genome.fa.s2.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  145  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49335272--49335311	8	5.0	8	84	0	53	42	25	20	12	1.86
49341127--49341266	40	3.6	40	86	6	182	25	27	23	23	2.00
49349038--49349220	40	4.6	40	83	6	228	25	22	27	25	2.00
49357176--49357303	40	3.2	40	84	1	159	22	21	28	26	1.99
49362038--49362079	21	2.0	21	95	0	75	26	38	16	19	1.92
49362971--49363058	27	3.1	28	83	8	108	37	22	23	15	1.93
49364135--49364171	16	2.4	15	91	8	65	62	5	27	5	1.39
49368106--49368139	14	2.3	15	90	5	52	38	23	5	32	1.79
49370852--49371032	43	4.2	43	75	13	192	31	24	18	25	1.97
49370851--49371042	86	2.2	89	81	9	213	31	24	17	26	1.97
49371539--49371576	12	2.8	14	88	11	53	63	2	2	31	1.22
49372469--49372544	28	2.7	29	87	2	91	28	30	14	26	1.95
49372480--49372557	28	2.8	28	86	3	95	28	30	14	26	1.95
49374018--49374050	16	2.1	16	94	0	57	15	6	30	48	1.69
49375295--49375392	48	2.0	48	100	0	196	41	19	8	30	1.80
49379076--49379135	27	2.3	26	82	2	66	35	20	21	23	1.96
49381886--49382028	55	2.6	55	84	8	195	20	24	19	34	1.96
49381886--49382020	53	2.5	53	88	7	184	20	24	20	34	1.97
49386541--49386774	48	4.9	48	85	5	258	28	29	17	25	1.97
49390046--49390238	50	3.9	48	77	6	197	25	18	26	29	1.98
49402243--49402350	54	2.0	54	96	0	198	29	5	19	45	1.73
49404250--49404312	26	2.3	27	81	8	74	34	26	11	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49408935--49408961	12	2.2	12	100	0	54	51	7	0	40	1.30
49409406--49409503	27	3.5	28	90	2	135	26	13	28	31	1.94
49409434--49409516	27	3.0	27	87	5	96	30	12	25	32	1.92
49413986--49414251	47	5.6	47	88	3	379	28	30	8	31	1.87
49414041--49414239	98	2.0	98	97	0	371	30	28	8	32	1.87
49413986--49414257	98	2.8	96	83	7	336	28	30	8	32	1.87
49421629--49421654	12	2.2	12	100	0	52	50	7	0	42	1.31
49422101--49422198	27	3.5	28	90	2	135	26	13	28	31	1.94
49422129--49422211	27	3.0	27	87	5	96	30	12	25	32	1.92
49423331--49424240	452	2.0	452	96	0	1660	29	16	24	29	1.97
49437396--49437457	26	2.3	27	80	8	72	32	25	12	29	1.93
49439692--49439869	27	6.6	27	81	3	187	26	15	29	29	1.96
49439692--49439869	54	3.3	55	85	4	236	26	15	29	29	1.96
49451914--49452096	40	4.6	40	81	8	187	24	20	27	27	1.99
49451914--49452093	79	2.3	81	83	8	219	23	21	27	27	1.99
49451994--49452143	39	3.8	39	81	7	117	24	22	28	24	1.99
49451967--49452133	79	2.1	79	82	4	194	24	20	28	26	1.99
49453658--49453708	25	2.0	25	81	7	59	33	13	31	21	1.92
49455978--49456473	48	10.3	48	95	0	875	35	5	27	31	1.80
49456583--49456685	37	2.8	37	90	0	170	24	21	31	23	1.99
49457626--49457650	9	2.8	9	100	0	50	24	0	24	52	1.48
49458483--49458537	25	2.2	26	78	15	62	49	0	9	41	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49459387--49459480	45	2.1	44	86	5	127	21	17	27	34	1.95
49459398--49459561	43	3.8	45	74	11	128	23	18	26	31	1.97
49461675--49461850	39	4.5	39	93	0	289	24	27	22	26	2.00
49461647--49461850	78	2.6	78	88	1	266	24	27	23	25	2.00
49473438--49473479	21	2.0	20	86	4	57	50	23	2	23	1.61
49483573--49483796	48	4.6	48	81	1	207	25	28	17	28	1.98
49483571--49483796	96	2.3	96	80	0	245	25	27	18	28	1.98
49490382--49490458	39	2.0	39	94	0	136	20	23	31	24	1.98
49495902--49495939	14	2.9	13	81	11	51	57	10	13	18	1.63
49499648--49499723	40	1.9	39	84	7	100	25	22	21	31	1.98
49506352--49506411	30	2.0	30	87	3	86	30	25	5	40	1.77
49624567--49624697	39	3.3	39	79	9	140	25	27	21	25	1.99
49624592--49624789	40	5.0	38	74	14	150	26	27	20	26	1.99
49624568--49624735	79	2.1	80	80	5	191	25	27	20	25	1.99
49632514--49632738	40	5.7	40	82	6	233	25	28	21	25	1.99
49632670--49632747	40	1.9	41	82	10	97	26	28	20	24	1.99
