genome.fa.s2.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  13  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4075043--4075647	235	2.6	235	87	4	853	30	16	19	32	1.94
4075264--4075502	73	3.2	72	78	10	268	29	15	18	35	1.92
4076910--4076938	15	1.9	15	100	0	58	82	3	0	13	0.79
4077513--4077563	3	16.7	3	80	11	59	31	1	3	62	1.24
4077513--4077563	16	3.1	16	78	13	59	31	1	3	62	1.24
4077727--4077777	15	3.4	15	81	5	59	29	9	0	60	1.28
4077805--4077862	23	2.5	22	81	13	64	29	3	5	62	1.33
4081479--4081527	16	3.1	16	87	0	80	38	4	34	22	1.73
4081776--4081964	61	3.1	60	72	11	206	49	5	1	43	1.34
4081741--4081964	120	1.9	120	99	0	439	49	4	1	44	1.32
4081779--4081962	59	3.1	59	69	20	182	48	5	1	44	1.35
4082071--4082103	14	2.3	15	89	5	50	75	6	0	18	1.00
4082451--4082600	59	2.6	58	85	3	212	37	22	18	21	1.94
4085424--4085562	67	2.0	69	91	4	228	38	21	5	33	1.77
4086890--4086921	14	2.3	14	100	0	64	15	0	46	37	1.46
4091332--4091374	18	2.4	18	88	7	61	46	0	0	53	1.00
4094156--4094212	25	2.2	26	78	3	62	28	8	5	57	1.50
4098756--4099043	139	2.1	138	85	1	387	26	20	20	32	1.97
4100048--4100094	25	2.0	25	83	8	62	27	14	4	53	1.60
4100355--4100747	46	8.9	46	86	9	532	22	23	15	38	1.93
4100581--4100740	38	4.0	38	83	12	221	23	23	18	35	1.96
4100534--4100747	84	2.5	84	96	0	401	23	23	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4105924--4106394	143	3.3	143	85	2	626	28	21	18	31	1.97
4106171--4106421	45	5.4	45	71	13	179	27	24	16	31	1.97
4106216--4106398	99	1.9	98	84	1	249	27	22	18	31	1.97
4106314--4106442	45	2.9	45	80	1	143	28	23	16	31	1.96
4109575--4109806	49	4.7	49	83	5	304	29	26	18	25	1.98
4109575--4109806	100	2.3	98	86	4	313	29	26	18	25	1.98
4114789--4115020	49	4.7	49	84	5	304	28	26	19	25	1.99
4114789--4115020	100	2.3	98	86	5	324	28	26	19	25	1.99
4116140--4116219	41	2.0	41	94	0	142	55	8	11	25	1.64
4122515--4122542	3	9.3	3	100	0	56	32	0	0	67	0.91
4124212--4124255	18	2.5	17	82	10	52	20	4	2	72	1.13
4124206--4124267	24	2.6	24	84	0	79	20	3	3	72	1.13
4130621--4130654	13	2.6	13	95	0	59	76	2	0	20	0.92
4133840--4134087	104	2.4	103	80	4	275	23	23	30	22	1.99
4141750--4141780	12	2.6	12	94	0	53	38	32	6	22	1.80
4143534--4143610	39	2.0	39	94	0	136	35	27	16	20	1.95
4149018--4149058	18	2.3	18	87	8	57	60	0	0	39	0.96
4153722--4153749	13	2.2	13	100	0	56	50	0	7	42	1.30
4154097--4154168	29	2.7	26	75	23	76	50	0	2	47	1.15
4166354--4166386	11	3.3	10	88	12	50	57	0	42	0	0.98
4177083--4177125	17	2.5	17	82	10	52	69	2	0	27	1.00
4178498--4178549	27	1.9	27	84	7	70	51	5	11	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4182134--4182183	24	2.1	24	82	17	61	36	2	4	58	1.29
4182347--4182393	21	2.2	21	80	0	58	36	2	0	61	1.08
4182802--4182855	20	2.7	19	81	18	58	27	7	3	61	1.40
4183441--4183496	19	2.9	19	78	19	62	30	1	5	62	1.28
4183440--4183494	29	1.9	29	85	10	78	30	1	3	63	1.22
4183441--4183495	9	5.8	9	76	19	58	30	1	3	63	1.22
4183535--4183593	22	2.7	23	78	17	72	32	1	1	64	1.13
4185868--4185923	26	2.0	30	83	16	77	28	0	5	66	1.14
4188396--4188443	23	2.1	24	81	18	66	66	2	8	22	1.29
4190008--4190123	44	2.6	44	81	5	126	29	22	16	31	1.96
4190141--4190694	234	2.4	234	85	0	723	29	21	16	32	1.95
4194656--4194698	13	3.2	13	81	12	52	62	2	4	30	1.28
4199605--4199732	63	2.0	63	100	0	256	18	20	25	35	1.95
4201268--4201312	19	2.4	19	85	7	56	46	6	20	26	1.75
4204149--4204188	13	3.1	13	96	0	71	17	37	30	15	1.90
4206619--4206661	18	2.4	18	81	11	52	69	2	9	18	1.26
