genome.fa.s2.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  121  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41565821--41565903	25	3.4	23	82	11	85	31	22	20	25	1.98
41566110--41566192	31	2.7	30	92	3	132	31	16	24	27	1.97
41566220--41566291	33	2.2	33	82	2	81	23	18	26	31	1.97
41569229--41569344	27	4.3	27	80	8	137	28	15	18	37	1.91
41569670--41569723	18	3.0	18	83	0	72	18	18	14	48	1.82
41570159--41570197	16	2.4	17	83	16	55	41	5	7	46	1.55
41572216--41572378	85	1.9	85	81	5	195	25	18	26	29	1.98
41573744--41574035	47	6.2	47	94	0	494	29	30	7	32	1.86
41573858--41573980	22	5.3	22	65	24	74	26	31	9	31	1.89
41577579--41577980	40	10.1	40	88	0	579	27	29	20	22	1.99
41577575--41577975	80	5.0	80	91	0	640	27	29	20	22	1.99
41579562--41580096	47	11.4	47	93	0	872	28	30	8	32	1.87
41584760--41584802	21	2.0	21	100	0	86	23	0	9	67	1.19
41589014--41589248	39	6.0	40	82	4	221	26	26	22	24	2.00
41591969--41592026	29	2.0	29	96	0	107	31	36	6	25	1.83
41593517--41593541	8	3.1	8	100	0	50	16	36	12	36	1.85
41597416--41597636	46	4.7	46	77	10	198	28	17	28	24	1.97
41597421--41597546	47	2.7	44	82	12	155	27	17	30	23	1.97
41597469--41597686	93	2.3	94	79	8	230	28	18	28	24	1.98
41597515--41597683	47	3.6	47	80	7	150	29	18	26	24	1.98
41597421--41597686	140	1.9	140	83	6	342	28	18	28	24	1.98
41600807--41601022	40	5.4	40	92	2	314	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41608840--41609055	40	5.4	40	92	2	314	25	27	22	24	2.00
41611598--41611690	44	2.1	45	95	2	170	43	11	33	11	1.78
41615905--41616027	46	2.6	45	82	10	124	30	17	28	24	1.97
41618566--41618679	27	4.3	26	84	5	129	19	22	21	36	1.95
41625643--41625689	19	2.3	20	85	7	60	21	4	12	61	1.48
41626698--41626766	28	2.5	28	87	0	102	21	17	39	21	1.93
41636782--41636828	23	2.0	23	95	0	85	27	27	12	31	1.93
41643489--41643745	66	3.9	64	76	9	218	29	16	29	24	1.96
41647290--41647383	43	2.2	43	84	0	116	28	17	22	31	1.96
41652982--41653036	13	3.9	15	75	18	55	14	5	0	80	0.89
41652999--41653077	6	13.5	6	79	12	67	17	3	1	77	0.99
41653003--41653075	5	13.8	5	73	21	51	16	4	1	78	0.98
41652987--41653032	21	2.2	21	84	0	56	13	6	0	80	0.89
41655947--41655979	13	2.6	13	90	4	50	39	0	12	48	1.40
41657739--41657775	14	2.8	13	88	11	58	62	10	5	21	1.48
41659384--41659651	40	6.7	40	90	2	423	26	27	22	23	2.00
41661644--41661686	20	2.1	21	91	4	70	39	4	23	32	1.75
41674379--41674421	22	2.0	22	86	9	61	34	2	4	58	1.32
41674567--41674608	20	2.1	20	86	8	59	42	2	4	50	1.36
41678776--41678813	18	2.1	18	100	0	76	78	5	15	0	0.91
41681704--41681747	14	3.4	14	81	12	58	45	2	11	40	1.53
41684335--41684519	79	2.3	82	83	7	229	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41684335--41684519	40	4.6	41	80	9	204	25	27	22	24	2.00
41689880--41689933	27	2.0	27	85	0	72	38	7	14	38	1.75
41690687--41690728	16	2.6	16	88	0	57	35	11	19	33	1.88
41702930--41702969	22	1.9	22	85	10	57	47	2	20	30	1.63
41708386--41708446	27	2.3	27	97	0	113	18	16	39	26	1.91
41712345--41712432	40	2.2	39	87	4	122	26	23	25	25	2.00
41720564--41720707	40	3.6	38	77	14	139	27	22	25	24	2.00
41720564--41720743	80	2.3	79	81	7	206	26	22	25	25	2.00
41723540--41723717	59	3.1	57	84	8	227	53	8	3	33	1.51
41737228--41737276	25	2.0	25	88	8	73	46	2	6	44	1.39
41737316--41737388	26	2.9	25	82	12	87	38	1	4	56	1.27
41737325--41737405	26	3.3	24	80	13	76	38	1	2	58	1.20
41742432--41742503	26	2.6	28	81	12	85	61	0	0	38	0.96
41742432--41742502	29	2.6	28	82	10	85	60	0	0	39	0.97
41743254--41743319	31	2.1	32	86	11	91	33	3	0	63	1.10