49635644--49635695	26	2.0	26	100	0	104	30	19	3	46	1.68
49640278--49640471	47	4.1	47	84	2	246	34	12	27	25	1.92
49640281--49640463	94	1.9	94	88	0	276	33	13	27	25	1.93
49640442--49640625	98	1.9	96	91	4	298	36	6	26	29	1.82
49640441--49640625	48	3.8	48	87	5	282	36	6	26	30	1.82
49640771--49640879	37	2.9	37	91	2	175	22	18	31	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49648816--49648894	37	2.1	37	90	0	122	25	31	18	24	1.98
49649013--49649495	47	10.1	49	91	4	758	28	29	9	32	1.88
49649013--49649495	191	2.5	192	93	2	819	28	29	9	32	1.88
49650856--49650951	30	3.2	30	71	8	106	41	20	6	31	1.77
49650849--49650968	59	2.0	59	98	0	231	42	20	5	31	1.74
49656403--49656529	45	2.9	45	81	8	129	24	27	22	25	2.00
49656859--49657013	43	3.6	43	88	0	238	30	31	23	13	1.93
49657011--49657169	38	4.1	38	80	3	183	32	23	20	22	1.98
49665100--49665155	28	2.0	29	85	3	78	21	42	17	17	1.89
49665131--49665300	83	2.0	83	88	0	250	28	28	15	28	1.96
49665131--49665321	83	2.3	83	86	1	238	27	29	16	26	1.97
49669961--49670009	24	2.0	24	96	0	89	24	8	18	48	1.75
49684803--49684917	29	4.0	29	75	5	108	25	31	14	28	1.95
49684805--49684917	58	2.0	57	81	8	131	24	30	15	29	1.95
49699414--49699811	47	8.4	47	92	3	586	31	12	29	26	1.93
49699506--49699629	23	5.4	22	62	24	58	30	12	31	25	1.93
49699785--49699921	46	3.0	46	86	0	184	35	8	29	25	1.86
49700104--49700289	37	5.0	37	93	0	300	22	18	31	27	1.97
49704462--49704671	40	5.3	40	84	2	230	24	23	25	26	2.00
49712600--49712824	40	5.7	40	86	2	267	24	22	26	27	2.00
49712600--49712850	80	3.2	80	83	5	296	25	22	25	27	2.00
49724752--49724798	23	2.0	23	83	0	58	23	31	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49738895--49738934	21	1.9	21	84	0	53	45	20	12	22	1.84
49745731--49745782	9	5.7	9	84	11	61	34	0	5	59	1.21
49753204--49753457	40	6.4	40	90	3	374	26	27	22	23	1.99
49761214--49761471	40	6.5	40	89	4	373	26	27	22	23	2.00
49763314--49763392	24	3.4	22	76	15	70	37	21	24	16	1.93
49763356--49763401	23	2.0	23	91	0	74	34	26	26	13	1.92
49771791--49771875	28	3.1	28	83	5	102	32	18	23	24	1.97
49771814--49771879	27	2.4	28	82	7	91	33	24	21	21	1.97
49773074--49773130	18	3.2	18	75	7	62	64	0	31	3	1.10
49786777--49786846	33	2.1	33	91	0	113	24	20	8	47	1.78
49788987--49789019	16	2.1	16	88	11	50	54	27	0	18	1.44
49790514--49790625	29	3.9	29	79	1	127	27	16	31	24	1.97
49791662--49791695	18	1.9	18	88	5	52	38	20	11	29	1.88
49793308--49793412	28	3.8	28	84	0	129	35	10	26	27	1.89
49794882--49794924	21	2.0	22	90	4	70	13	18	46	20	1.83
49800596--49800766	43	4.0	43	79	3	191	25	16	27	30	1.97
49800612--49800762	42	3.5	42	77	10	135	26	17	27	29	1.97
49809959--49810018	30	2.0	30	83	6	77	21	5	13	60	1.52
49810612--49810731	60	2.0	60	96	0	222	20	20	21	38	1.94
49811868--49811901	6	5.7	6	86	13	52	50	17	14	17	1.79
49812374--49812670	27	11.0	27	88	0	396	40	5	22	31	1.77
49812676--49812766	27	3.4	27	80	8	105	29	7	19	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49812663--49812766	54	1.9	54	82	7	131	31	8	20	39	1.83
49812748--49812830	27	3.1	27	85	0	112	28	21	15	33	1.94
49814667--49814725	6	9.7	6	75	17	59	47	15	18	18	1.83
49814676--49814754	31	2.5	31	89	0	113	44	12	21	21	1.85
49814873--49814953	27	2.9	28	78	10	85	34	18	25	20	1.96
49815187--49815484	27	11.0	27	84	2	339	40	6	22	29	1.79
49815187--49815484	54	5.5	54	84	0	382	40	6	22	29	1.79
49815491--49815581	27	3.4	27	87	6	130	28	7	20	42	1.80
49815563--49815618	27	2.1	27	86	0	76	26	21	19	32	1.97
49817454--49817519	6	10.8	6	76	15	64	45	15	21	18	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295