genome.fa.s2.2.7.7.80.10.50.1000.285.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  285  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96815751--96815961	25	8.7	25	70	15	131	56	4	5	33	1.42
96816455--96816569	30	3.8	30	84	2	142	22	4	45	27	1.71
96818147--96818181	17	2.0	18	88	5	54	2	2	20	74	1.08
96818130--96818175	20	2.1	21	88	11	67	4	4	15	76	1.11
96821705--96821747	21	2.0	21	95	0	77	27	0	37	34	1.57
96821728--96821760	16	2.1	16	94	0	57	33	0	36	30	1.58
96821739--96821833	45	2.1	44	88	1	136	34	5	27	32	1.79
96821995--96822029	18	2.0	17	88	5	52	54	0	0	45	0.99
96821953--96822025	27	2.7	27	76	8	76	52	2	0	45	1.15
96821914--96822185	144	1.9	147	94	3	487	46	3	2	47	1.34
96822139--96822173	18	2.0	17	88	5	52	54	0	0	45	0.99
96822159--96822337	55	3.1	54	64	22	128	49	7	2	41	1.43
96822154--96822341	61	3.1	61	68	14	190	49	6	2	41	1.41
96822122--96822344	120	1.9	120	97	0	419	49	6	2	42	1.40
96822259--96822293	18	2.0	17	88	5	52	60	0	0	40	0.97
96822334--96822380	17	2.9	16	78	18	53	46	2	6	44	1.40
96822353--96822386	17	2.0	17	94	0	59	50	0	5	44	1.26
96822419--96822613	93	2.1	92	88	4	286	47	4	4	44	1.41
96829535--96829752	39	5.6	39	88	2	312	11	27	22	37	1.90
96840050--96840086	4	9.2	4	100	0	74	75	0	24	0	0.80
96846868--96846900	17	1.9	17	88	11	50	60	3	0	36	1.12
96849400--96849480	39	2.0	40	90	2	128	40	2	4	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96849819--96849847	11	2.6	11	100	0	58	55	0	0	44	0.99
96850821--96850859	18	2.1	19	85	4	53	5	10	2	82	0.93
96854290--96854357	29	2.3	30	80	7	86	33	7	10	48	1.65
96859984--96860046	30	2.1	30	91	5	101	25	4	11	58	1.51
96864670--96864835	23	7.3	23	75	14	150	34	18	21	25	1.96
96864713--96864841	40	3.1	39	79	16	150	35	18	23	22	1.96
96864682--96864841	87	1.8	88	90	4	261	36	18	21	23	1.95
96864709--96864845	22	6.2	23	70	23	89	34	18	24	22	1.96
96870353--96870395	22	2.0	22	86	9	61	74	0	9	16	1.06
96875244--96875271	6	4.7	6	100	0	56	85	14	0	0	0.59
96877209--96877324	57	2.0	57	83	8	144	54	4	8	32	1.51
96877693--96877739	22	2.1	22	88	0	67	53	4	2	40	1.32
96879515--96879745	89	2.6	88	81	8	249	36	19	16	27	1.93
96879650--96879821	75	2.3	75	95	1	308	33	18	19	28	1.95
96879800--96879834	14	2.5	14	86	13	54	57	5	20	17	1.60
96880065--96880099	14	2.5	14	86	13	54	57	5	20	17	1.60
96879735--96882018	264	8.7	264	92	3	3752	36	18	17	28	1.93
96880329--96880363	14	2.5	14	86	13	54	57	5	20	17	1.60
96881127--96881161	14	2.5	14	86	13	54	57	5	20	17	1.60
96879603--96882018	798	3.1	789	92	4	3862	35	18	17	28	1.94
96881589--96881729	76	1.9	76	92	0	237	28	20	19	31	1.97
96881665--96882018	94	4.0	88	83	9	457	35	19	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96881818--96881852	14	2.5	14	86	13	54	57	5	20	17	1.60
96881657--96882005	183	1.9	177	91	5	567	35	19	18	26	1.95
96881937--96882074	74	1.9	72	86	3	195	31	21	16	30	1.95
96894610--96894664	26	2.1	25	83	12	67	61	5	3	29	1.35
96894605--96894664	27	2.4	24	76	17	59	60	5	3	31	1.35
96894735--96894800	20	3.4	20	71	19	59	59	3	6	31	1.37
96895162--96895208	22	2.1	22	92	0	76	55	4	2	38	1.31
96895154--96895208	22	2.7	21	81	13	62	54	3	3	38	1.36
96897199--96897233	14	2.5	14	86	13	54	57	5	20	17	1.60
96897454--96897488	14	2.5	14	86	13	54	57	5	20	17	1.60
96896989--96898078	352	3.1	349	88	5	1525	36	18	16	27	1.93
96897806--96897840	14	2.5	14	86	13	54	57	5	20	17	1.60
96896989--96898068	88	12.4	87	85	7	1320	36	18	16	27	1.93
96899126--96899606	132	3.7	131	78	5	416	34	18	18	27	1.95
96903896--96903938	7	5.7	7	86	10	59	25	2	2	69	1.12
96909238--96909288	3	17.0	3	100	0	102	66	0	0	33	0.92
