genome.fa.s2.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  96  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30751219--30751312	45	2.1	46	90	6	147	34	14	24	26	1.94
30751223--30751329	45	2.3	46	85	4	146	33	15	22	28	1.95
30756286--30756417	50	2.7	50	83	3	160	31	27	15	26	1.96
30762570--30762758	40	4.8	39	86	4	229	23	29	24	22	1.99
30762570--30762762	79	2.4	78	83	10	239	23	28	24	23	2.00
30770627--30770738	40	2.8	39	85	4	136	24	28	23	24	2.00
30782556--30782749	53	3.6	53	77	6	192	37	17	24	20	1.94
30785510--30785539	16	1.9	15	93	6	51	33	23	0	43	1.54
30785739--30785874	50	2.7	50	83	1	166	30	27	17	25	1.97
30789046--30789201	43	3.7	43	77	6	149	25	17	28	28	1.98
30798865--30798987	62	2.0	62	98	0	237	30	6	23	39	1.80
30800725--30800751	9	3.0	9	100	0	54	55	0	11	33	1.35
30806019--30806079	28	2.2	28	84	0	77	29	26	21	22	1.99
30810101--30810190	33	2.7	33	96	0	162	25	24	17	32	1.97
30810336--30810407	27	2.7	27	82	0	90	37	20	22	19	1.94
30810348--30810422	27	2.8	26	84	6	87	34	20	22	22	1.96
30814245--30814610	46	8.0	46	86	1	428	20	24	13	41	1.89
30814250--30814596	138	2.5	138	87	0	498	19	24	14	41	1.89
30816977--30817293	47	6.7	47	93	0	526	28	29	8	33	1.86
30820404--30820451	11	4.2	11	79	10	51	62	2	0	35	1.07
30829797--30829881	45	1.9	44	87	2	125	23	14	24	37	1.92
30832328--30832412	40	2.1	40	86	4	118	29	17	28	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30834932--30834993	3	20.7	3	77	6	54	33	6	1	58	1.34
30835030--30835271	138	1.8	128	82	10	306	28	5	4	61	1.38
30839536--30839729	27	7.2	27	80	2	185	40	20	8	30	1.82
30839536--30839729	81	2.4	81	84	2	230	40	20	8	30	1.82
30839536--30839785	54	4.6	54	79	3	218	40	20	9	30	1.84
30839546--30839821	27	10.3	27	77	5	182	38	20	9	31	1.84
30839806--30840107	27	11.2	27	85	3	349	36	17	19	26	1.94
30840333--30840413	27	3.1	27	81	12	96	18	19	19	41	1.90
30840463--30840701	98	2.4	98	84	5	331	21	18	26	33	1.96
30840723--30840803	27	3.0	27	85	5	94	18	23	22	35	1.95
30843991--30844075	39	2.2	39	97	0	161	29	25	17	27	1.98
30853992--30854264	75	3.5	78	78	8	272	33	16	17	32	1.92
30854502--30854743	89	2.8	88	86	5	330	32	21	23	22	1.98
30856070--30856252	3	59.7	3	66	19	58	32	5	3	58	1.37
30856062--30856129	9	7.3	9	75	9	57	36	5	1	55	1.33
30856069--30856119	18	2.8	18	84	0	66	37	7	0	54	1.29
30856196--30856233	17	2.2	17	90	0	58	31	2	0	65	1.06
30856203--30856279	17	4.4	17	71	18	50	31	2	2	63	1.21
30871637--30871751	45	2.6	46	82	6	157	28	16	26	27	1.97
30872021--30872294	38	7.2	38	88	1	354	21	22	24	31	1.98
30872287--30872409	45	2.7	45	88	2	185	19	22	28	29	1.98
30881385--30881509	47	2.7	45	80	14	139	21	27	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30888762--30888872	55	2.0	55	96	0	204	32	21	18	27	1.97
30890939--30890983	22	2.1	21	84	8	56	71	2	4	22	1.15
30896936--30897056	42	2.8	43	83	5	145	29	26	19	24	1.98
30896942--30897056	44	2.7	42	83	4	131	29	26	19	24	1.98
30900038--30900152	46	2.5	44	86	6	151	23	28	19	28	1.98
30900522--30900576	27	2.0	27	96	0	101	49	9	3	38	1.52
30903728--30903813	42	2.0	44	95	4	158	33	0	9	56	1.31
30903744--30903830	42	2.1	42	80	4	95	32	1	12	54	1.46
30904935--30905244	94	3.3	95	76	4	254	25	18	30	26	1.98
30905173--30905285	49	2.3	48	80	7	120	29	19	28	23	1.98
30906045--30906157	55	2.1	55	81	3	129	22	24	27	25	2.00
30908485--30908518	13	2.6	13	85	0	50	23	50	17	8	1.74
30911826--30911948	42	2.9	42	76	7	131	33	14	22	29	1.94
30911837--30911948	43	2.6	42	78	8	111	33	15	22	29	1.94
30925214--30925262	24	2.0	24	100	0	98	38	16	8	36	1.78
30934342--30934371	15	1.9	16	93	6	53	26	0	46	26	1.53
