genome.fa.s2.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  127  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43578660--43579188	208	2.6	204	84	6	674	24	1	14	59	1.41
43579473--43579502	12	2.5	12	94	0	51	6	3	13	76	1.11
43583242--43583290	25	1.9	26	84	12	66	57	10	4	28	1.50
43583768--43583835	33	2.1	33	100	0	136	30	13	14	41	1.84
43583772--43583851	33	2.6	32	86	7	85	30	11	13	45	1.79
43586929--43586987	31	1.9	31	92	0	100	37	11	8	42	1.72
43590822--43590934	43	2.6	42	80	5	111	23	18	26	30	1.98
43593183--43593220	19	2.1	18	90	5	58	57	5	0	36	1.21
43594283--43594344	18	3.6	18	78	8	58	54	0	0	45	0.99
43594288--43594339	18	2.7	20	76	11	63	51	0	0	48	1.00
43595132--43595177	10	4.5	10	83	5	65	13	26	19	41	1.88
43596655--43596679	11	2.3	11	100	0	50	48	0	8	44	1.32
43596847--43596883	18	2.1	18	89	0	56	45	18	8	27	1.77
43603347--43603405	31	2.0	29	87	12	84	37	0	6	55	1.26
43604439--43604485	6	7.7	6	85	4	58	14	19	17	48	1.81
43608416--43608463	17	2.9	17	81	3	62	45	12	20	20	1.83
43609550--43609583	18	1.9	18	88	5	52	61	2	8	26	1.40
43610328--43610389	27	2.3	26	78	8	70	51	11	0	37	1.38
43611977--43612048	15	5.0	14	83	13	67	80	0	1	18	0.78
43611989--43612046	5	12.4	5	79	17	63	82	0	1	15	0.74
43611982--43612046	22	3.1	21	84	4	87	81	0	1	16	0.77
43611977--43612045	9	7.9	9	83	13	74	81	0	1	17	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43611977--43612047	23	3.1	22	73	16	65	81	0	1	16	0.76
43615712--43615773	27	2.3	26	78	8	70	51	11	0	37	1.38
43624976--43625169	102	1.9	102	94	0	343	37	15	20	26	1.93
43629212--43629244	17	2.1	16	88	11	50	30	0	0	69	0.88
43629290--43629348	21	2.8	22	80	7	61	22	0	8	69	1.15
43629319--43629367	26	2.0	26	88	8	75	30	0	6	63	1.19
43629522--43629562	16	2.6	16	96	0	73	12	58	29	0	1.34
43636013--43636083	25	2.8	25	86	0	79	39	23	12	23	1.89
43637209--43637625	46	8.8	48	70	16	205	27	17	29	26	1.97
43637209--43637518	46	6.6	46	75	13	217	28	17	29	25	1.97
43643797--43643859	21	3.0	21	80	0	72	26	33	11	28	1.91
43646447--43646524	37	2.1	37	92	0	129	43	25	12	17	1.85
43649350--43649386	15	2.4	16	86	8	51	59	0	8	32	1.27
43667369--43667445	21	3.7	21	91	0	118	16	33	33	15	1.91
43667858--43667918	20	3.0	20	72	11	61	42	16	24	16	1.88
43667850--43667918	20	3.5	19	70	16	50	42	14	24	18	1.88
43668838--43668931	42	2.2	42	98	0	179	22	34	29	13	1.93
43687899--43687954	26	2.2	26	100	0	112	35	26	7	30	1.83
43693352--43693401	25	2.0	26	84	4	66	24	14	24	38	1.92
43694890--43694971	26	3.2	26	96	0	155	36	26	6	30	1.81
43695346--43695375	15	2.0	15	100	0	60	33	6	13	46	1.69
43699919--43700054	38	3.5	38	85	4	166	33	25	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43701586--43701668	31	2.7	31	90	3	134	28	26	14	30	1.95
43701888--43701957	25	2.8	25	88	0	95	27	21	22	28	1.99
43702767--43702844	27	2.9	27	77	11	79	20	19	21	38	1.94
43702885--43702992	27	3.9	28	79	17	111	32	6	19	41	1.77
43702862--43703071	54	3.9	54	76	10	185	30	8	20	39	1.83
43702948--43703099	27	5.7	26	79	6	135	27	9	21	41	1.83
43703107--43703193	27	3.2	27	91	0	138	42	5	21	29	1.76
43703145--43703220	27	2.8	27	83	0	71	36	9	21	32	1.85
43711186--43711308	38	3.2	38	88	2	174	34	26	20	19	1.96
43711218--43711321	38	2.7	37	91	2	154	32	25	22	20	1.97
43717387--43717561	49	3.5	49	82	3	242	29	25	18	26	1.98
43717380--43717566	100	1.9	100	96	0	347	29	25	19	25	1.98
43722464--43722507	21	2.0	22	86	4	63	40	2	20	36	1.65
43723078--43723242	24	6.9	24	66	12	81	20	21	19	38	1.93
43725781--43725964	40	4.6	39	81	9	194	24	22	27	25	2.00
43725833--43725997	79	2.1	79	82	6	192	26	21	27	25	1.99
