genome.fa.s2.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  143  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48714050--48714168	55	2.2	54	79	8	125	23	25	26	25	2.00
48718480--48718560	33	2.4	34	77	8	94	28	18	23	29	1.98
48718480--48718573	32	2.9	30	73	12	71	26	20	25	27	1.99
48726102--48726130	14	2.0	15	93	6	51	31	6	13	48	1.69
48729201--48729372	40	4.3	40	84	5	233	26	27	19	26	1.99
48729201--48729372	79	2.2	80	92	3	285	26	27	19	26	1.99
48729201--48729423	119	1.9	120	82	6	283	26	26	20	26	1.99
48736985--48737202	79	2.7	78	82	6	258	26	26	20	26	1.99
48736985--48737207	119	1.9	120	83	6	292	26	26	21	26	1.99
48736966--48737209	40	6.1	40	79	6	255	25	26	21	26	1.99
48746832--48747020	33	5.8	33	78	6	143	39	17	22	20	1.93
48746870--48747050	97	1.9	97	81	2	220	39	18	22	20	1.93
48746835--48747050	64	3.3	65	76	8	183	39	17	21	21	1.92
48748503--48748697	101	1.9	101	83	6	252	34	20	10	34	1.87
48750978--48751152	46	3.8	45	78	7	199	29	29	20	21	1.98
48750986--48751157	93	1.8	93	93	0	299	28	29	20	20	1.98
48750983--48751172	46	4.1	44	69	18	118	29	28	20	21	1.98
48753543--48753631	30	3.0	30	79	8	92	56	15	16	11	1.67
48753543--48753622	15	5.4	15	77	7	83	57	13	17	11	1.65
48753554--48753631	15	5.2	15	77	9	70	55	15	16	12	1.70
48756562--48756733	93	1.8	93	90	2	274	29	28	19	22	1.98
48756554--48756723	46	3.7	45	77	10	191	31	28	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48760680--48760808	47	2.7	47	87	0	186	32	7	31	27	1.85
48760927--48761005	37	2.1	37	90	0	122	24	18	31	25	1.98
48769046--48769137	42	2.2	42	78	5	96	29	21	20	28	1.98
48788536--48788702	39	4.3	39	92	3	273	20	26	20	31	1.98
48793635--48793700	30	2.2	30	94	0	114	28	28	22	19	1.98
48796311--48796335	5	5.0	5	100	0	50	40	0	0	60	0.97
48812606--48812821	46	4.6	44	79	11	159	25	29	18	27	1.98
48817431--48817510	27	2.9	28	81	3	90	35	18	23	22	1.96
48828782--48828908	46	2.7	46	84	4	157	22	28	18	29	1.98
48831993--48832023	16	1.9	16	93	0	53	35	22	0	41	1.54
48831990--48832029	20	2.0	20	85	0	53	37	22	0	40	1.54
48832216--48832406	55	3.6	53	79	9	160	21	24	17	37	1.94
48838883--48839082	46	4.3	47	74	10	162	28	19	21	31	1.97
48840693--48840870	27	6.6	27	79	3	115	28	28	16	26	1.97
48840693--48840870	54	3.3	55	80	10	204	28	28	16	26	1.97
48840714--48840869	82	1.9	81	85	3	215	28	28	16	26	1.97
48848791--48848968	27	6.6	27	79	3	115	28	28	16	26	1.97
48848791--48848968	54	3.3	55	80	10	204	28	28	16	26	1.97
48848812--48848967	82	1.9	81	85	3	215	28	28	16	26	1.97
48852502--48853010	48	10.8	48	82	5	581	18	17	27	36	1.94
48872211--48872464	27	9.5	26	81	8	228	39	18	9	31	1.84
48872190--48872463	53	5.1	53	83	4	295	39	18	9	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48872190--48872463	80	3.4	80	79	9	274	39	18	9	31	1.84
48872519--48872977	27	17.0	27	85	0	551	36	18	20	23	1.95
48872519--48872959	81	5.4	81	87	1	614	36	19	20	23	1.95
48873582--48873650	27	2.6	26	86	4	93	20	24	17	37	1.93
48873770--48873832	6	10.3	6	74	16	58	17	19	14	49	1.80
48875276--48875363	39	2.2	40	78	13	101	29	23	22	23	1.99
48878734--48878794	27	2.3	27	82	0	77	39	21	6	32	1.79
48878797--48879227	27	16.0	27	86	0	533	36	19	19	24	1.95
48879214--48879266	27	2.0	27	84	0	70	22	16	20	39	1.92
48878797--48879227	81	5.3	81	87	2	591	36	19	19	24	1.95
48879671--48879719	22	2.2	22	85	7	64	22	28	22	26	1.99
48879870--48879958	26	3.4	26	83	4	90	19	22	17	40	1.91
48880075--48880162	6	14.3	6	72	17	65	20	19	12	47	1.81
48880078--48880141	25	2.6	25	89	0	92	20	21	12	45	1.84
48882181--48882363	27	6.8	27	85	0	231	32	14	16	35	1.90
48882344--48882444	27	3.7	27	75	7	89	39	22	15	21	1.92
