genome.fa.s2.2.7.7.80.10.50.1000.266.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  266  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91241357--91241425	28	2.5	28	83	4	77	28	26	21	23	1.99
91241376--91241436	28	2.2	28	81	0	68	27	29	22	19	1.98
91242877--91242926	23	2.2	22	83	13	66	10	20	0	70	1.16
91243198--91243232	18	2.0	18	88	5	54	22	0	2	74	0.95
91246501--91246549	24	2.0	25	84	4	64	69	2	24	4	1.17
91248219--91248261	18	2.4	18	84	7	52	32	11	20	34	1.89
91255613--91255699	29	3.0	29	94	0	156	29	16	18	35	1.92
91263993--91264119	63	2.0	63	96	0	236	25	11	18	45	1.81
91267065--91267116	23	2.2	24	83	10	72	5	9	3	80	0.99
91270762--91270837	28	2.7	28	81	6	100	38	10	22	28	1.87
91272842--91272953	43	2.6	42	85	5	136	25	16	25	33	1.95
91275032--91275103	28	2.6	28	88	0	108	30	11	11	47	1.74
91275106--91275612	255	2.0	255	97	0	951	26	16	14	42	1.86
91275919--91275952	13	2.6	13	95	0	59	23	11	14	50	1.76
91276444--91276528	16	5.2	16	72	16	59	70	4	21	3	1.21
91276497--91276537	12	3.1	13	86	13	57	73	0	26	0	0.84
91277632--91277945	173	1.8	174	91	3	526	39	5	18	36	1.74
91278020--91278088	31	2.2	31	78	0	75	34	13	13	39	1.83
91286145--91286229	42	2.0	42	82	8	102	16	27	27	29	1.97
91295222--91295257	17	2.2	17	90	5	56	11	16	5	66	1.40
91301015--91301122	5	21.4	5	72	9	76	40	1	17	39	1.60
91301864--91301920	27	2.1	27	96	0	105	52	5	3	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91307203--91307259	29	1.9	30	92	3	98	26	0	3	70	1.03
91307737--91307786	24	2.1	24	85	7	66	18	0	28	54	1.44
91307795--91307846	25	2.1	25	82	7	61	46	1	13	38	1.54
91311167--91311538	128	2.9	129	92	4	621	55	4	4	35	1.40
91312580--91312612	7	4.7	7	100	0	66	57	15	0	27	1.38
91313757--91313799	22	1.9	23	90	4	70	53	4	18	23	1.63
91313790--91313840	11	4.7	10	88	9	66	39	0	33	27	1.57
91325562--91325667	54	2.0	53	85	5	142	15	23	30	31	1.95
91336425--91336468	21	2.1	21	84	16	56	38	11	15	34	1.84
91339311--91339339	14	2.0	15	93	6	51	48	0	6	44	1.29
91339384--91339416	5	6.6	5	96	0	57	33	3	0	63	1.10
91339462--91339494	17	1.9	17	88	11	50	60	0	12	27	1.32
91341687--91341726	19	2.1	19	85	0	53	55	0	5	40	1.22
91346514--91346619	9	11.6	9	87	4	158	33	32	9	24	1.87
91346626--91346686	17	3.4	17	68	12	50	52	13	1	32	1.50
91346643--91346706	20	3.3	20	68	12	62	45	15	4	34	1.67
91346620--91346732	37	3.1	37	94	1	192	47	15	4	32	1.65
91346773--91346831	24	2.5	24	88	0	91	30	25	0	44	1.55
91349896--91349929	16	2.1	16	94	0	59	50	8	0	41	1.34
91350829--91350869	17	2.5	17	92	4	66	24	4	34	36	1.77
91352339--91352374	7	5.0	7	86	6	54	2	0	13	83	0.76
91352939--91353146	63	3.3	62	81	5	211	26	19	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91353527--91353554	2	14.0	2	100	0	56	50	50	0	0	1.00
91354583--91354742	24	6.7	24	73	4	126	21	13	30	33	1.92
91368334--91368458	42	3.0	42	96	0	223	24	32	24	20	1.98
91369340--91369411	25	2.8	25	79	12	58	33	25	23	18	1.97
91369368--91369450	25	3.3	24	79	3	85	38	19	21	20	1.93
91370060--91370101	21	2.0	21	90	0	66	40	14	0	45	1.45
91379854--91379889	17	2.1	17	100	0	72	27	5	22	44	1.75
91380210--91380243	9	3.9	9	88	3	52	52	2	0	44	1.16
91381186--91381244	4	14.8	4	100	0	118	25	0	23	50	1.49
91381280--91381344	12	5.4	12	69	12	53	26	13	18	41	1.88
91381285--91381372	23	3.8	23	80	4	97	28	12	18	40	1.87
91382872--91382905	17	2.0	17	88	0	50	47	0	0	52	1.00
91389152--91389195	17	2.6	17	70	0	52	52	2	2	43	1.26
91390597--91390660	16	4.1	15	74	23	53	48	0	1	50	1.10
91390613--91390654	14	2.9	14	82	3	57	47	0	0	52	1.00
91391284--91391354	35	2.0	35	91	0	115	16	23	30	28	1.97
