genome.fa.s2.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  204  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69922452--69922509	27	2.2	26	81	3	62	68	0	27	3	1.05
69925692--69925788	43	2.3	42	87	1	140	25	18	22	32	1.97
69928156--69928300	46	3.1	45	72	11	141	24	19	26	29	1.98
69929209--69929477	46	5.8	45	72	14	190	22	18	28	30	1.97
69929261--69929423	47	3.5	47	71	8	170	23	17	28	30	1.97
69929205--69929470	93	2.9	93	91	1	417	22	18	28	29	1.98
69930777--69931039	46	5.7	46	95	0	481	23	25	14	35	1.94
69938956--69939067	27	4.2	26	80	7	116	37	20	24	17	1.94
69938956--69939067	54	2.1	54	86	3	154	37	20	24	17	1.94
69944164--69944308	40	3.6	40	84	4	184	24	25	24	25	2.00
69944128--69944308	40	4.5	39	80	7	168	24	25	24	24	2.00
69945495--69945570	38	2.0	38	100	0	152	31	23	13	31	1.93
69948070--69948140	38	1.9	38	94	5	128	32	22	14	30	1.93
69954737--69954904	40	4.2	40	83	4	106	25	27	23	23	2.00
69954760--69954904	40	3.6	40	85	4	193	23	26	24	25	2.00
69956091--69956165	38	2.0	38	97	2	143	30	24	13	32	1.93
69957143--69957301	43	3.7	43	80	9	173	27	15	25	32	1.95
69960790--69961010	40	5.6	40	91	2	331	21	27	23	27	1.99
69965550--69965584	17	2.1	17	100	0	70	40	22	0	37	1.55
69967433--69967483	27	1.9	26	84	4	66	35	17	27	19	1.94
69973632--69973800	43	4.0	42	74	10	128	31	26	19	23	1.98
69983080--69983240	24	6.6	25	71	10	93	22	13	31	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69990457--69990525	24	2.8	24	78	12	77	24	13	27	34	1.92
69994853--69994907	26	2.1	26	100	0	110	38	10	40	10	1.76
69996291--69996397	41	2.6	41	78	15	112	25	20	28	25	1.99
69996292--69996403	43	2.7	40	80	13	111	25	20	28	25	1.99
69998529--69998706	50	3.6	49	83	4	205	31	24	16	26	1.97
70003593--70003689	40	2.4	39	83	6	106	30	21	21	25	1.98
70004103--70004187	21	3.8	21	69	10	53	52	22	1	23	1.54
70008820--70009537	232	3.0	234	93	3	1181	34	18	14	32	1.91
70009717--70009883	9	17.6	9	75	13	147	46	21	1	30	1.59
70009734--70009850	39	3.0	39	97	0	216	46	22	0	30	1.58
70009730--70009881	57	2.7	56	83	8	182	46	23	1	29	1.61
70009728--70009883	48	3.3	47	80	3	186	45	22	1	30	1.60
70009717--70009868	39	4.1	37	88	6	193	46	21	1	30	1.60
70011715--70011740	12	2.2	12	100	0	52	34	7	26	30	1.85
70015417--70015457	21	2.0	21	85	0	55	21	19	51	7	1.71
70015751--70015985	44	5.3	43	83	5	247	25	19	23	31	1.98
70015811--70015985	90	2.0	90	85	3	237	26	20	22	30	1.98
70022388--70022584	27	7.3	27	84	1	225	29	24	7	39	1.82
70022388--70022580	81	2.4	81	86	0	253	29	24	6	38	1.81
70022616--70022738	27	4.6	27	85	3	158	39	21	8	30	1.84
70022583--70022739	54	2.9	54	80	3	156	38	20	10	29	1.87
70022723--70022749	8	3.4	8	100	0	54	55	22	0	22	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70032094--70032315	40	5.7	40	81	8	233	25	21	27	25	1.99
70032094--70032315	79	2.8	78	81	7	245	25	21	27	25	1.99
70032174--70032348	77	2.3	78	81	6	187	25	22	28	24	1.99
70033762--70033842	6	13.0	6	73	17	67	19	16	14	49	1.80
70033762--70033872	31	3.5	31	88	1	141	20	17	12	49	1.79
70033791--70033881	12	7.4	12	74	14	60	21	18	12	47	1.81
70044788--70044843	29	1.9	29	92	0	94	37	28	14	19	1.91
70050612--70050686	28	2.7	28	89	8	125	28	36	13	22	1.92
70052846--70053051	40	5.2	40	94	1	344	28	27	21	22	1.99
70054422--70054447	13	2.0	13	100	0	52	61	7	0	30	1.24
70060995--70061185	40	4.8	40	95	1	339	28	27	21	21	1.99
70062562--70062587	13	2.0	13	100	0	52	61	7	0	30	1.24
70064230--70064389	80	2.0	80	98	0	311	36	5	11	46	1.61
70066221--70066336	28	4.2	28	86	2	146	36	19	24	19	1.95
70068303--70068332	12	2.5	12	94	0	51	73	3	0	23	0.98
70071012--70071275	47	5.6	46	75	14	202	28	20	29	21	1.98