30935509--30935542	13	2.5	14	85	9	52	20	8	17	52	1.71
30942925--30943194	46	5.8	48	72	14	174	28	19	28	23	1.98
30945507--30945673	46	3.6	46	76	12	171	29	17	27	25	1.98
30945695--30945820	46	2.6	48	78	8	139	28	19	29	22	1.98
30950510--30950576	17	3.6	17	67	21	53	19	19	38	22	1.93
30950625--30950696	31	2.4	31	88	2	101	20	31	36	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30954592--30955262	47	14.3	47	89	3	974	27	29	8	34	1.87
30954592--30955262	141	4.8	141	95	0	1128	27	29	8	34	1.87
30957111--30957141	12	2.7	12	95	5	55	29	25	9	35	1.88
30957978--30958137	43	3.7	43	73	9	121	30	25	16	27	1.97
30958630--30958694	29	2.3	29	83	2	78	29	24	1	44	1.63
30965656--30965736	31	2.6	32	81	13	89	24	12	11	51	1.71
30969239--30969296	29	2.1	27	83	6	71	37	0	5	56	1.21
30976700--30976816	43	2.7	43	81	6	148	29	20	13	35	1.91
30980387--30980423	8	4.5	8	86	6	56	24	10	29	35	1.89
30980373--30980427	25	2.2	26	93	3	94	25	12	27	34	1.92
30982252--30982505	47	5.4	47	95	0	418	32	8	29	28	1.87
30982624--30982702	37	2.1	37	88	4	115	25	18	30	25	1.98
30984520--30984818	40	7.5	39	92	1	445	24	22	28	25	1.99
30987513--30988089	47	12.4	47	93	2	932	32	8	29	29	1.87
30989898--30990039	40	3.6	39	79	8	144	28	15	23	32	1.95
30992449--30992648	27	7.4	27	87	0	283	34	19	22	24	1.97
30994738--30995006	48	5.6	48	87	1	369	26	28	18	27	1.98
30996433--30996607	46	3.8	45	76	13	169	21	20	29	29	1.98
30996430--30996599	92	1.8	93	89	3	272	21	20	29	28	1.98
30999296--30999653	94	3.8	93	81	10	403	22	28	20	29	1.98
30999297--30999656	47	7.7	45	72	14	248	21	28	20	28	1.98
31000173--31000240	33	2.1	33	100	0	136	25	17	17	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31001871--31001904	4	8.0	4	87	12	50	52	0	23	23	1.47
31001867--31001904	13	2.9	13	100	0	76	55	0	21	23	1.44
31001871--31001904	9	4.0	8	88	11	50	52	0	23	23	1.47
31008975--31009033	24	2.5	24	88	0	91	30	20	16	32	1.95
31016271--31016561	148	2.0	148	93	1	494	40	15	23	20	1.91
31038108--31038215	42	2.5	43	79	5	121	28	19	23	28	1.98
31048780--31048813	17	1.9	18	94	5	61	52	5	5	35	1.50
31051046--31051093	18	2.4	19	80	16	53	50	4	2	43	1.33
31054721--31054791	21	3.5	20	72	3	52	46	2	14	36	1.59
31054741--31054802	20	3.0	20	74	4	70	45	1	9	43	1.46
31054721--31054802	41	2.0	41	92	0	137	45	2	12	40	1.55
31054738--31054805	21	3.3	21	75	4	84	47	1	8	42	1.43
31060036--31060081	19	2.4	19	85	7	58	21	6	0	71	1.08
31066961--31066985	3	8.3	3	100	0	50	68	0	0	32	0.90
31066983--31067020	4	9.5	4	94	0	67	47	23	2	26	1.65
31080869--31081013	27	5.4	27	83	0	173	35	17	20	26	1.94
31080868--31081012	54	2.7	53	84	4	191	36	16	20	26	1.93
31085795--31085833	21	1.9	20	89	5	60	33	0	20	46	1.51
31089118--31089342	40	5.7	40	84	6	262	24	21	27	25	1.99
31089118--31089375	80	3.2	80	82	7	242	25	21	27	25	1.99
31093274--31093333	27	2.3	26	85	2	75	36	18	23	21	1.95
31093378--31093429	27	2.0	26	88	3	77	36	21	25	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31096228--31096461	45	5.2	45	86	0	297	33	26	16	24	1.96
31103916--31104083	45	3.7	45	83	1	185	35	25	16	23	1.95
31103916--31104083	90	1.9	90	82	2	212	35	25	16	23	1.95
31105174--31105202	14	2.0	15	93	6	51	51	20	0	27	1.47
31106635--31106664	13	2.3	13	100	0	60	33	20	6	40	1.78
31108548--31108711	42	3.9	41	76	10	152	29	24	14	31	1.95
31115139--31115356	40	5.5	40	88	4	309	23	22	27	26	1.99
31117676--31117808	64	2.1	65	94	2	234	42	20	4	32	1.72
31119630--31119714	42	2.0	42	100	0	170	28	4	18	48	1.68
31122594--31122632	19	2.2	17	86	9	51	43	0	12	43	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295