genome.fa.s2.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  188  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64553949--64554088	54	2.6	53	84	2	190	35	17	21	25	1.95
64554334--64554385	27	2.0	26	84	3	68	17	26	21	34	1.95
64557016--64557074	27	2.2	26	84	3	73	22	23	18	35	1.96
64558524--64558748	48	4.9	49	71	14	162	28	24	18	28	1.98
64560826--64560971	72	2.0	72	94	0	256	34	19	7	38	1.80
64562514--64562809	49	5.9	50	80	4	312	26	17	27	28	1.98
64562511--64562754	100	2.4	101	89	2	384	25	18	27	28	1.98
64562521--64562803	149	1.9	150	87	2	417	25	17	27	29	1.98
64570631--64570792	43	3.8	43	76	8	145	29	27	16	27	1.97
64578843--64578929	44	2.0	44	95	0	156	51	11	11	25	1.71
64579178--64579237	27	2.3	26	82	2	66	23	21	20	35	1.96
64584238--64584324	44	2.0	44	95	0	156	51	11	11	25	1.71
64584464--64584604	70	2.1	67	82	6	167	19	26	21	31	1.98
64584572--64584631	27	2.3	26	82	2	66	23	21	20	35	1.96
64587570--64587737	46	3.6	46	78	10	180	21	21	28	28	1.99
64587567--64587738	93	1.8	93	91	0	281	21	21	29	27	1.99
64590693--64590761	15	4.7	15	78	12	81	11	17	13	57	1.64
64593150--64593321	93	1.8	93	83	0	227	23	21	27	27	1.99
64600808--64601030	40	5.6	40	82	6	249	25	24	27	23	2.00
64600808--64601066	80	3.3	79	83	4	292	25	23	26	23	2.00
64600808--64601066	40	6.5	41	80	7	234	25	23	26	23	2.00
64605966--64606190	40	5.6	40	81	7	233	25	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64605966--64606190	80	2.8	80	84	3	283	25	24	26	23	2.00
64605966--64606226	120	2.2	121	81	7	302	26	23	25	24	2.00
64608557--64608596	8	5.0	8	87	0	62	25	32	37	5	1.77
64608557--64608596	16	2.5	16	100	0	80	25	32	37	5	1.77
64608949--64609000	27	1.9	27	84	0	68	25	23	17	34	1.96
64612005--64612107	29	3.6	29	89	2	145	27	30	14	28	1.95
64620911--64620980	24	2.9	24	93	4	106	17	12	35	34	1.88
64626640--64626794	28	5.5	28	72	6	116	30	27	18	23	1.98
64626633--64626796	55	2.9	56	82	3	204	30	26	18	24	1.98
64626804--64626959	40	3.9	40	94	2	262	26	28	23	21	1.99
64639455--64639508	27	2.0	27	85	0	72	38	14	7	38	1.75
64659239--64659408	46	3.7	46	79	13	213	28	28	20	21	1.98
64659244--64659414	93	1.8	93	94	0	306	28	29	21	21	1.98
64659834--64659893	30	2.0	30	90	0	93	30	25	8	36	1.85
64666545--64666582	19	2.0	20	85	15	53	39	23	0	36	1.55
64668848--64668909	27	2.3	28	78	10	67	35	22	12	29	1.91
64680397--64680446	16	3.0	17	77	16	59	72	4	8	16	1.24
64681441--64681471	13	2.4	13	100	0	62	19	29	25	25	1.99
64689632--64689672	21	2.0	20	85	4	55	17	46	19	17	1.85
64694125--64694192	35	1.9	35	100	0	136	38	14	8	38	1.78
64700469--64700528	28	2.1	28	85	11	79	33	23	20	23	1.97
64702901--64702926	11	2.4	11	100	0	52	53	19	0	26	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64703122--64703181	22	2.7	23	77	12	63	30	23	23	23	1.99
64703688--64703982	27	10.9	26	75	11	112	30	8	18	42	1.80
64703691--64703776	28	3.1	28	83	9	104	29	6	16	47	1.72
64703678--64703970	81	3.6	81	73	9	238	30	8	19	42	1.80
64703657--64703982	54	6.0	54	74	6	246	30	8	18	41	1.81
64703979--64704043	27	2.4	27	94	0	112	30	20	13	35	1.91
64705660--64705817	39	4.1	39	86	0	208	28	3	24	43	1.72
64705661--64705815	78	2.0	78	88	0	229	29	3	24	42	1.72
64705679--64705839	78	2.1	78	83	0	196	30	4	22	42	1.73
64707956--64708046	30	3.1	29	84	4	121	31	26	12	29	1.92
64710619--64710727	51	2.1	51	86	0	146	28	17	20	33	1.95
64717289--64717378	34	2.6	34	81	10	103	23	25	25	25	2.00
64724502--64724567	29	2.3	28	82	10	71	43	1	25	28	1.63
64725049--64725200	43	3.5	43	78	8	130	30	15	21	32	1.95
64727695--64727911	40	5.5	40	84	6	255	24	28	23	23	1.99
64735812--64736028	40	5.5	40	82	6	237	25	28	22	23	1.99