70071052--70071176	46	2.7	46	85	5	153	28	20	31	20	1.97
70071012--70071275	140	1.9	141	84	3	354	28	20	29	21	1.98
70077956--70078080	47	2.7	45	79	11	128	24	25	19	30	1.98
70082235--70082292	29	2.0	29	96	3	109	34	29	17	18	1.94
70083837--70083861	13	1.9	13	100	0	50	32	20	24	24	1.98
70090031--70090086	26	2.1	27	80	6	62	14	10	3	71	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70090028--70090086	25	2.3	27	82	5	68	13	10	3	72	1.22
70092176--70092209	17	2.1	17	88	5	52	32	26	23	17	1.97
70095246--70095357	29	3.9	29	77	5	120	30	32	13	24	1.93
70095447--70095483	19	1.9	19	88	0	56	16	37	18	27	1.92
70099838--70099886	24	2.0	24	100	0	98	38	24	0	36	1.56
70102768--70102810	22	2.0	21	86	4	59	58	6	13	20	1.59
70104817--70104884	19	3.6	19	75	11	77	30	1	4	63	1.23
70104819--70104883	18	3.6	18	70	12	60	30	1	4	63	1.24
70104821--70104901	37	2.2	37	100	0	162	29	2	4	62	1.29
70104834--70104893	19	3.2	19	72	13	70	28	3	3	65	1.25
70104841--70104901	18	3.3	18	73	13	70	27	3	4	63	1.30
70110256--70110289	15	2.3	15	100	0	68	32	11	5	50	1.63
70115744--70115820	39	2.0	39	94	0	136	31	11	12	44	1.79
70119287--70119454	40	4.2	40	83	4	106	25	27	23	23	2.00
70119310--70119454	40	3.6	40	85	4	193	23	26	24	25	2.00
70120641--70120716	38	2.0	38	100	0	152	31	23	13	31	1.93
70127360--70127527	40	4.2	40	83	4	106	25	27	23	23	2.00
70127383--70127527	40	3.6	40	85	4	193	23	26	24	25	2.00
70129272--70129315	18	2.4	18	92	0	70	20	27	9	43	1.82
70129734--70129790	25	2.3	23	78	18	62	43	0	5	50	1.24
70141452--70141563	49	2.3	48	81	7	120	25	18	29	25	1.98
70147312--70147683	125	3.0	125	81	1	433	29	15	16	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70147747--70147864	34	3.6	34	80	7	131	41	16	0	42	1.48
70147957--70148004	24	2.0	24	83	0	60	54	25	2	18	1.55
70148549--70148727	88	2.0	88	100	0	358	48	16	13	21	1.80
70158002--70158047	23	2.0	23	86	0	65	39	19	4	36	1.72
70158068--70158100	16	2.0	17	88	5	50	75	9	15	0	1.03
70158138--70158164	12	2.2	12	100	0	54	66	0	0	33	0.92
70159138--70159176	16	2.4	16	91	0	60	15	23	28	33	1.95
70159157--70159231	38	2.0	38	84	5	98	21	18	21	38	1.93
70159208--70159253	22	2.1	22	87	0	65	26	13	23	36	1.91
70159182--70159300	60	2.0	60	93	0	202	21	15	25	37	1.92
70168475--70168642	43	4.0	42	75	10	171	31	27	16	24	1.96
70168475--70168633	84	1.9	84	83	5	205	30	27	17	24	1.97
70169495--70169536	21	2.0	21	90	0	66	35	33	19	11	1.88
70170178--70170205	10	2.8	10	100	0	56	32	39	10	17	1.84
70175671--70175900	46	5.0	46	95	0	370	22	23	14	39	1.91
70175623--70175900	92	3.0	92	87	3	378	21	23	13	41	1.89
70184443--70184644	55	3.8	52	76	11	162	35	17	25	22	1.95
70184713--70184759	23	2.0	24	87	4	69	46	10	21	21	1.81
70193160--70193233	29	2.6	29	86	4	96	27	16	31	25	1.96
70200954--70201155	55	3.8	53	79	8	207	37	16	24	21	1.93
70201347--70201377	16	1.9	16	93	0	53	41	0	22	35	1.54
70201376--70201415	19	2.1	19	95	0	71	52	0	17	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70219817--70219882	32	2.1	32	100	0	132	22	24	6	46	1.74
70227852--70227991	29	4.9	29	91	0	201	27	17	28	26	1.98
70237411--70237454	22	2.0	22	100	0	88	50	4	27	18	1.66
70239126--70239216	34	2.6	34	82	3	101	30	24	23	21	1.99
70241880--70242064	40	4.7	40	81	6	207	25	27	22	24	2.00
70241880--70242064	79	2.3	82	81	7	211	25	27	22	24	2.00
70249940--70250124	79	2.3	81	82	7	218	25	27	22	24	2.00
70249940--70250124	40	4.6	41	79	9	195	25	27	22	24	2.00
70257715--70257843	48	2.7	48	82	1	152	31	22	13	31	1.93
70264783--70264858	38	2.0	37	84	2	98	30	23	15	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295