genome.fa.s2.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  112  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36952653--36952824	93	1.8	93	93	0	299	20	20	29	29	1.98
36960224--36960511	47	6.1	47	89	0	432	31	11	29	26	1.92
36960251--36960326	23	3.2	25	62	24	63	28	13	34	23	1.92
36960392--36960467	23	3.2	25	62	24	63	28	13	34	23	1.92
36960223--36960511	141	2.0	141	94	0	506	31	11	29	26	1.92
36960246--36960553	94	3.2	93	86	4	377	32	12	28	26	1.92
36960716--36960860	37	3.9	37	91	0	227	22	17	33	26	1.96
36989640--36989675	17	2.1	17	100	0	72	47	8	11	33	1.69
37015661--37015817	43	3.6	42	78	9	156	25	15	26	31	1.96
37015658--37015830	85	2.0	86	85	3	233	24	16	26	32	1.96
37028392--37028614	40	5.6	40	86	3	263	26	27	20	25	1.99
37036296--37036517	40	5.6	40	85	4	254	26	27	20	25	1.99
37036294--37036517	79	2.8	79	83	4	263	26	27	20	25	1.99
37036296--37036517	119	1.9	119	82	5	279	26	27	20	25	1.99
37042964--37043054	27	3.3	28	87	7	134	39	26	6	27	1.81
37043157--37043272	27	4.3	26	83	11	135	18	23	21	37	1.94
37050298--37050447	67	2.2	67	81	8	171	32	17	28	21	1.96
37050322--37050505	67	2.8	64	77	8	194	29	17	29	22	1.97
37052591--37052662	37	2.0	35	92	7	119	43	15	4	37	1.66
37053690--37053807	27	4.4	27	79	4	121	36	16	21	25	1.94
37054462--37054513	27	2.0	26	84	3	68	17	26	21	34	1.95
37054556--37054615	27	2.3	26	85	2	75	21	25	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37059611--37059640	12	2.5	12	100	0	60	26	40	26	6	1.81
37063125--37063263	53	2.6	54	79	4	138	38	18	21	21	1.94
37066158--37066571	207	2.0	207	99	0	810	26	21	17	34	1.96
37080182--37080298	47	2.5	47	88	0	171	37	12	23	25	1.91
37080310--37080476	55	3.1	54	83	7	214	34	17	24	23	1.96
37080291--37080476	55	3.4	54	81	7	209	34	18	23	23	1.96
37088154--37088184	15	2.1	15	100	0	62	12	32	0	54	1.38
37093842--37093905	32	2.0	32	100	0	128	31	15	18	34	1.93
37096801--37096932	40	3.3	40	94	2	221	24	20	27	28	1.99
37096801--37096965	80	2.1	79	85	5	217	26	20	26	27	1.99
37100781--37100824	14	3.0	14	80	6	52	45	6	0	47	1.29
37106056--37106115	27	2.3	26	82	2	66	35	20	21	23	1.96
37109385--37109557	45	3.7	47	78	15	191	21	21	28	28	1.98
37116870--37116907	19	2.0	20	85	15	53	36	0	23	39	1.55
37122042--37122185	40	3.5	41	81	9	179	25	26	23	25	2.00
37130089--37130272	40	4.6	40	80	8	203	25	26	23	25	2.00
37130089--37130272	83	2.3	79	84	5	242	25	26	23	25	2.00
37134448--37134507	27	2.3	26	82	2	66	35	20	21	23	1.96
37147469--37147512	22	2.0	22	95	0	79	36	11	4	47	1.60
37149467--37149545	37	2.1	37	88	0	113	20	25	20	34	1.96
37153096--37153138	22	2.0	22	85	0	59	37	25	27	9	1.87
37154590--37154649	28	2.2	27	81	3	66	35	23	21	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37168213--37168245	17	1.9	17	100	0	66	48	12	24	15	1.78
37168228--37168296	26	2.6	27	88	2	104	40	14	17	27	1.88
37170784--37170809	12	2.2	12	100	0	52	30	42	0	26	1.56
37173453--37173500	24	2.0	24	100	0	96	20	25	8	45	1.79
37181989--37182121	40	3.3	40	89	2	196	24	26	24	25	2.00
37182066--37182182	61	1.9	61	91	0	189	27	27	22	23	1.99
37202313--37202449	45	3.0	45	87	2	204	28	13	26	32	1.93
37202315--37202524	45	4.7	45	83	2	172	25	15	26	32	1.95
37202450--37202534	44	1.9	44	95	0	152	20	16	29	34	1.94
37205288--37205312	13	1.9	13	100	0	50	24	28	48	0	1.52
37207018--37207162	37	3.9	37	96	0	254	26	32	18	22	1.97
37207295--37207583	48	6.0	48	92	0	488	32	25	5	36	1.80
37211017--37211150	29	4.6	29	69	13	89	29	30	17	23	1.97
37210986--37211150	58	2.9	58	87	0	242	29	29	18	23	1.97
37211304--37211607	43	7.1	43	93	0	500	31	30	23	14	1.94
37213307--37213414	37	2.9	37	92	0	171	25	30	19	25	1.98