48882357--48882471	27	4.3	27	78	0	104	41	20	17	20	1.90
48882357--48882471	54	2.1	54	86	0	167	41	20	17	20	1.90
48882861--48882959	34	2.9	34	86	0	126	26	19	25	29	1.98
48885161--48885621	48	9.6	48	86	2	595	18	16	29	35	1.93
48900522--48900926	47	8.6	47	93	1	657	29	29	8	33	1.86
48900572--48900650	25	3.3	25	64	16	67	31	27	6	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48904895--48905086	40	4.8	40	90	0	285	25	28	22	24	2.00
48906499--48906903	47	8.6	47	95	1	684	28	29	8	33	1.86
48906549--48906627	25	3.3	25	66	16	76	31	29	5	34	1.79
48910337--48910385	25	2.0	25	87	0	71	42	22	16	18	1.88
48917732--48917791	27	2.3	27	85	2	77	21	23	20	35	1.96
48927156--48927265	39	2.8	40	81	5	125	28	27	17	27	1.97
48927095--48927265	79	2.2	79	81	6	186	26	26	18	27	1.98
48939230--48939283	26	2.1	26	100	0	108	35	24	11	29	1.90
48939389--48939536	40	3.7	40	85	6	210	27	27	22	22	1.99
48945727--48945938	40	5.3	41	82	5	265	23	20	28	27	1.99
48945731--48945938	80	2.6	80	91	0	328	23	20	28	27	1.99
48953765--48953976	40	5.3	40	80	5	250	24	20	27	27	1.99
48953769--48953977	80	2.6	80	90	0	312	24	20	27	27	1.99
48956561--48956907	46	7.7	47	87	10	510	31	8	27	31	1.88
48956562--48956882	84	3.6	90	86	9	453	32	9	27	31	1.88
48956561--48956907	131	2.5	135	84	10	476	31	8	27	31	1.88
48957020--48957089	35	2.0	36	85	2	97	22	18	31	27	1.97
48958955--48959057	43	2.4	43	100	0	206	22	15	35	26	1.94
48959039--48959112	29	2.6	29	89	4	105	25	16	32	25	1.96
48959425--48959783	40	8.9	40	82	5	359	25	22	27	24	2.00
48959425--48959778	122	2.9	122	82	5	416	25	22	27	24	2.00
48959946--48960000	25	2.2	25	77	6	58	32	10	29	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48963280--48963579	47	6.3	47	94	3	512	31	9	30	30	1.88
48963280--48963579	96	3.1	96	95	2	534	31	9	30	30	1.88
48963280--48963579	143	2.1	141	93	4	512	31	9	30	30	1.88
48963560--48963598	19	2.1	19	100	0	78	20	20	38	20	1.94
48963736--48963814	37	2.1	37	90	0	122	24	18	31	25	1.98
48969763--48969947	40	4.6	40	89	5	277	27	27	21	23	1.99
48983310--48983436	65	2.0	65	96	0	236	29	14	18	37	1.90
48991877--48991926	24	2.0	25	81	11	59	8	36	2	54	1.42
48994153--48994371	45	5.0	45	88	3	313	24	22	26	26	2.00
48994153--48994371	89	2.5	90	85	5	313	24	22	26	26	2.00
48994846--48994878	16	1.9	18	88	11	52	18	12	18	51	1.76
48998966--48999511	47	11.6	47	95	0	957	32	8	29	29	1.87
48999361--48999436	22	3.3	22	64	10	62	28	10	31	28	1.90
48999636--48999731	37	2.6	37	93	0	156	21	17	31	29	1.96
49004783--49004821	15	2.6	15	91	0	60	64	2	28	5	1.28
49006697--49006755	30	2.0	30	82	0	73	42	5	20	32	1.74
49007351--49007375	13	1.9	13	100	0	50	16	4	8	72	1.24
49007574--49007914	50	6.8	50	78	6	312	25	18	24	31	1.97
49007573--49007855	101	2.8	101	88	0	397	26	18	24	31	1.97
49010237--49010454	40	5.5	40	86	2	289	25	25	22	25	2.00
49013181--49013218	15	2.5	15	82	0	58	34	34	28	2	1.71
49018980--49019197	40	5.5	40	85	6	275	26	27	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49021140--49021208	27	2.6	27	90	4	104	33	28	11	26	1.91
49023383--49023599	40	5.5	40	86	5	264	23	22	27	26	2.00
49029331--49029368	15	2.5	15	82	0	58	2	28	34	34	1.71
49036725--49036890	39	4.2	39	93	3	271	25	27	22	24	2.00
49036725--49036890	79	2.1	79	92	4	273	25	27	22	24	2.00
49045224--49045321	27	3.5	28	88	5	128	32	28	13	25	1.93
49050677--49050738	27	2.3	27	88	0	88	30	11	16	41	1.83
49050689--49051053	27	13.7	27	72	12	213	31	9	20	38	1.85
49050717--49051053	53	6.3	54	78	6	357	31	9	20	38	1.85
49051371--49051490	28	4.3	28	90	0	168	29	36	13	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295