genome.fa.s2.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  185  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63652340--63652499	47	3.6	42	74	17	144	23	20	27	28	1.99
63655412--63655491	15	5.4	15	75	12	76	10	17	13	58	1.62
63657870--63658039	47	3.7	47	80	12	192	21	21	28	27	1.99
63660795--63660947	42	3.7	41	81	6	173	31	15	22	30	1.95
63660795--63660932	43	3.3	42	85	4	154	32	16	21	28	1.95
63663511--63663621	29	3.9	29	89	1	152	25	14	34	26	1.94
63667466--63667591	44	3.0	41	78	11	121	33	26	19	20	1.96
63674765--63674833	28	2.5	28	79	9	70	28	20	21	28	1.98
63682444--63682481	19	2.0	20	85	15	53	39	23	0	36	1.55
63682712--63682881	93	1.8	93	90	0	277	30	28	19	21	1.98
63682706--63682878	46	3.7	46	76	13	183	31	27	19	21	1.98
63684213--63684320	54	2.0	54	98	0	207	36	12	13	37	1.84
63687017--63687070	27	2.0	27	85	0	72	38	14	7	38	1.75
63688058--63688090	11	2.8	12	90	9	50	36	15	12	36	1.84
63689506--63689549	15	2.9	15	89	0	70	56	13	13	15	1.67
63689884--63690051	43	3.9	43	85	2	178	30	29	16	24	1.96
63689892--63690070	43	4.2	42	86	2	171	31	29	15	23	1.95
63698121--63698265	40	3.6	40	85	4	193	25	24	26	23	2.00
63702232--63702334	38	2.7	38	81	0	116	23	19	26	31	1.98
63702327--63702436	43	2.6	43	97	0	202	11	25	31	30	1.92
63703970--63704073	48	2.2	48	82	6	122	31	22	28	17	1.96
63706525--63706626	39	2.6	39	89	3	143	22	25	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63706541--63706649	38	2.8	38	88	1	146	21	23	27	27	1.99
63706642--63706882	43	5.6	43	97	0	455	9	24	34	30	1.88
63719752--63719808	28	2.0	28	100	0	114	28	17	17	36	1.93
63722730--63722902	40	4.3	40	85	2	206	23	26	26	24	2.00
63722726--63722902	80	2.2	80	85	3	232	23	25	25	24	2.00
63731261--63731365	53	2.0	53	82	0	129	20	24	17	37	1.94
63748450--63748554	46	2.2	46	84	6	129	26	22	15	35	1.94
63748433--63748554	50	2.5	49	81	5	142	27	21	15	35	1.94
63750804--63750850	24	2.0	24	100	0	94	42	6	12	38	1.69
63753871--63753924	26	2.1	26	96	0	99	12	16	27	42	1.85
63758049--63758255	53	3.8	54	80	1	227	21	24	17	36	1.94
63764403--63764649	40	6.2	40	86	5	315	25	21	26	27	1.99
63764399--63764626	120	1.9	119	89	2	350	25	20	26	28	1.99
63773427--63773465	20	1.9	20	84	5	51	48	7	12	30	1.69
63776355--63776397	22	1.9	23	90	4	70	20	2	53	23	1.57
63780136--63780317	91	2.0	91	95	0	328	25	18	28	26	1.98
63782777--63782822	23	2.0	23	86	0	65	10	32	13	43	1.78
63787041--63787082	17	2.3	19	92	8	70	9	19	45	26	1.80
63787612--63787676	22	3.0	22	83	0	76	13	23	27	35	1.93
63787833--63788076	114	2.1	114	90	1	373	27	18	26	28	1.98
63789953--63790102	67	2.2	67	81	8	171	32	17	28	21	1.96
63789977--63790160	67	2.8	64	77	8	194	29	17	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63801179--63801276	40	2.5	40	84	0	133	28	24	18	28	1.98
63811071--63811128	28	2.1	28	96	0	107	32	12	22	32	1.91
63814532--63814859	164	2.0	164	93	0	557	31	15	16	35	1.91
63831855--63831969	29	4.0	28	83	8	108	27	15	26	29	1.96
63836446--63836568	58	2.2	56	89	2	183	28	32	14	24	1.95
63836437--63836568	28	4.6	28	87	3	183	28	33	14	24	1.94
63837757--63837901	6	23.3	6	71	19	102	48	15	16	18	1.81
63837799--63837901	31	3.3	31	98	1	197	49	15	15	19	1.80
63837771--63837872	25	3.8	25	79	14	105	48	16	17	17	1.82
63837771--63837890	31	4.3	25	85	11	105	47	16	17	18	1.83
63838043--63838111	26	2.6	26	86	2	84	36	20	24	18	1.95
63838270--63838334	22	3.0	21	77	8	58	32	24	21	21	1.98
63838761--63838955	27	7.3	27	82	2	214	25	18	20	35	1.95
63838760--63838955	54	3.6	54	86	2	243	25	18	19	35	1.95
63838796--63838946	81	1.9	81	92	0	257	25	17	21	35	1.95