4213934--4213980	17	2.8	16	81	12	58	80	6	6	6	1.01
4214221--4214273	24	2.2	24	90	3	81	52	0	9	37	1.34
4216708--4216808	39	2.6	39	91	0	157	39	23	23	12	1.90
4216727--4216790	21	3.2	21	67	13	62	42	21	23	12	1.87
4223971--4224009	20	1.9	21	89	5	62	43	20	2	33	1.65
4225327--4225434	26	4.2	26	97	0	207	30	6	26	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4227223--4227509	137	2.1	137	97	0	538	24	19	25	31	1.98
4229255--4229293	20	2.0	20	84	0	51	28	7	0	64	1.21
4229482--4229532	15	3.6	14	74	10	50	35	1	7	54	1.40
4231873--4231930	28	2.1	28	90	0	89	48	12	0	39	1.40
4231873--4231921	13	3.6	13	76	10	53	46	12	0	40	1.41
4231968--4232006	20	1.9	21	94	5	71	20	28	5	46	1.72
4233738--4233805	30	2.2	30	82	7	75	48	10	1	39	1.46
4236216--4236246	13	2.4	13	100	0	62	67	0	6	25	1.14
4236701--4236792	13	7.5	13	70	25	67	57	2	2	38	1.23
4236715--4236783	24	2.8	25	84	6	86	60	2	0	36	1.11
4236741--4236792	24	2.2	24	86	6	70	59	0	1	38	1.08
4236832--4236864	9	3.7	9	91	0	57	66	3	0	30	1.06
4236832--4236883	15	3.2	16	83	10	61	63	1	0	34	1.06
4236832--4236881	18	2.8	18	82	8	57	64	2	0	34	1.05
4238628--4239416	90	8.8	87	77	12	696	38	19	16	26	1.92
4238628--4239422	176	4.4	172	79	12	799	38	19	16	26	1.92
4238879--4238917	15	2.7	14	80	7	51	61	2	12	23	1.43
4239056--4239089	14	2.4	14	95	0	59	55	8	17	17	1.66
4239147--4239192	13	3.5	13	85	5	65	58	4	13	23	1.52
4238985--4239364	187	2.0	186	85	5	516	38	17	15	28	1.91
4239157--4239422	85	3.1	86	82	10	335	36	19	16	27	1.93
4252405--4252497	13	7.5	13	70	23	58	56	3	2	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4252537--4252569	9	3.7	9	91	0	57	66	3	0	30	1.06
4252537--4252588	15	3.2	16	83	10	61	63	1	0	34	1.06
4252537--4252586	18	2.8	18	82	8	57	64	2	0	34	1.05
4253233--4253266	12	2.8	12	83	16	52	82	0	17	0	0.67
4255253--4255334	41	2.0	41	85	0	110	28	9	21	40	1.85
4255686--4255737	27	2.0	26	81	11	61	55	3	1	38	1.29
4257377--4257421	24	2.0	22	86	8	63	22	2	0	75	0.91
4260576--4260718	17	8.4	17	77	9	130	46	10	11	30	1.74
4260576--4260737	35	4.7	34	80	7	175	46	10	12	30	1.75
4260914--4260960	20	2.5	19	77	16	53	44	8	17	29	1.78
4261123--4261173	17	3.0	16	77	11	57	72	1	0	25	0.95
4261301--4261366	11	6.1	11	79	10	64	0	18	0	81	0.68
4261303--4261367	13	5.2	12	75	10	60	0	16	0	83	0.66
4261303--4261367	19	3.6	17	75	20	62	0	16	0	83	0.66
4261326--4261366	18	2.4	17	84	8	55	0	17	0	82	0.66
4261615--4261673	13	4.6	14	81	12	65	0	25	0	74	0.82
4261625--4261680	3	18.0	3	82	17	62	0	30	0	69	0.89
4261753--4261791	21	2.0	20	85	10	53	0	43	0	56	0.99
4262040--4262152	29	3.9	29	79	7	115	46	3	20	30	1.67
4262421--4262622	50	3.8	51	88	9	291	35	18	16	30	1.93
4262421--4262636	54	4.1	53	88	7	305	36	17	16	29	1.92
4262421--4262629	104	2.0	104	90	4	332	36	18	16	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4262725--4262754	13	2.3	13	94	0	51	63	6	13	16	1.50
4262738--4262991	91	2.9	89	82	10	308	35	18	19	26	1.95
4262897--4262930	16	2.1	16	88	0	50	64	5	11	17	1.45
4262947--4263235	124	2.3	125	92	4	487	36	22	13	27	1.92
4263073--4263878	191	4.2	191	97	2	1519	35	20	13	30	1.92
4263391--4263619	123	1.9	123	84	3	309	34	20	13	31	1.92
4263514--4263692	68	2.6	70	83	2	218	33	21	14	30	1.93
4263584--4263809	122	1.9	121	84	2	310	34	21	14	30	1.93
4275594--4275737	17	8.4	17	77	8	130	47	10	11	30	1.74
4275505--4275633	36	3.4	38	72	16	115	41	12	10	35	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295