genome.fa.s2.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  149  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50868305--50868460	82	1.9	81	85	3	215	26	16	28	28	1.97
50868304--50868457	55	2.9	52	82	7	175	27	16	27	27	1.97
50868305--50868460	27	5.7	27	81	6	163	26	16	28	28	1.97
50868297--50868481	27	6.8	27	75	9	101	26	16	28	29	1.97
50868297--50868481	82	2.3	81	78	2	210	26	16	28	29	1.97
50870511--50870543	17	2.0	17	94	5	59	36	15	0	48	1.45
50870819--50871143	46	7.0	46	89	0	427	23	23	13	39	1.91
50871992--50872156	46	3.6	46	92	0	258	36	13	25	24	1.93
50872196--50872428	46	5.0	46	83	1	252	22	23	13	40	1.89
50872201--50872424	93	2.4	92	84	2	270	21	23	13	41	1.89
50873224--50873388	46	3.6	46	90	0	249	36	13	24	24	1.92
50873428--50873660	46	5.0	46	84	1	252	23	23	12	40	1.89
50873433--50873656	93	2.4	92	84	2	270	22	23	12	41	1.88
50874456--50874619	46	3.6	46	93	0	265	37	13	25	24	1.92
50874659--50874891	46	5.0	47	85	1	267	23	23	12	40	1.88
50874705--50874779	24	3.2	24	65	24	68	20	24	13	42	1.87
50874659--50874887	93	2.5	92	84	2	280	22	23	12	41	1.88
50875740--50875904	46	3.6	46	88	0	231	35	14	25	24	1.93
50875944--50876116	93	1.9	93	86	2	249	21	23	13	41	1.89
50875944--50876130	46	4.0	47	88	1	245	22	23	12	41	1.88
50878303--50878348	17	2.8	17	78	15	60	50	0	0	50	1.00
50880702--50880734	17	2.0	17	88	5	50	39	12	0	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50881015--50881292	46	6.0	47	89	2	343	21	23	13	41	1.88
50883424--50883492	15	4.3	16	74	18	63	47	2	0	49	1.16
50883528--50883578	24	2.1	24	82	7	59	25	9	7	56	1.58
50883606--50883677	29	2.5	27	72	18	65	45	4	0	50	1.21
50888962--50889280	48	6.6	48	74	5	277	24	28	19	26	1.99
50888977--50889280	144	2.1	145	84	6	393	25	28	19	26	1.99
50895050--50895388	43	7.9	43	88	3	461	25	16	28	30	1.96
50899482--50899896	48	8.6	48	75	7	317	25	28	19	26	1.99
50899482--50899833	144	2.4	144	79	5	399	25	28	19	26	1.99
50899482--50899914	96	4.5	96	81	4	446	25	29	18	26	1.98
50906010--50906059	26	1.9	26	88	8	75	42	20	18	20	1.90
50906087--50906185	26	3.9	26	76	6	80	37	17	24	21	1.94
50913587--50913761	46	3.8	45	76	10	174	21	20	29	29	1.98
50913582--50913753	93	1.8	93	88	0	263	21	20	29	28	1.98
50918419--50918594	46	3.8	45	78	10	185	21	19	28	29	1.98
50918415--50918586	93	1.8	93	91	0	281	21	20	29	28	1.98
50921502--50921611	27	4.1	26	87	8	148	37	22	23	16	1.94
50921502--50921611	54	2.0	54	89	3	168	37	22	23	16	1.94
50932239--50932366	27	4.7	27	87	0	157	29	21	7	41	1.81
50932239--50932529	54	5.6	54	82	7	348	29	21	6	41	1.79
50932239--50932529	81	3.7	80	79	8	337	29	21	6	41	1.79
50932323--50932412	45	2.0	45	93	0	153	32	20	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50932368--50932529	27	6.0	27	85	0	207	30	21	6	41	1.77
50932269--50932529	99	2.5	99	83	5	306	30	20	6	42	1.78
50932242--50932492	126	2.0	126	87	1	360	30	19	7	42	1.78
50932853--50932912	27	2.3	26	85	2	75	21	23	20	35	1.96
50933030--50933109	31	2.6	31	79	0	97	21	17	12	48	1.80
50933086--50933172	6	14.3	6	79	11	97	16	18	16	49	1.80
50933052--50933163	43	2.6	43	88	0	152	18	19	13	48	1.81
50936926--50936987	26	2.3	26	81	8	72	48	22	12	16	1.80
50937011--50937091	26	3.2	24	75	16	83	37	19	24	18	1.94
50949795--50949883	24	3.7	24	83	7	110	24	30	16	28	1.97
50949771--50949906	49	2.8	48	81	10	136	25	30	16	27	1.96
50949771--50949906	73	1.9	73	82	3	175	25	30	16	27	1.96
50950958--50950996	20	1.9	21	89	5	62	20	7	0	71	1.10
50953468--50953647	40	4.5	40	92	2	283	23	22	26	27	2.00
50961883--50962022	40	3.5	41	92	4	234	22	22	26	27	1.99
50963337--50963404	34	2.0	34	100	0	136	32	17	17	32	1.94