64736387--64736428	19	2.2	19	100	0	84	19	26	14	40	1.89
64749566--64749655	43	2.1	42	95	2	162	20	16	33	30	1.94
64751812--64751987	46	3.8	46	74	7	158	21	20	28	29	1.98
64751768--64751980	93	2.3	93	89	0	318	22	19	29	29	1.98
64751761--64751933	47	3.7	47	75	10	183	22	19	28	30	1.98
64753667--64753721	28	1.9	29	88	3	85	12	21	45	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64760897--64761111	46	4.7	44	77	9	164	26	20	29	23	1.98
64760894--64761151	46	5.6	44	74	14	152	25	19	29	24	1.98
64765235--64765309	38	2.0	38	94	2	134	30	12	24	33	1.91
64765240--64765318	38	2.1	37	86	4	106	29	11	26	32	1.91
64766494--64766638	40	3.6	40	84	4	184	26	24	24	23	2.00
64771710--64771886	40	4.4	40	92	2	302	28	29	19	22	1.98
64774094--64774118	8	3.1	8	100	0	50	52	0	24	24	1.48
64774487--64774585	44	2.3	42	81	5	117	23	18	23	35	1.96
64775198--64775250	25	2.2	23	83	12	63	32	0	26	41	1.56
64778294--64778505	47	4.5	47	77	10	170	21	30	18	29	1.97
64778385--64778554	46	3.7	45	77	7	146	22	28	19	28	1.98
64784095--64784157	32	2.0	32	96	0	117	30	7	34	26	1.85
64787145--64787279	67	2.0	67	85	2	180	28	20	29	20	1.98
64787213--64787265	27	2.0	26	81	3	61	32	18	26	22	1.97
64792260--64792432	46	3.7	46	74	13	174	30	27	19	22	1.98
64792855--64792914	30	2.0	30	90	0	93	30	25	8	36	1.85
64804965--64805029	34	1.9	33	84	3	85	24	24	26	24	2.00
64807484--64807513	12	2.5	12	94	0	51	30	0	26	43	1.55
64818743--64818792	24	2.1	24	85	10	68	20	28	18	34	1.95
64818749--64818804	23	2.4	24	79	8	62	25	25	17	32	1.97
64821553--64822352	27	29.7	26	77	8	272	36	20	15	28	1.93
64821553--64821989	81	5.4	80	75	8	320	39	20	9	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64821930--64822421	27	18.3	27	86	3	600	33	20	20	25	1.97
64822829--64822948	6	19.3	6	69	19	77	19	15	15	50	1.77
64822829--64822964	31	4.4	31	82	3	141	19	14	14	51	1.76
64824911--64825390	27	17.8	26	75	10	272	38	19	8	32	1.83
64824890--64825390	54	9.3	54	76	6	383	38	19	8	32	1.83
64824937--64825310	81	4.6	81	76	8	305	38	19	8	33	1.82
64825381--64825525	27	5.4	27	88	3	211	33	22	22	22	1.98
64825347--64825827	81	6.1	79	81	7	469	33	19	21	25	1.97
64825383--64825802	54	8.0	54	83	6	513	32	19	22	25	1.97
64825509--64825541	17	1.9	17	100	0	66	36	33	12	18	1.88
64825482--64825569	44	2.0	44	90	0	140	34	25	18	22	1.96
64825526--64825827	27	11.3	27	85	3	369	32	17	22	26	1.97
64826225--64826344	6	19.3	6	69	19	77	19	15	15	50	1.79
64826225--64826360	31	4.4	31	82	3	150	19	14	14	51	1.76
64826236--64826290	19	3.3	19	65	32	52	20	14	16	49	1.80
64839633--64839660	8	3.5	8	100	0	56	28	10	14	46	1.78
64840834--64840963	66	1.9	67	84	10	174	33	16	30	20	1.94
64846817--64846860	22	2.0	22	86	0	61	43	0	4	52	1.22
64849599--64849664	19	3.1	22	65	32	54	27	30	25	16	1.97
64862819--64863195	27	14.0	27	80	6	210	37	19	8	34	1.83
64862941--64863271	54	6.1	55	76	10	225	40	20	8	30	1.82
64862941--64863217	81	3.4	81	80	8	305	40	20	8	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64863226--64863277	27	1.9	27	88	7	79	38	13	13	34	1.84
64863322--64863416	27	3.6	27	87	5	122	34	22	23	20	1.96
64864222--64864280	24	2.4	27	83	16	83	32	18	22	27	1.97
64864413--64864504	42	2.2	42	86	0	121	29	13	20	36	1.90
64864528--64864606	31	2.5	31	95	0	140	30	18	25	25	1.98
64864625--64864679	29	1.9	28	88	3	83	23	20	25	30	1.98
64864617--64864707	33	2.8	33	74	19	102	26	18	24	30	1.98
64880470--64880496	13	2.1	13	100	0	54	55	0	14	29	1.40
64887296--64887355	27	2.3	26	85	2	75	35	20	23	21	1.96
64893571--64893611	20	2.1	20	95	4	75	39	9	14	36	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295