37213547--37213844	48	6.2	48	90	0	461	33	24	6	35	1.80
37218410--37218560	43	3.5	43	75	14	141	32	26	18	22	1.97
37225403--37225556	43	3.6	43	75	11	138	29	27	17	25	1.97
37226033--37226089	28	2.0	28	83	12	73	33	28	5	33	1.79
37229413--37229465	18	2.9	18	75	13	56	9	15	7	67	1.39
37229420--37229466	18	2.6	17	83	6	58	6	17	6	70	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37230146--37230937	220	3.6	220	90	1	1140	27	21	18	32	1.97
37238637--37238668	14	2.1	16	88	11	50	43	12	21	21	1.86
37241352--37241435	37	2.3	36	77	8	89	50	8	2	39	1.46
37241495--37241550	26	2.2	26	83	0	67	58	5	1	33	1.31
37245957--37246240	47	6.1	47	85	3	378	32	10	29	27	1.90
37245984--37246059	23	3.2	25	63	24	63	30	11	34	23	1.91
37245956--37246240	141	2.1	137	89	2	435	31	10	29	27	1.90
37246445--37246516	37	1.9	37	91	0	117	20	19	31	27	1.97
37251160--37251190	15	2.1	15	93	0	53	32	25	9	32	1.88
37258552--37258615	33	2.0	32	87	3	92	34	18	25	21	1.96
37270755--37270818	31	2.1	31	88	2	94	26	37	25	10	1.89
37272260--37272295	11	3.4	11	88	7	56	50	16	0	33	1.46
37283690--37283866	40	4.5	40	86	4	218	24	29	23	22	1.99
37290893--37291265	47	8.0	47	95	1	644	31	8	30	29	1.88
37290893--37291265	93	4.0	94	94	1	653	31	8	30	29	1.88
37290893--37291265	140	2.7	140	93	1	651	31	8	30	29	1.88
37290910--37291320	47	8.8	46	92	1	421	31	9	30	28	1.89
37293300--37293445	43	3.4	43	99	0	283	23	15	34	26	1.94
37293427--37293500	29	2.6	29	89	4	105	25	16	32	25	1.96
37293811--37294005	40	4.9	40	87	1	257	23	22	29	25	1.99
37297471--37297844	47	8.0	47	96	0	644	31	9	30	28	1.88
37299615--37300046	47	9.1	47	94	1	695	31	9	30	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37304820--37305076	40	6.5	40	88	2	333	25	28	22	22	1.99
37313150--37313196	19	2.5	19	96	0	85	17	21	19	42	1.89
37330287--37330342	28	2.0	28	100	0	112	32	7	25	35	1.83
37330512--37330659	40	3.7	40	88	1	217	22	21	29	26	1.99
37330515--37330682	79	2.1	79	83	2	203	22	22	29	26	1.99
37334519--37335055	48	10.9	50	90	4	772	37	5	24	31	1.80
37334519--37335058	148	3.6	146	89	4	789	37	5	25	31	1.80
37335205--37335350	37	3.9	37	96	0	256	22	18	31	27	1.97
37339899--37339929	15	2.1	15	93	0	53	32	25	9	32	1.88
37341056--37341164	37	2.9	37	93	0	182	23	19	30	26	1.98
37343163--37343199	13	2.8	13	83	0	56	16	13	8	62	1.54
37364540--37364747	55	3.8	53	73	7	150	38	17	22	21	1.93
37366222--37366319	26	3.8	26	89	1	153	29	23	20	26	1.99
37366222--37366319	52	1.9	51	97	2	187	29	23	20	26	1.99
37366369--37366435	20	3.3	20	87	4	91	31	22	10	35	1.88
37366455--37366502	25	1.9	25	86	0	69	27	14	22	35	1.93
37372104--37372144	20	2.0	20	95	0	73	24	7	14	53	1.66
37382076--37382120	14	3.1	14	93	6	72	26	0	31	42	1.56
37383927--37383984	29	2.0	30	83	10	75	37	25	0	36	1.57
38443341--38443515	46	3.8	46	80	11	205	21	20	29	28	1.98
38443337--38443507	92	1.9	92	93	0	297	22	21	28	27	1.99
38446409--38446479	15	4.7	15	73	5	63	12	19	12	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38446585--38446621	16	2.4	16	86	8	51	18	2	27	51	1.60
38448846--38449021	46	3.8	45	81	10	212	21	21	29	28	1.98
38448843--38449013	93	1.8	93	94	0	306	21	21	29	27	1.98
38451932--38452012	14	5.6	14	72	5	63	9	17	17	55	1.68
38454383--38454556	46	3.8	46	78	6	183	21	21	28	28	1.99
38463594--38463634	22	1.9	21	85	5	55	24	26	39	9	1.86
38465082--38465131	15	3.3	15	88	2	73	20	26	16	38	1.92
38466695--38466790	42	2.3	42	81	5	104	31	27	18	22	1.97
38476964--38477104	53	2.6	55	80	2	169	20	24	17	37	1.93
38480729--38480889	54	3.0	54	80	10	202	36	19	18	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295