41745053--41745104	23	2.2	24	86	3	70	67	3	9	19	1.35
41745155--41745211	3	18.3	3	75	13	53	64	0	5	29	1.15
41745155--41745197	18	2.3	19	92	4	70	67	0	2	30	1.03
41746805--41746837	10	3.2	10	91	8	57	9	0	3	87	0.63
41746794--41746837	21	2.1	21	82	0	52	6	9	2	81	0.94
41746805--41746837	11	3.1	11	86	4	50	9	0	3	87	0.63
41747821--41748261	87	5.1	87	90	0	675	21	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41748259--41748350	43	2.1	44	82	6	107	22	25	23	28	2.00
41758254--41758291	19	2.0	20	85	15	53	39	23	0	36	1.55
41758515--41758686	46	3.7	46	77	13	181	28	27	22	21	1.99
41758520--41758690	93	1.8	93	91	0	279	28	28	22	21	1.99
41762634--41762676	3	14.0	3	81	13	52	67	0	2	30	1.03
41762634--41762676	18	2.3	19	92	4	70	67	0	2	30	1.03
41764889--41764913	7	3.6	7	100	0	50	28	0	12	60	1.32
41765268--41765333	31	2.1	31	91	0	105	27	9	27	36	1.87
41765895--41766071	60	3.0	59	85	2	248	33	4	9	53	1.53
41770771--41770813	21	2.1	20	83	12	52	25	2	2	69	1.12
41770807--41770848	19	2.3	19	87	4	59	40	0	0	59	0.97
41771747--41771816	21	3.3	20	75	11	59	20	37	21	21	1.95
41771758--41771828	22	3.3	23	74	20	71	19	40	18	21	1.91
41771747--41771828	43	1.9	43	89	0	128	19	39	19	21	1.93
41774227--41774255	14	2.0	15	93	6	51	48	3	0	48	1.18
41776942--41776978	3	12.3	3	100	0	74	67	0	0	32	0.91
41779204--41779248	9	4.8	9	81	10	54	33	2	2	62	1.20
41779205--41779247	20	2.2	19	87	4	59	30	2	2	65	1.18
41783941--41784008	34	2.0	34	91	0	109	27	25	19	27	1.98
41785029--41785064	17	2.1	18	89	5	56	77	0	22	0	0.76
41787529--41787575	22	2.1	22	96	0	85	36	19	0	44	1.51
41790737--41790961	46	4.8	48	78	9	205	27	20	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41798657--41798707	19	2.7	19	79	8	59	25	1	5	66	1.24
41811383--41811433	21	2.4	21	80	0	66	39	9	25	25	1.86
41816194--41816255	29	2.1	29	100	0	124	32	11	6	50	1.64
41820721--41820790	32	2.3	30	83	11	88	38	4	2	54	1.35
41826546--41826662	51	2.3	51	93	0	198	27	23	15	34	1.94
41833982--41834045	33	1.9	33	100	0	128	40	23	9	26	1.85
41836052--41836215	43	3.9	43	81	4	181	23	30	19	26	1.98
41836998--41837132	70	1.9	70	93	0	234	36	19	13	31	1.90
41838620--41838736	51	2.3	51	96	0	216	26	23	16	33	1.96
41842324--41842374	23	2.2	23	100	0	102	49	15	23	11	1.78
41842814--41842879	23	2.9	22	84	4	78	19	18	10	51	1.75
41854365--41854389	8	3.1	8	100	0	50	76	0	0	24	0.80
41854362--41854430	29	2.3	31	80	9	81	60	5	0	33	1.20
41860622--41860662	20	2.2	19	91	8	66	58	0	0	41	0.98
41860617--41860656	20	2.0	20	95	4	73	57	0	0	42	0.98
41861487--41861519	2	16.5	2	100	0	66	48	0	0	51	1.00
41863600--41863777	27	6.6	27	79	3	115	28	28	16	26	1.97
41863600--41863777	54	3.3	55	80	10	204	28	28	16	26	1.97
41863621--41863776	82	1.9	81	85	3	215	28	28	16	26	1.97
41871705--41871882	27	6.6	27	79	3	115	28	28	16	26	1.97
41871705--41871882	54	3.3	55	80	10	204	28	28	16	26	1.97
41871726--41871881	82	1.9	81	85	3	215	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41875911--41875987	21	3.7	20	68	14	57	48	19	16	15	1.82
41882641--41882673	12	2.8	12	100	0	66	6	27	39	27	1.80
41883574--41883641	21	3.2	21	69	19	61	47	17	19	16	1.83
41883587--41883654	21	3.2	21	72	15	61	45	16	17	20	1.85
41891258--41891295	18	2.1	18	90	0	58	7	7	18	65	1.43
41891279--41891336	11	5.3	11	80	0	53	15	10	12	62	1.55
41891280--41891336	22	2.6	22	77	0	60	15	10	12	61	1.57
41892182--41892310	20	6.7	19	69	20	67	62	2	0	34	1.13
41892221--41892262	22	1.9	22	90	9	68	61	4	0	33	1.17
41892351--41892417	9	6.9	10	76	10	50	62	1	2	32	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295