91393103--91393155	26	2.0	26	100	0	106	47	15	18	18	1.83
91399503--91399535	16	2.1	16	94	0	57	51	3	0	45	1.16
91399514--91399556	22	2.0	22	85	0	59	53	0	0	46	1.00
91399641--91399697	15	3.5	15	71	17	51	49	1	1	47	1.22
91400686--91400897	105	2.0	105	98	0	406	37	22	6	33	1.80
91401355--91401425	35	2.0	35	97	0	133	42	12	16	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91410081--91410120	21	1.9	21	84	0	53	67	2	2	27	1.16
91410658--91410956	148	2.0	148	99	0	589	42	12	9	36	1.75
91412026--91412087	31	2.0	31	87	0	88	41	16	6	35	1.74
91419714--91420149	132	3.4	130	80	5	337	35	19	19	25	1.95
91419795--91420183	132	3.0	132	84	1	494	35	19	18	26	1.95
91422917--91423312	133	3.0	133	88	0	558	27	25	20	27	1.99
91422968--91423215	45	5.6	43	68	13	110	26	26	19	28	1.99
91434780--91435169	132	3.0	130	83	4	467	36	18	17	27	1.94
91442506--91442571	31	2.1	31	88	0	96	34	10	10	43	1.74
91443541--91443602	16	3.8	16	76	6	54	64	1	19	14	1.37
91445258--91445312	22	2.4	22	84	9	65	30	1	3	63	1.22
91456111--91456298	60	3.2	59	75	4	191	25	25	11	37	1.90
91456022--91456272	30	8.4	30	73	7	118	24	25	12	37	1.91
91458815--91458867	21	2.5	21	80	14	63	30	16	0	52	1.44
91461391--91461450	21	2.9	20	78	7	57	41	1	3	53	1.27
91462308--91462370	13	4.9	13	82	1	83	34	7	19	38	1.81
91469389--91469429	13	3.2	12	83	10	55	24	2	2	70	1.11
91470312--91470394	38	2.1	39	95	4	150	22	4	26	45	1.72
91479755--91479883	43	3.0	43	82	4	163	32	31	14	21	1.94
91479755--91479882	42	3.0	42	81	5	159	32	31	14	21	1.94
91482387--91482738	94	3.8	89	76	12	311	28	19	28	23	1.98
91482380--91482734	47	7.6	46	73	11	206	28	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91483418--91483526	43	2.5	43	95	2	193	13	24	34	26	1.93
91486159--91486563	224	1.8	225	94	0	722	36	19	18	25	1.94
91495648--91495966	138	2.3	138	87	5	471	20	23	14	41	1.89
91495696--91495970	46	6.0	46	93	1	444	21	23	14	40	1.90
91498045--91498080	18	2.0	18	88	0	54	0	27	0	72	0.85
91498137--91498165	14	2.1	14	93	6	51	0	17	0	82	0.66
91498118--91498165	11	4.2	11	78	17	53	2	18	0	79	0.84
91500546--91500637	42	2.2	42	92	0	148	34	21	14	29	1.93
91500792--91500956	26	6.4	26	91	0	260	27	24	21	27	1.99
91500792--91500956	52	3.2	52	95	0	296	27	24	21	27	1.99
91504853--91505087	81	2.9	80	85	6	314	30	8	20	41	1.81
91504742--91505101	27	13.3	27	76	6	255	31	9	20	39	1.83
91505079--91505263	27	6.9	27	83	2	210	42	8	19	29	1.81
91505080--91505263	81	2.3	81	86	1	244	41	8	19	29	1.81
91505052--91505263	54	3.9	55	83	3	234	40	8	19	31	1.82
91508095--91508416	46	6.9	46	91	2	405	22	23	13	41	1.88
91508095--91508416	137	2.3	138	85	4	405	22	23	13	41	1.88
91510499--91510537	16	2.4	16	91	0	60	0	30	0	69	0.89
91510562--91510608	20	2.3	21	82	10	62	2	17	0	80	0.80
91510562--91510609	13	3.6	13	78	13	53	2	16	0	81	0.79
91510562--91510602	11	3.5	11	83	9	55	2	17	0	80	0.82
91522364--91522395	15	2.2	15	94	5	57	65	0	9	25	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91526489--91526534	21	2.2	21	84	7	58	21	30	6	41	1.78
91525639--91528433	932	3.0	932	95	0	4928	29	23	12	33	1.92
91527421--91527466	21	2.2	21	84	7	58	21	30	6	41	1.78
91528861--91528934	36	2.1	36	100	0	148	35	21	16	27	1.94
91535391--91535433	23	1.9	22	85	4	59	53	20	6	18	1.67
91542683--91542745	31	2.0	31	84	6	83	61	0	0	38	0.96
91546183--91546257	35	2.1	35	83	9	91	16	8	2	73	1.18
91546214--91546252	20	2.0	20	85	10	53	10	7	2	79	1.02
91554505--91554563	30	2.0	30	86	0	82	42	1	1	54	1.20
91554678--91554746	29	2.4	28	77	15	77	53	5	11	28	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295