96909514--96909545	12	2.4	14	80	20	50	68	6	6	18	1.32
96910941--96910983	23	1.9	22	86	13	61	58	9	0	32	1.30
96910880--96911311	143	3.1	136	86	9	596	59	5	4	31	1.38
96911120--96911146	3	9.0	3	100	0	54	66	0	0	33	0.92
96910828--96911311	143	3.5	139	85	9	582	59	5	4	30	1.40
96911167--96911372	97	2.1	97	86	7	285	59	6	3	31	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96911206--96911406	100	2.0	98	87	7	291	59	6	3	30	1.39
96911206--96911397	97	2.0	96	88	9	284	59	6	3	30	1.41
96913106--96913303	75	2.7	75	84	2	238	30	20	18	30	1.96
96913227--96913404	91	2.0	91	88	2	268	38	16	17	26	1.91
96913310--96913468	77	2.1	77	87	0	228	35	20	16	27	1.95
96925413--96925568	41	3.8	41	89	6	235	28	22	20	28	1.98
96926051--96926098	24	2.1	23	85	11	64	31	14	0	54	1.41
96927201--96927254	24	2.2	24	96	0	99	37	29	11	22	1.89
96934519--96934631	49	2.3	49	82	11	135	34	30	13	22	1.92
96934519--96934654	73	1.9	72	83	10	179	34	29	13	22	1.92
96934497--96934656	24	6.6	24	77	11	139	33	30	13	22	1.93
96938190--96938239	21	2.3	22	83	13	59	62	10	4	24	1.44
96938378--96938925	131	4.1	131	81	13	575	59	5	4	30	1.40
96938346--96938665	149	2.1	149	81	11	359	58	5	5	30	1.44
96938519--96938930	128	3.1	133	91	4	690	59	6	4	29	1.40
96938688--96938791	24	4.6	23	73	19	78	60	5	1	31	1.31
96938519--96938955	130	3.3	128	83	10	571	60	5	4	29	1.39
96939835--96939880	23	2.1	21	88	8	65	26	13	43	17	1.85
96941857--96941915	25	2.5	24	84	13	77	45	5	11	37	1.63
96944038--96944077	20	1.9	22	85	10	57	35	0	7	57	1.27
96945603--96946061	127	3.6	127	84	5	518	28	16	18	36	1.93
96949351--96949405	19	2.9	19	86	5	67	29	16	9	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96971438--96972248	44	18.0	44	75	7	443	29	19	24	26	1.98
96971284--96972182	133	6.6	133	76	8	641	29	19	25	26	1.98
96971443--96972396	89	10.5	89	71	9	532	29	19	24	26	1.98
96971849--96972019	45	3.8	44	80	7	159	30	18	23	26	1.97
96971622--96972376	228	3.3	229	86	2	980	28	19	25	26	1.98
96972133--96972430	140	2.1	140	80	2	321	30	16	25	27	1.97
96974705--96975064	127	2.8	126	86	4	483	28	15	17	37	1.91
96974722--96975162	127	3.5	125	81	8	448	28	16	17	38	1.91
96978469--96978547	30	2.6	30	88	4	115	30	1	18	49	1.56
96985985--96986015	3	10.3	3	100	0	62	0	0	67	32	0.91
96986649--96986693	23	2.0	22	82	8	54	24	6	11	57	1.57
96987585--96987620	17	2.2	16	90	5	54	47	16	2	33	1.61
96995181--96995298	60	1.9	61	80	10	134	44	1	0	54	1.10
96997856--96997901	20	2.3	20	85	7	58	58	0	0	41	0.98
96997869--96997908	20	2.0	20	85	5	53	65	0	2	32	1.06
97004256--97004315	20	3.1	19	74	9	59	58	0	0	41	0.98
97008875--97008909	8	4.4	8	88	0	52	40	22	11	25	1.88
97008875--97008908	12	2.8	12	86	0	50	38	23	11	26	1.89
97010647--97010895	123	2.0	122	98	0	480	37	22	14	25	1.92
97018057--97018092	17	2.1	17	89	0	54	50	8	8	33	1.63
97021059--97021088	15	1.9	16	93	6	53	46	10	6	36	1.64
97022418--97022452	18	1.9	18	88	0	52	77	8	0	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97027639--97027693	26	2.1	27	86	10	78	60	5	3	30	1.37
97027641--97027693	27	1.9	27	85	11	72	62	3	3	30	1.30
97029581--97029616	14	2.5	14	90	4	54	80	0	16	2	0.83
97029591--97029639	22	2.2	23	79	17	59	75	0	16	8	1.03
97029572--97029623	25	2.0	25	85	11	68	78	0	17	3	0.89
97053963--97054024	14	4.4	14	75	6	63	38	1	3	56	1.25
97053969--97054025	21	2.7	21	72	0	60	40	1	3	54	1.28
97055902--97055964	30	2.2	28	85	5	81	55	3	3	38	1.32
97059512--97059555	3	14.7	3	95	0	79	34	0	2	63	1.07
97062640--97062679	20	2.0	21	90	5	64	50	5	5	40	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295