63838761--63838957	81	2.4	81	84	4	254	25	18	19	36	1.95
63838976--63839361	27	14.3	27	86	1	405	31	8	20	39	1.82
63846121--63846226	42	2.5	42	87	4	144	27	33	25	13	1.93
63846935--63847154	47	4.7	46	76	11	175	25	28	17	29	1.97
63846935--63847154	94	2.3	94	80	6	232	25	28	17	29	1.97
63849478--63849502	13	1.9	13	100	0	50	16	8	28	48	1.74
63860112--63860173	22	2.8	23	78	11	67	32	22	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63860321--63860440	41	2.9	40	88	2	168	28	29	20	22	1.98
63860687--63861050	27	13.4	27	81	4	317	29	8	20	41	1.82
63861034--63861101	26	2.6	26	86	9	93	30	11	17	39	1.86
63861043--63861101	26	2.2	27	91	8	95	33	13	15	37	1.86
63864330--63864448	41	2.9	41	88	0	175	25	27	24	22	2.00
63864683--63865047	27	13.7	27	78	7	226	28	7	21	41	1.81
63864683--63864996	54	5.9	54	76	9	252	27	7	22	42	1.81
63864816--63864996	81	2.2	81	86	3	249	27	6	24	41	1.80
63864978--63865047	26	2.6	27	86	4	97	31	7	20	41	1.79
63865029--63865139	27	4.1	27	77	3	116	30	19	18	30	1.96
63870737--63870894	43	3.7	43	73	10	155	25	17	26	31	1.97
63874331--63874363	11	3.1	11	91	4	50	21	0	30	48	1.50
63875842--63875893	27	1.9	27	88	7	79	30	13	17	38	1.88
63881507--63881682	46	3.8	46	77	12	198	21	20	28	29	1.98
63881504--63881675	93	1.8	93	93	0	299	21	20	29	28	1.98
63886058--63886118	31	1.9	33	83	6	81	24	19	4	50	1.67
63888047--63888072	13	2.0	13	100	0	52	15	38	30	15	1.88
63889208--63889389	48	3.8	47	79	2	186	27	25	18	28	1.98
63889258--63889527	138	2.0	136	80	7	303	29	24	17	28	1.97
63904698--63904747	8	6.2	8	81	9	57	54	16	18	12	1.72
63904698--63904747	24	2.1	24	88	0	73	54	16	18	12	1.72
63906398--63906489	42	2.2	43	84	5	116	28	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63916341--63916421	23	3.6	23	73	15	69	41	19	17	20	1.90
63919407--63919604	51	3.9	51	91	1	317	28	24	14	33	1.94
63919629--63919907	52	5.4	52	92	0	434	25	21	14	38	1.91
63940609--63940654	22	2.1	22	100	0	92	26	10	19	43	1.84
63941759--63941837	32	2.5	32	97	0	149	13	26	37	21	1.91
63945153--63945198	16	2.9	16	80	0	56	52	23	4	19	1.64
63951343--63951374	8	3.8	9	84	16	50	56	34	0	9	1.32
63951347--63951376	8	3.8	8	90	0	51	56	30	0	13	1.37
63951344--63951376	16	2.1	16	100	0	66	54	33	0	12	1.37
63954552--63954643	40	2.3	39	81	10	107	30	27	15	27	1.96
63961364--63961495	46	2.9	46	73	13	126	29	24	18	28	1.98
63961318--63961492	92	1.9	92	82	4	219	30	22	17	29	1.96
63964731--63964784	24	2.4	22	84	6	72	50	0	9	40	1.35
63965644--63965965	147	2.2	144	82	7	364	42	4	11	41	1.62
63966413--63966459	24	1.9	24	83	12	60	31	6	6	55	1.51
63966483--63966539	21	2.6	22	86	8	73	21	7	1	70	1.20
63966483--63966539	10	5.4	10	78	12	60	21	7	1	70	1.20
63968536--63968790	55	4.8	53	79	8	236	35	18	25	20	1.95
63968546--63968743	108	1.8	110	87	4	303	33	18	25	22	1.96
63976697--63977012	42	7.5	42	87	2	431	20	18	22	38	1.93
63976697--63977145	126	3.4	126	81	11	474	20	18	21	39	1.92
63976998--63977028	16	1.9	16	93	0	53	19	16	9	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63976953--63977070	58	2.0	58	85	0	155	19	16	17	45	1.85
63976867--63977145	142	2.0	142	92	2	463	21	16	20	41	1.90
63977009--63977146	42	3.3	42	77	4	134	21	17	19	42	1.90
63977153--63977183	16	1.9	16	100	0	62	25	19	3	51	1.62
63980123--63980221	22	4.5	22	96	0	162	14	40	28	17	1.88
63980823--63981214	157	2.6	152	83	6	470	43	4	10	41	1.60
63981830--63981865	10	3.5	10	85	7	54	19	5	0	75	1.00
63981830--63981883	21	2.5	21	85	8	65	18	7	1	72	1.17
63983471--63984799	664	2.0	663	98	0	2599	31	15	10	42	1.80
63986243--63986287	21	2.1	21	91	0	72	53	15	4	26	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295