57840480--57840518	19	2.1	19	100	0	78	10	30	20	38	1.86
57844148--57844205	15	3.9	15	71	8	55	17	15	8	58	1.61
57845718--57845750	13	2.6	13	90	4	50	48	12	0	39	1.40
57847252--57847290	17	2.3	17	100	0	78	28	0	33	38	1.57
57856577--57856685	37	2.9	37	90	0	173	26	29	19	24	1.98
57856831--57857015	48	3.8	48	89	4	282	30	26	6	36	1.82
57856831--57857014	98	1.9	98	91	4	302	29	26	6	36	1.82
57856937--57857178	47	5.1	47	86	2	272	26	28	10	33	1.90
57857100--57857179	25	3.3	25	63	16	60	31	27	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57862222--57862378	43	3.7	43	75	9	149	31	28	15	23	1.96
57875426--57875500	22	3.4	22	80	9	82	30	25	30	13	1.94
57877281--57877408	47	2.7	46	82	7	141	24	16	27	32	1.96
57881924--57881991	24	2.9	23	80	8	68	51	20	14	13	1.76
57883843--57883918	38	2.0	38	100	0	152	31	13	23	31	1.93
57886931--57887025	28	3.4	28	89	2	129	27	12	27	32	1.93
57886959--57887041	27	3.0	27	85	5	78	31	12	24	32	1.91
57888617--57888761	40	3.6	40	85	4	193	25	24	26	23	2.00
57891459--57891518	31	1.9	31	100	0	120	41	8	13	36	1.74
57892853--57893081	27	8.6	27	78	5	214	39	20	9	30	1.84
57892853--57893080	81	2.8	80	83	1	269	39	20	9	30	1.83
57893091--57893264	81	2.1	81	81	4	190	35	20	7	36	1.81
57892853--57893326	27	17.6	27	72	5	142	37	20	9	32	1.84
57893315--57893460	54	2.7	54	86	0	202	35	21	19	23	1.96
57893319--57893477	27	6.0	26	80	4	158	34	18	21	25	1.96
57893897--57893954	19	3.4	19	65	30	58	18	18	17	44	1.87
57893909--57893996	6	14.3	6	74	17	74	19	20	14	45	1.85
57893897--57893996	31	3.2	31	91	4	157	19	20	15	46	1.85
57895958--57896267	27	11.6	27	77	7	283	39	20	10	30	1.85
57896279--57896393	27	4.3	27	85	0	149	32	18	8	40	1.81
57896399--57896485	27	3.2	27	83	0	111	41	22	8	27	1.82
57896277--57896450	81	2.1	81	84	0	222	35	18	8	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57896399--57896515	27	4.3	27	81	0	108	37	22	10	29	1.87
57896496--57896637	27	5.3	27	87	0	178	32	19	22	26	1.97
57896443--57896636	54	3.6	54	80	6	180	33	19	19	27	1.96
57897057--57897154	31	3.2	31	89	0	142	21	18	13	46	1.82
57897076--57897163	6	14.3	6	73	17	65	20	18	13	47	1.82
57900415--57900446	17	1.9	17	93	6	57	18	18	0	62	1.33
57904087--57904186	42	2.4	42	81	3	121	31	13	26	30	1.93
57907162--57907287	46	2.7	46	88	0	189	22	20	26	30	1.98
57907497--57907534	19	2.0	20	85	15	53	36	0	23	39	1.55
57909104--57909328	50	4.6	49	77	9	162	25	29	19	25	1.98
57909095--57909328	98	2.4	94	77	8	247	25	29	18	26	1.98
57909095--57909345	99	2.6	97	75	11	255	25	29	18	26	1.98
57909298--57909514	46	4.7	45	76	8	143	23	29	17	29	1.97
57910700--57910866	46	3.7	46	85	4	155	25	28	18	28	1.98
57910743--57910869	46	2.8	46	92	0	209	22	30	19	26	1.98
57913895--57913991	50	1.9	50	87	4	142	25	29	17	26	1.97
57914114--57914178	34	1.9	34	90	0	103	43	20	10	26	1.84
57914245--57914520	27	10.2	28	81	7	163	30	9	22	38	1.85
57914244--57914513	81	3.3	81	77	7	287	30	8	21	39	1.84
57914245--57914520	54	5.1	55	75	9	255	30	9	22	38	1.85
57930023--57930051	12	2.3	13	94	5	51	20	6	6	65	1.40
57932949--57932988	20	2.0	20	100	0	80	40	20	20	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57936120--57936303	40	4.6	40	82	6	196	23	20	27	28	1.99
57936120--57936300	80	2.3	81	83	9	221	23	20	27	27	1.99
57936188--57936350	40	4.1	39	82	7	141	26	19	26	26	1.99
57950451--57950483	16	1.9	18	88	11	52	27	18	15	39	1.90
57956216--57956383	40	4.2	40	83	4	106	25	27	23	23	2.00
57956239--57956383	40	3.6	40	85	4	193	23	26	24	25	2.00
57957570--57957645	38	2.0	38	100	0	152	31	23	13	31	1.93
57964159--57964338	40	4.6	40	82	2	105	23	26	24	25	2.00
57964194--57964338	40	3.6	40	85	4	193	23	26	24	25	2.00
57965538--57965588	25	2.0	26	96	3	95	45	11	19	23	1.83
57977705--57977735	15	2.1	15	93	0	53	35	16	12	35	1.87
57982814--57983084	54	5.0	53	79	5	267	25	12	19	42	1.87
57982814--57983077	81	3.3	79	83	6	298	26	12	19	42	1.86
57982805--57983073	27	10.0	27	81	7	242	26	12	18	42	1.86
57983396--57983460	18	4.0	18	68	25	63	20	21	13	44	1.86
57986755--57986796	22	2.0	21	85	4	57	38	16	16	28	1.91
57987959--57988086	48	2.6	48	82	3	159	24	13	31	31	1.93
57989814--57989843	16	1.9	15	93	6	51	83	6	0	10	0.81
57991540--57991583	23	1.9	23	86	9	63	75	0	13	11	1.06
57993233--57993389	43	3.7	43	76	8	131	26	16	23	33	1.96
57993285--57993389	42	2.5	42	81	4	122	24	19	23	32	1.97
57996004--57996224	110	2.0	111	91	0	363	29	14	23	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58001021--58001291	46	5.9	46	88	0	328	39	14	23	22	1.91
58001577--58001609	17	2.0	17	94	5	59	48	0	15	36	1.45
58007445--58007605	43	3.8	44	70	19	110	26	16	23	33	1.96
58009211--58009304	47	2.0	47	100	0	188	42	12	12	31	1.81
58009655--58009734	40	2.0	41	82	2	99	32	22	12	32	1.91
58013312--58013336	3	8.3	3	100	0	50	68	0	0	32	0.90
58018231--58018289	24	2.5	24	91	5	93	13	18	25	42	1.87
58031842--58032003	26	6.5	26	72	13	110	21	20	17	40	1.92
58031954--58032010	26	2.2	26	90	6	89	17	19	19	43	1.88
58034037--58034143	52	2.1	52	100	0	214	27	19	3	49	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295