43730787--43731287	47	10.6	47	92	3	753	33	9	29	27	1.88
43730787--43731287	96	5.3	94	91	4	753	33	9	29	27	1.88
43738000--43738180	40	4.6	40	81	8	183	24	21	27	26	1.99
43738049--43738213	79	2.1	78	81	8	183	25	20	27	26	1.99
43743251--43743278	5	5.6	5	100	0	56	82	0	0	17	0.68
43759025--43759073	25	2.0	25	100	0	98	28	8	18	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43761284--43761364	31	2.6	31	88	1	119	23	27	34	14	1.94
43764603--43764893	27	10.9	27	79	2	300	40	19	8	31	1.81
43764583--43764891	81	3.9	79	82	5	345	41	20	8	30	1.81
43764877--43765558	27	25.3	27	87	0	826	35	18	20	26	1.95
43764583--43764920	161	2.1	160	83	4	423	40	19	9	30	1.83
43765789--43765864	27	2.8	27	84	4	82	22	22	19	35	1.96
43765945--43766018	26	2.8	25	80	8	85	17	18	33	29	1.94
43765877--43766096	104	2.1	104	90	0	350	19	20	30	30	1.97
43766091--43766137	19	2.4	20	78	3	60	10	19	31	38	1.86
43766181--43766253	27	2.7	27	82	4	85	19	21	20	38	1.94
43770778--43770830	27	2.0	27	96	0	97	32	3	20	43	1.70
43771879--43771920	18	2.4	18	80	15	52	14	23	42	19	1.87
43776697--43777015	47	6.7	47	93	2	523	32	8	29	28	1.87
43777134--43777249	37	3.1	37	94	0	196	22	18	32	25	1.97
43779782--43779811	16	1.9	16	93	6	53	36	0	0	63	0.95
43781036--43781379	169	2.0	169	99	0	679	32	12	18	36	1.88
43781339--43781372	18	1.9	18	88	5	52	29	0	5	64	1.17
43782962--43782990	9	3.0	10	90	10	51	0	10	0	89	0.48
43785226--43785256	7	4.4	7	100	0	62	25	0	0	74	0.82
43795988--43796056	33	2.1	33	94	0	120	36	18	5	39	1.75
43805935--43806224	40	7.3	40	95	0	474	26	29	20	23	1.99
43806209--43806286	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43813204--43813235	15	2.1	15	100	0	64	43	25	6	25	1.77
43813969--43814257	40	7.3	40	94	1	465	26	29	20	23	1.99
43814242--43814319	40	1.9	41	82	10	97	26	28	21	23	1.99
43816975--43817051	32	2.4	32	93	0	127	48	5	19	27	1.70
43817001--43817099	31	3.2	30	82	7	108	46	5	21	27	1.72
43820042--43820248	40	5.2	39	75	6	173	22	26	16	33	1.96
43823675--43823884	97	2.2	96	83	3	269	21	22	24	30	1.99
43826735--43826779	23	1.9	24	82	13	58	44	11	26	17	1.82
43834087--43834138	23	2.3	23	82	0	68	17	30	21	30	1.96
43836399--43836443	19	2.5	19	86	10	60	35	13	11	40	1.80
43840712--43840826	29	4.0	29	84	2	126	28	15	27	27	1.96
43845291--43845381	29	3.2	29	80	7	105	26	13	29	30	1.94
43846456--43846490	18	2.0	18	88	5	54	37	20	14	28	1.91
43846968--43847359	196	2.0	195	93	0	676	34	17	16	31	1.93
43851315--43851489	48	3.7	48	79	3	183	29	19	28	22	1.98
43851311--43851484	94	1.9	94	87	0	258	29	18	28	22	1.97
43851461--43851678	98	2.3	93	80	10	230	27	19	27	26	1.99
43857396--43857453	20	2.9	20	94	0	98	37	10	18	32	1.85
43857504--43857576	23	3.1	23	86	3	101	28	17	21	31	1.97
43857503--43857597	24	4.0	24	82	6	113	28	18	23	29	1.98
43862958--43863131	48	3.6	48	84	5	203	29	21	26	22	1.99
43869735--43869946	40	5.3	39	83	5	264	27	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43869735--43869946	80	2.7	80	91	0	345	27	28	20	23	1.99
43877803--43878014	40	5.3	39	83	5	264	27	28	20	23	1.99
43877803--43878014	80	2.7	80	91	0	345	27	28	20	23	1.99
43884788--43884836	25	2.0	25	87	0	71	34	20	16	28	1.94
43884960--43885006	24	2.0	24	83	8	60	31	21	21	25	1.98
43892723--43892783	21	2.9	21	87	0	86	31	9	22	36	1.87
43900051--43900116	13	4.9	13	82	12	71	48	0	16	34	1.47
43900037--43900118	40	2.0	40	85	0	110	45	1	19	34	1.58
43900053--43900115	14	4.6	14	82	11	60	50	0	15	33	1.45
43900049--43900116	27	2.5	26	81	11	75	47	0	17	35	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295