50972457--50972486	2	15.0	2	100	0	60	0	0	50	50	1.00
50977627--50977678	27	2.0	26	84	3	68	17	26	21	34	1.95
50981859--50982041	79	2.3	81	84	7	232	25	27	22	24	2.00
50981838--50982041	40	5.1	40	82	8	238	25	27	22	24	2.00
50988890--50989074	40	4.7	40	83	6	216	25	27	22	24	2.00
50988890--50989074	79	2.3	80	79	8	198	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51006952--51006997	24	1.9	24	86	0	65	32	23	15	28	1.95
51007034--51007102	20	3.5	20	97	0	129	37	8	18	34	1.82
51007028--51007102	9	7.6	10	74	16	68	37	8	18	36	1.80
51007034--51007114	20	4.1	20	91	3	83	38	9	17	34	1.83
51007034--51007114	40	2.0	40	88	4	119	38	9	17	34	1.83
51007147--51007242	25	3.9	24	82	9	104	29	22	22	25	1.99
51007147--51007216	24	2.8	25	89	4	106	27	24	22	25	2.00
51007436--51007545	31	3.5	31	93	0	184	33	18	24	23	1.97
51015571--51015743	46	3.7	46	75	13	192	21	20	27	30	1.98
51015568--51015738	93	1.8	93	93	0	297	21	20	28	29	1.98
51025364--51025409	20	2.3	20	96	0	83	36	6	19	36	1.78
51025454--51025523	24	2.8	25	89	4	97	27	24	24	24	2.00
51025742--51025856	31	3.7	31	92	1	196	36	17	22	23	1.95
51030230--51030290	27	2.3	27	82	2	70	24	21	19	34	1.96
51030323--51030459	27	5.1	27	80	8	136	30	11	21	36	1.89
51035782--51036285	47	10.6	49	93	2	802	32	8	29	29	1.87
51035782--51036285	192	2.6	192	94	1	863	32	8	29	29	1.87
51041528--51041669	67	2.1	67	86	5	194	30	22	28	18	1.97
51042308--51042362	27	2.0	27	89	0	83	27	16	14	41	1.87
51042344--51042443	27	3.7	27	72	7	87	32	7	22	39	1.80
51042392--51042528	27	5.1	27	82	3	141	30	10	21	37	1.88
51044573--51044648	29	2.7	29	83	6	93	28	34	13	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51044871--51044906	16	2.2	16	90	0	54	8	13	19	58	1.61
51051297--51051326	15	2.0	15	93	0	51	26	0	16	56	1.40
51064005--51064208	43	4.9	43	93	3	323	25	28	20	25	1.99
51065884--51066015	52	2.6	51	81	2	158	32	27	14	25	1.94
51070908--51070964	27	2.1	27	93	0	96	49	17	8	24	1.75
51073695--51073806	47	2.4	47	100	0	224	30	28	7	33	1.84
51074012--51074172	40	4.1	40	78	10	134	24	27	22	25	2.00
51078167--51078465	40	7.5	40	93	0	499	26	28	21	24	1.99
51089826--51090028	27	7.6	26	79	7	104	40	21	10	27	1.85
51089907--51090128	27	8.3	27	84	5	184	37	18	15	27	1.92
51089853--51090084	107	2.2	108	82	5	274	38	20	12	28	1.88
51089847--51090110	134	2.0	134	86	3	370	38	19	13	28	1.90
51090102--51090146	19	2.4	19	88	0	63	35	17	24	22	1.95
51090076--51090174	46	2.2	46	92	3	164	34	18	22	25	1.96
51090604--51090672	6	11.3	6	79	14	79	18	15	14	50	1.78
51094405--51094483	41	1.9	41	86	0	113	17	25	39	17	1.92
51094407--51094493	41	2.1	41	82	4	104	19	24	37	18	1.94
51099703--51099895	43	4.5	43	84	3	230	26	15	25	33	1.95
51106506--51106606	28	3.6	28	75	2	87	24	30	15	28	1.96
51111050--51111100	16	3.2	16	88	5	77	9	15	23	50	1.73
51114919--51114970	27	1.9	27	84	0	68	11	11	25	51	1.71
51115254--51115355	27	3.8	27	75	13	93	25	30	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51115254--51115344	28	3.3	28	76	15	100	25	29	14	30	1.95
51117153--51117202	24	2.1	24	100	0	100	16	12	22	50	1.77
51117565--51117656	47	2.0	47	97	0	175	38	3	19	39	1.68
51118007--51118129	25	4.9	25	76	5	115	31	20	19	28	1.97
51126111--51126154	20	2.2	20	88	4	63	25	15	31	27	1.96
51126158--51126295	34	4.3	34	66	28	104	25	20	26	28	1.99
51131324--51131508	40	4.7	40	82	9	191	24	22	27	25	2.00
51131377--51131541	79	2.1	79	82	6	192	26	21	26	25	1.99
51139054--51139521	47	10.1	47	93	2	759	32	9	30	28	1.88
51139187--51139259	22	3.3	22	62	11	58	31	10	28	28	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295